Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	34052133	34052133	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	CSMD2-103	NM_052896	exon47	c.A7028T	p.Q2343L	TCAAACTGCAGGT	.	230	98	180	0	.	0	0	0	0	0
KIAA0754	643314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	39878312	39878312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	.	NM_015038	exon1	c.C2375T	p.S792L	CATCATCAGAGGG	.	57	17	45	0	.	3	0	3	0	0
STXBP3	6814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	109338856	109338856	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	STXBP3-93	NM_007269	exon14	c.G1111C	p.D371H	ATTAAGGACCTGG	.	205	53	156	0	.	0	0	0	0	0
CSGALNACT2	55454	broad.mit.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	rs79064394		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	CSGALNACT2-69	NM_018590	exon5	c.G1086T	p.L362F	GGTCTTGATGTTT	.	134	4	143	1	.	3	3	0	0	0
AIFM2	84883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	71874678	71874678	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	AIFM2-90	NM_001198696	exon8	c.C968T	p.P323L	TTACCCGGCTTGT	.	60	16	88	0	.	0	0	0	0	0
FERMT3	83706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63990576	63990576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	FERMT3-23	NM_178443	exon14	c.G1739T	p.R580L	TGATCCGCATCGA	.	170	65	222	0	.	17	17	0	0	0
SLCO1B3	28234	ucsc.edu	37	12	21030729	21030729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	SLCO1B3-155	NM_019844	exon10	c.A994G	p.I332V	AAAAGCATCCTTA	.	44	4	47	0	.	0	0	0	0	0
KRT8	3856	broad.mit.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	KRT8-92	NM_001256282	exon2	c.T175G	p.S59A	TGCGGGAACCGGG	.	105	9	42	1	.	511	510	0	1	0
TIMELESS	8914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56814422	56814422	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	TIMELESS-159	NM_003920	exon26	c.A3159C	p.E1053D	CATGGCTTCCTCA	.	270	135	203	0	.	8	1	7	0	0
SLC6A15	55117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	85279278	85279278	+	Silent	SNP	A	A	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	SLC6A15-93	NM_018057	exon4	c.T510C	p.S170S	AGACTGAGAAAAA	.	232	62	193	0	.	0	0	0	0	0
GOLGA3	2802	broad.mit.edu	37	12	133359035	133359035	+	Silent	SNP	C	C	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	GOLGA3-95	NM_005895	exon17	c.G3312A	p.E1104E	TGACTCCTCAAGG	.	175	4	144	0	.	2	2	0	0	0
VWA8	23078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	42185853	42185853	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	.	NM_015058	exon39	c.C4736G	p.A1579G	AGGCCTGCCGTGT	.	108	33	94	0	.	11	4	7	0	0
TUBGCP3	10426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	113140459	113140459	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	TUBGCP3-90	NM_006322	exon22	c.G2572C	p.V858L	GCTGCACGATACC	.	281	103	343	0	.	3	3	0	0	0
PRKD1	5587	bcgsc.ca	37	14	30068292	30068292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	PRKD1-1534	NM_002742	exon15	c.G2107A	p.V703I	AGTGAACGATATT	.	69	4	74	0	.	23	23	0	0	0
LTK	4058	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41798200	41798200	+	Silent	SNP	G	G	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	LTK-1377	NM_002344	exon12	c.C1545A	p.A515A	GCCCAGGGCTCTG	.	137	65	146	1	.	0	0	0	0	0
ANKRD34C	390616	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	79587095	79587095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	.	NM_001146341	exon2	c.G1469A	p.G490D	CTAGTGGCTTAAA	.	61	17	71	1	.	0	0	0	0	0
CHTF18	63922	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	839242	839242	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	CHTF18-227	NM_022092	exon3	c.G319T	p.V107F	CAGGTGGTCAAGA	.	270	141	188	1	.	1	0	1	0	0
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	18849889	18849889	+	Silent	SNP	A	A	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	SMG1-1160	NM_015092	exon43	c.T7068C	p.N2356N	GCAAACATTGTAA	.	177	42	113	0	.	5	4	1	0	0
PRDM7	11105	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	90127013	90127013	+	Silent	SNP	C	C	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	PRDM7-92	NM_001098173	exon9	c.G969T	p.R323R	ATCATCCCGGGCA	.	417	111	349	1	.	0	0	0	0	0
CAMTA2	23125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4872081	4872081	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	CAMTA2-91	NM_001171167	exon23	c.A3646T	p.R1216W	AAGCCCTTCCAGC	.	88	24	81	0	.	21	9	12	0	0
SSH2	85464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27958364	27958364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	SSH2-92	NM_033389	exon15	c.G3767A	p.R1256H	GCTGAGCGCCTCA	.	136	81	93	0	.	10	3	7	0	0
SLFN13	146857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	33772567	33772567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	SLFN13-91	NM_144682	exon3	c.A133G	p.R45G	TAACTCTCGCCCT	.	88	46	73	0	.	7	2	5	0	0
LASP1	3927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37070728	37070728	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	LASP1-522	NM_006148	exon5	c.G508A	p.V170I	GCCCCGGGTGAGT	.	100	50	50	0	.	0	0	0	0	0
KRT35	3886	hgsc.bcm.edu	37	17	39633816	39633816	+	Missense_Mutation	SNP	A	A	C	rs200529540		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	KRT35-92	NM_002280	exon6	c.T1174G	p.C392G	TCTCACACTCCAG	.	119	6	88	0	A|0.999;C|0.000