Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CROCC	9696	hgsc.bcm.edu	37	1	17263238	17263238	+	Missense_Mutation	SNP	G	G	C	rs202121748		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	CROCC-137	NM_014675	exon9	c.G1063C	p.A355P	GCCGAGGCAGCCC	.	32	2	81	1	.	2	2	0	0	0
ARHGEF10L	55160	bcgsc.ca	37	1	17939552	17939552	+	Splice_Site	SNP	G	G	T	rs76330277	alternate_allele	TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ARHGEF10L-292	NM_018125	exon8	c.610-1G>T	.	GCTCCAGCTTTCT	.	166	6	195	0	.	0	0	0	0	0
LDLRAP1	26119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	25889193	25889193	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	LDLRAP1-91	NM_015627	exon5	c.A518G	p.Q173R	TTTGGCAGGTGTC	.	68	28	77	0	.	0	0	0	0	0
GTF2B	2959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	89325567	89325567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	GTF2B-154	NM_001514	exon5	c.A533G	p.K178R	TTACCTTTAAATG	.	101	46	121	0	.	0	0	0	0	0
TARS2	80222	hgsc.bcm.edu	37	1	150469382	150469382	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	TARS2-91	NM_025150	exon9	c.A1018T	p.R340W	TTTATCAGGGTAA	.	51	3	45	0	.	0	0	0	0	0
GOLPH3L	55204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150634375	150634375	+	Silent	SNP	A	A	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	GOLPH3L-91	NM_018178	exon4	c.T345A	p.G115G	AACATCACCTGTT	.	110	39	92	0	.	7	1	6	0	0
DENND4B	9909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153915526	153915526	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	DENND4B-69	NM_014856	exon3	c.T398A	p.L133Q	GGGGCCAGGTTTG	.	74	26	103	0	.	12	9	3	0	0
FAM5C	339479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	190068039	190068039	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	FAM5C-228	NM_199051	exon8	c.C1410G	p.S470R	CCCCTGGCTGAGC	.	170	40	244	0	.	0	0	0	0	0
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	233190130	233190130	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	PCNXL2-91	NM_014801	exon25	c.A4235G	p.N1412S	CTGTAGTTGCCCC	.	43	19	34	0	.	3	3	0	0	0
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	17157562	17157562	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	CUBN-166	NM_001081	exon7	c.T628C	p.C210R	ATGCACACTGGGG	.	110	37	92	0	.	9	3	6	0	0
COMMD3-BMI1	0	hgsc.bcm.edu	37	10	22605388	22605388	+	Silent	SNP	G	G	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	.	NM_001204062	exon1	c.G42A	p.L14L	GATGCTGGCGGAT	.	8	6	2	2	.	32	17	15	0	0
MYO3A	53904	hgsc.bcm.edu	37	10	26459400	26459400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	MYO3A-1007	NM_017433	exon29	c.C3330A	p.N1110K	GAAAAACACAGCA	.	33	2	33	0	.	0	0	0	0	0
IDE	3416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	94239044	94239044	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	IDE-92	NM_004969	exon15	c.A1874G	p.Y625C	ATCCCATAGATGG	.	140	57	117	0	.	0	0	0	0	0
SLC22A8	9376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62782340	62782340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	SLC22A8-93	NM_001184732	exon2	c.A91G	p.M31V	TGGCCATGTTGAG	.	256	85	289	0	.	0	0	0	0	0
PITPNM1	9600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	67263727	67263727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	PITPNM1-227	NM_004910	exon15	c.A2239G	p.K747E	GGAACTTCGGGGC	.	73	36	110	0	.	30	9	21	0	0
PCF11	51585	hgsc.bcm.edu	37	11	82877237	82877237	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	PCF11-23	NM_015885	exon5	c.A1298G	p.E433G	AAGATGAGCACAT	.	25	2	20	0	.	3	3	0	0	0
ALG9	79796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	111715419	111715419	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ALG9-91	NM_001077690	exon10	c.T923C	p.I308T	CCATTAATTAAAT	.	83	38	80	0	.	6	3	3	0	0
CACNA1C	775	hgsc.bcm.edu	37	12	2795428	2795428	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	CACNA1C-34	NM_199460	exon48	c.A6026G	p.H2009R	TGGTTCATCATCA	.	215	11	172	2	.	1	0	1	0	0
NCAPD2	9918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6638743	6638743	+	Silent	SNP	C	C	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	NCAPD2-660	NM_014865	exon28	c.C3637A	p.R1213R	TGTCAGCGGTTCC	.	114	20	116	0	.	32	23	9	0	0
OS9	10956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	58087952	58087952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	OS9-493	NM_001261423	exon1	c.C8T	p.A3V	TGGCGGCGGAAAC	.	253	70	192	1	.	15	11	4	0	0
ESD	2098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	47345616	47345616	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ESD-91	NM_001984	exon10	c.T784C	p.Y262H	AGTAGTAGCTATG	.	83	21	52	0	.	208	111	97	0	0
ATP7B	540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	52511445	52511445	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ATP7B-92	NM_000053	exon19	c.A3988C	p.I1330L	TATAAATCAGTGC	.	76	33	83	0	.	9	6	3	0	0
BAZ1A	11177	hgsc.bcm.edu	37	14	35270380	35270380	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	BAZ1A-291	NM_182648	exon8	c.A881C	p.K294T	GTCTGTTTATTAG	.	25	2	27	0	.	4	4	0	0	0
SERPINA10	51156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	94756790	94756790	+	Silent	SNP	C	C	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	SERPINA10-228	NM_001100607	exon2	c.G141A	p.E47E	CTCTTCCTCCTTG	.	33	13	54	0	.	0	0	0	0	0
MYO1E	4643	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	59515313	59515313	+	Silent	SNP	C	C	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	MYO1E-514	NM_004998	exon9	c.G855C	p.L285L	GTTTCCCAGGTGG	.	59	8	65	0	.	37	31	6	0	0
RORA	6095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	60849084	60849084	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	RORA-290	NM_134260	exon3	c.A263G	p.E88G	TTATCTTCCTTTT	.	169	83	129	0	.	0	0	0	0	0
DENND4A	10260	hgsc.bcm.edu	37	15	66010115	66010115	+	Splice_Site	SNP	C	C	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	DENND4A-229	NM_001144823	exon14	c.1807+1G>C	.	CACTCACCTTGTA	.	21	2	14	0	.	0	0	0	0	0
C15orf39	56905	bcgsc.ca	37	15	75499127	75499127	+	Silent	SNP	C	C	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	C15orf39-90	NM_015492	exon2	c.C738A	p.P246P	GGGGCCCTCAAGT	.	67	4	83	0	.	2	2	0	0	0
GFER	2671	hgsc.bcm.edu	37	16	2034408	2034408	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	GFER-90	NM_005262	exon1	c.G189C	p.E63D	CGCCGAGGACGCC	.	9	7	4	1	.	10	2	8	0	0
GFER	2671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2035934	2035934	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	GFER-90	NM_005262	exon3	c.A523C	p.N175H	CTGCACAATGAAG	.	201	121	185	0	.	47	13	34	0	0
GFER	2671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2035967	2035967	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	GFER-90	NM_005262	exon3	c.T556A	p.F186I	CCTGACTTCGACT	.	171	101	182	1	.	57	13	44	0	0
BFAR	51283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	14755823	14755823	+	Silent	SNP	G	G	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	BFAR-92	NM_016561	exon6	c.G858T	p.L286L	CTACCTGTACCTG	.	280	161	211	0	.	50	15	35	0	0
XYLT1	64131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	17202725	17202725	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	XYLT1-94	NM_022166	exon12	c.G2707T	p.E903X	ATCCCTCCAGCGC	.	125	9	98	0	.	9	9	0	0	0
SLC12A4	6560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67982000	67982000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	SLC12A4-91	NM_001145962	exon13	c.C1817T	p.T606I	TTGGGGGTCCTCA	.	263	64	244	0	.	53	31	22	0	0
CNTNAP4	85445	bcgsc.ca	37	16	76389341	76389341	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	CNTNAP4-70	NM_138994	exon3	c.G248C	p.S83T	TGACCAGCTACCT	.	153	5	88	0	.	0	0	0	0	0
CLUH	23277	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	2595388	2595388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	.	NM_015229	exon23	c.C3447A	p.H1149Q	AAGGTGGTGGCTG	.	13	9	19	0	.	0	0	0	0	0
NDEL1	81565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	8350137	8350137	+	Silent	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	NDEL1-90	NM_001025579	exon4	c.T306C	p.S102S	TTTAAGTCAGACT	.	115	60	64	0	.	9	1	8	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	443	56	216	34	.	38	3	35	0	0
SLFN12	55106	bcgsc.ca	37	17	33749975	33749975	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	SLFN12-91	NM_018042	exon2	c.G73T	p.E25X	TGTTCTCTCCAAG	.	236	7	156	0	.	3	3	0	0	0
IGFBP4	3487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38612795	38612795	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	IGFBP4-522	NM_001552	exon4	c.A737G	p.E246G	AGGGGGAGCTGGA	.	108	24	116	1	.	257	187	69	1	0
ACLY	47	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40025023	40025023	+	Silent	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ACLY-228	NM_001096	exon28	c.A3150G	p.E1050E	AATATATTCATCA	.	180	46	110	0	.	148	103	45	0	0
NACA2	342538	ucsc.edu	37	17	59668191	59668191	+	Silent	SNP	C	C	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	NACA2-91	NM_199290	exon1	c.G351A	p.S117S	GGCATCCGAAGCA	.	378	1	209	1	.	0	0	0	0	0
CSNK1D	1453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80202675	80202675	+	Silent	SNP	C	C	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	CSNK1D-909	NM_001893	exon9	c.G1230A	p.Q410Q	GACAGACTGAAGA	.	98	47	92	0	.	105	31	74	0	0
DSG3	1830	hgsc.bcm.edu	37	18	29054160	29054160	+	Silent	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	DSG3-98	NM_001944	exon15	c.A2178G	p.G726G	GCTTGGAGCAGCC	.	49	3	72	0	.	1	1	0	0	0
SETBP1	26040	hgsc.bcm.edu	37	18	42532691	42532691	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	SETBP1-155	NM_015559	exon4	c.A3386G	p.Q1129R	ACATGCAGCCTTC	.	57	3	91	0	.	5	5	0	0	0
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11132430	11132430	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	SMARCA4-1523	NM_003072	exon19	c.A2646T	p.E882D	GGACGAAGGTCAC	.	34	11	55	0	.	40	24	16	0	0
PPP6R1	22870	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	55752903	55752903	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	PPP6R1-67	NM_014931	exon8	c.T950A	p.L317X	GCGTGCAAGGCGC	.	15	4	20	0	.	35	35	0	0	0
TEKT4	150483	ucsc.edu;bcgsc.ca	37	2	95540716	95540716	+	Silent	SNP	G	G	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	TEKT4-155	NM_144705	exon4	c.G909A	p.R303R	CGCGCGGTACAAG	.	20	4	40	0	.	0	0	0	0	0
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	133721438	133721438	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	.	NM_207481	exon8	c.A434C	p.K145T	GACAGCTTTTCCT	.	105	38	94	0	.	0	0	0	0	0
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	148677893	148677893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ACVR2A-831	NM_001616	exon8	c.G1057A	p.A353T	AAGTCTGCAGGCG	.	94	34	67	0	.	4	1	3	0	0
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	152482148	152482148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	NEB-145	NM_001271208	exon71	c.T10352C	p.L3451S	GTGTATAAGCGCT	.	28	10	11	0	.	0	0	0	0	0
SSFA2	6744	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	182778659	182778659	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	SSFA2-153	NM_001130445	exon10	c.A1574T	p.Q525L	ATCTTCAGGTAAA	.	43	22	26	0	.	0	0	0	0	0
ICOS	29851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	204822592	204822592	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ICOS-90	NM_012092	exon4	c.A572C	p.K191T	CCAAAAAATCTAG	.	86	36	45	0	.	0	0	0	0	0
ACADL	33	hgsc.bcm.edu	37	2	211068079	211068079	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ACADL-90	NM_001608	exon8	c.T960G	p.F320L	TTTGCCAAAAGCT	.	31	2	16	0	.	12	12	0	0	0
DNPEP	23549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220239739	220239739	+	Silent	SNP	G	G	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	DNPEP-90	NM_012100	exon14	c.C1245T	p.L415L	GACCATGAGATCC	.	60	23	56	0	.	0	0	0	0	0
DNMT3B	1789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	31375212	31375212	+	Silent	SNP	G	G	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	DNMT3B-660	NM_175850	exon6	c.G645A	p.P215P	GTCCCCGCAGGTG	.	87	50	79	0	.	5	0	5	0	0
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	33330861	33330861	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	NCOA6-292	NM_014071	exon11	c.A3199G	p.R1067G	GCATTCTCTGGGA	.	349	214	220	0	.	16	2	14	0	0
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	47628617	47628617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ARFGEF2-358	NM_006420	exon28	c.C3914A	p.P1305H	AGAGGCCTCGGGT	.	215	55	95	0	.	0	0	0	0	0
MYO18B	84700	hgsc.bcm.edu	37	22	26166902	26166902	+	Missense_Mutation	SNP	T	T	A	rs201482451		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	MYO18B-142	NM_032608	exon6	c.T1643A	p.I548N	TTTGGATTGATGC	.	3	3	2	1	.	0	0	0	0	0
APOL6	80830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	36055131	36055131	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	APOL6-90	NM_030641	exon3	c.C520G	p.L174V	TATAATCTTAGAA	.	72	8	74	0	.	3	3	0	0	0
GOLGB1	2804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121433805	121433805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	GOLGB1-161	NM_001256486	exon10	c.C1307T	p.S436F	TCTTTGGATTTTT	.	64	32	55	0	.	11	6	5	0	0
ZIC1	7545	hgsc.bcm.edu	37	3	147128606	147128606	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ZIC1-91	NM_003412	exon1	c.C707G	p.A236G	AGCTGGCCAACCC	.	60	3	70	0	.	0	0	0	0	0
TNIP2	79155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	2746482	2746482	+	Missense_Mutation	SNP	G	G	A	rs150823075		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	TNIP2-90	NM_024309	exon4	c.C848T	p.A283V	GAGGCCGCCAGCT	.	107	46	124	0	G|1.000;A|0.000	42	24	18	0	0
DCUN1D4	23142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	52765463	52765463	+	Silent	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	DCUN1D4-92	NM_015115	exon8	c.T534C	p.N178N	CAGAAATACTTTG	.	25	10	17	0	.	4	3	1	0	0
PDE5A	8654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	120446828	120446828	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	PDE5A-90	NM_001083	exon12	c.A1655T	p.Q552L	AGGGTCTGGGCAG	.	104	41	61	1	.	0	0	0	0	0
TBC1D9	23158	hgsc.bcm.edu	37	4	141590820	141590820	+	Silent	SNP	G	G	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	TBC1D9-23	NM_015130	exon8	c.C1405A	p.R469R	ACCGCCGCCGATA	.	37	2	42	0	.	11	11	0	0	0
HMGB2	3148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	174254247	174254247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	HMGB2-650	NM_001130689	exon2	c.A269G	p.K90R	GGGTCCTTTTTCT	.	276	104	226	0	.	65	41	24	0	0
SNX25	83891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	186188140	186188140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	SNX25-273	NM_031953	exon5	c.G430A	p.E144K	GTAGTGGAGTTAC	.	95	39	74	0	.	3	1	2	0	0
CLPTM1L	81037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1323010	1323010	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	CLPTM1L-153	NM_030782	exon13	c.A1297G	p.I433V	TGTTGATTAACCA	.	143	42	111	0	.	34	18	16	0	0
ADAMTS16	170690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	5240027	5240027	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ADAMTS16-275	NM_139056	exon16	c.C2512G	p.L838V	GAGACACTGATTG	.	135	15	127	0	.	0	0	0	0	0
PDZD2	23037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	32059458	32059458	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	PDZD2-563	NM_178140	exon12	c.C2314A	p.L772M	AGCAACCTGAGGT	.	53	20	50	0	.	0	0	0	0	0
C5orf42	65250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	37181023	37181023	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	C5orf42-94	NM_023073	exon27	c.G5506A	p.V1836I	TTGCTACTGCAAC	.	65	24	55	0	.	0	0	0	0	0
DAB2	1601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	39390645	39390645	+	Silent	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	DAB2-227	NM_001343	exon5	c.T363C	p.I121I	GAAAGAAATCTTA	.	78	34	62	0	.	52	32	20	0	0
DAB2	1601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	39394411	39394411	+	Silent	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	DAB2-227	NM_001343	exon2	c.A12G	p.E4E	TTCTACTTCGTTA	.	81	32	66	0	.	46	20	26	0	0
PLK2	10769	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	57753133	57753133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	PLK2-409	NM_006622	exon7	c.G883A	p.A295T	ACCTTGCTTCCCT	.	48	14	40	0	.	16	11	5	0	0
GPR98	84059	hgsc.bcm.edu	37	5	89949707	89949707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	GPR98-103	NM_032119	exon20	c.A4316G	p.Y1439C	AATTCTACCTGGA	.	9	2	14	1	.	0	0	0	0	0
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	127641530	127641530	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	FBN2-146	NM_001999	exon43	c.C5533G	p.L1845V	CCAACAGCAGGTC	.	122	11	88	0	.	0	0	0	0	0
RUFY1	80230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	178987050	178987050	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	RUFY1-157	NM_025158	exon2	c.A335G	p.E112G	TGGAGGAGCGTGC	.	32	17	38	0	.	3	2	1	0	0
KIF13A	63971	hgsc.bcm.edu	37	6	17771374	17771374	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	KIF13A-137	NM_022113	exon38	c.G4552C	p.E1518Q	TGTGTTCTACTGG	.	23	2	40	0	.	6	6	0	0	0
DDAH2	23564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31696435	31696435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	DDAH2-90	NM_013974	exon3	c.G385A	p.V129I	AGAGAACGTCAGT	.	44	18	53	0	.	2	1	1	0	0
GSTA1	2938	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	52658943	52658943	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	GSTA1-91	NM_145740	exon5	c.T394C	p.Y132H	GGAAGTAGCGATT	.	342	114	263	0	.	1	1	0	0	0
KCNQ5	56479	hgsc.bcm.edu	37	6	73332281	73332281	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	KCNQ5-158	NM_001160132	exon1	c.C364G	p.P122A	GAGAGACCCCGCG	.	27	2	30	0	.	0	0	0	0	0
IBTK	25998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	82904254	82904254	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	IBTK-92	NM_015525	exon23	c.A3280C	p.I1094L	TGGGAATAGGCTG	.	49	21	42	0	.	30	18	12	0	0
KLHL32	114792	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	97562031	97562031	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	KLHL32-94	NM_052904	exon7	c.G1000T	p.V334L	ATGCCTGTGGGAA	.	101	7	109	0	.	4	4	0	0	0
USP45	85015	hgsc.bcm.edu	37	6	99956502	99956502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	USP45-637	NM_001080481	exon3	c.T257C	p.L86P	CACTTGAGGCACA	.	38	2	19	0	.	1	1	0	0	0
RGS17	26575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	153332802	153332802	+	Silent	SNP	A	A	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	RGS17-227	NM_012419	exon5	c.T540A	p.T180T	CATTAAAGTATAT	.	44	10	38	0	.	1	0	1	0	0
DPY19L1	23333	hgsc.bcm.edu	37	7	35009095	35009095	+	Missense_Mutation	SNP	C	C	A	rs201226448		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	DPY19L1-68	NM_015283	exon9	c.G745T	p.V249L	AAAATACATTGGA	.	88	5	39	0	.	8	8	0	0	0
PPIA	5478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44839397	44839397	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	PPIA-90	NM_021130	exon4	c.G286T	p.G96C	GGTCCTGGCATCT	.	126	23	98	0	.	2445	1692	751	1	1
CTAGE15	441294	hgsc.bcm.edu	37	7	143270001	143270001	+	Missense_Mutation	SNP	C	C	T	rs77246673	alternate_allele	TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	.	NM_001008747	exon1	c.C1091T	p.A364V	AACAAGCATCTTT	.	57	11	28	2	C|0.500;A|0.500	21	18	3	0	0
CUL1	8454	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	148495672	148495672	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	CUL1-226	NM_003592	exon20	c.T2039C	p.L680S	AGAAATTAAGGGT	.	80	47	69	0	.	0	0	0	0	0
MLL3	58508	hgsc.bcm.edu	37	7	151927320	151927320	+	Silent	SNP	C	C	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	MLL3-1398	NM_170606	exon17	c.G2856A	p.K952K	AGTGAACTTGTCA	.	56	3	38	0	.	2	2	0	0	0
MLL3	58508	hgsc.bcm.edu	37	7	151945349	151945349	+	Nonsense_Mutation	SNP	T	T	A	rs201039690		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	MLL3-1398	NM_170606	exon14	c.A2170T	p.K724X	GTTCCTTTTCTCC	.	173	13	79	1	.	0	0	0	0	0
MFHAS1	9258	hgsc.bcm.edu;broad.mit.edu	37	8	8654999	8654999	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	MFHAS1-90	NM_004225	exon2	c.G3001C	p.E1001Q	GCAACTCCCCTGT	.	57	3	60	0	.	0	0	0	0	0
SLC7A2	6542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	17419589	17419589	+	Silent	SNP	G	G	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	SLC7A2-93	NM_001164771	exon10	c.G1761A	p.Q587Q	GAGGCAGCCCCAG	.	67	32	76	0	.	0	0	0	0	0
KIAA0196	9897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	126085409	126085409	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	KIAA0196-92	NM_014846	exon9	c.A1136C	p.H379P	GCTGTATGAAGCA	.	90	39	82	0	.	0	0	0	0	0
ADCY8	114	hgsc.bcm.edu;broad.mit.edu	37	8	132052526	132052526	+	Silent	SNP	G	G	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ADCY8-157	NM_001115	exon1	c.C54T	p.I18I	CGGGTGGATGGTG	.	7	4	10	0	.	0	0	0	0	0
BAI1	575	hgsc.bcm.edu;broad.mit.edu	37	8	143623373	143623373	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	BAI1-1129	NM_001702	exon27	c.G3778C	p.E1260Q	CTGCCCGAGGAGG	.	22	3	27	0	.	1	1	0	0	0
CYP11B1	1584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	143957217	143957217	+	Silent	SNP	G	G	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	CYP11B1-94	NM_000497	exon6	c.C1032T	p.S344S	GGCCAGGCTCTCC	.	169	70	267	0	.	0	0	0	0	0
NFX1	4799	bcgsc.ca	37	9	33307212	33307212	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	NFX1-91	NM_147134	exon5	c.T1291C	p.W431R	CCTGAGTGGAGCA	.	141	6	117	0	.	10	10	0	0	0
ANKRD18B	441459	bcgsc.ca	37	9	33572355	33572355	+	Silent	SNP	C	C	G	rs200701439		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	.	NM_001244752	exon16	c.C3030G	p.L1010L	TCTTCTCTAGAAT	.	39	6	25	0	C|0.998;G|0.002	0	0	0	0	0
SPATA31A6	389730	broad.mit.edu;bcgsc.ca	37	9	43626666	43626666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	.	NM_001145196	exon4	c.C2021T	p.T674I	TGTGGGGTCTCAC	.	295	126	275	1	.	0	0	0	0	0
TRPM3	80036	hgsc.bcm.edu	37	9	73255487	73255487	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	TRPM3-521	NM_001007471	exon10	c.C1435G	p.Q479E	ACTGTTGCCCGTA	.	32	2	33	0	.	0	0	0	0	0
PCSK5	5125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	78953204	78953204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	PCSK5-93	NM_001190482	exon34	c.T4726C	p.C1576R	AAGGGGTGCCAGG	.	35	13	47	0	.	0	0	0	0	0
HNRNPK	3190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	86587099	86587099	+	Silent	SNP	G	G	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	HNRNPK-227	NM_031262	exon11	c.C651A	p.P217P	TTTGATGGGAGAC	.	75	35	60	0	.	0	0	0	0	0
FNBP1	23048	hgsc.bcm.edu	37	9	132719674	132719674	+	Missense_Mutation	SNP	C	C	G	rs200418146	alternate_allele	TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	.	NM_015033	exon6	c.G478C	p.A160P	TGTCAGCGTCCAT	.	37	2	48	0	C|1.000;T|0.000	2	2	0	0	0
OBP2B	29989	hgsc.bcm.edu	37	9	136083879	136083879	+	Missense_Mutation	SNP	C	C	G	rs28584111		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	OBP2B-68	NM_014581	exon2	c.G183C	p.K61N	TTCCAACTTCCCA	.	52	4	61	2	.	0	0	0	0	0
SNAPC4	6621	hgsc.bcm.edu;broad.mit.edu	37	9	139272475	139272475	+	Silent	SNP	G	G	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	SNAPC4-90	NM_003086	exon21	c.C3804A	p.A1268A	GTCCAGGGCCCCC	.	24	8	35	0	.	2	1	1	0	0
BCOR	54880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	39932880	39932880	+	Silent	SNP	G	G	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	BCOR-229	NM_001123385	exon4	c.C1719A	p.A573A	ATTGGGGGCGGGT	.	38	32	70	0	.	9	0	9	0	0
CXorf38	159013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	40506303	40506303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	CXorf38-131	NM_144970	exon2	c.T307C	p.C103R	GCCGGCAGTTTCC	.	22	14	38	0	.	2	0	2	0	0
GJB1	2705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	70444364	70444364	+	Silent	SNP	C	C	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	GJB1-193	NM_000166	exon2	c.C807T	p.T269T	TGGCACCGGGGCT	.	10	7	19	0	.	32	24	8	0	0
PASD1	139135	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	X	150828200	150828200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	PASD1-133	NM_173493	exon10	c.G733T	p.A245S	GATATTGCAGAGG	.	40	4	32	0	.	0	0	0	0	0
CCDC18	343099	hgsc.bcm.edu;broad.mit.edu	37	1	93680444	93680444	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	CCDC18-138	NM_206886	exon12	c.1640delC	p.A547fs	.	.	33	11	21	0	.	0	0	0	0	0
RPTN	126638	broad.mit.edu	37	1	152127881	152127884	+	Frame_Shift_Del	DEL	TGTC	TGTC	-	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	TGTC	TGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	RPTN-68	NM_001122965	exon3	c.1691_1694del	p.564_565del	TGGCCTTGTCTGT	.	758	6	695	0	.	0	0	0	0	0
FBXO42	54455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	16577319	16577320	+	Nonsense_Mutation	INS	-	-	TATTAAA	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	FBXO42-228	NM_018994	exon10	c.2000_2001insTTTAATA	p.S667_S668delinsIX	.	.	221	35	262	0	.	0	0	0	0	0
ASAP3	55616	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	23779230	23779231	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ASAP3-155	NM_001143778	exon4	c.383_384insCC	p.L128fs	.	.	214	80	233	0	.	0	0	0	0	0
HECTD2	143279	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	93252242	93252243	+	Splice_Site	INS	-	-	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	HECTD2-658	NM_182765	exon13	c.1432+1->T	.	.	.	38	14	33	0	.	0	0	0	0	0
STK24	8428	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	99114124	99114125	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	STK24-979	NM_003576	exon8	c.993_994insG	p.G331fs	.	.	113	41	103	0	.	0	0	0	0	0
ACMSD	130013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	135659397	135659398	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-8310-01A-11D-2396-08	TCGA-A4-8310-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c6aaac72-5533-41b0-8bdb-8639f0339dd0	d8660b1d-6a91-4944-9e79-5911f80f873e	.	ACMSD-91	NM_138326	exon10	c.978_979insT	p.A326fs	.	.	42	18	44	0	.	0	0	0	0	0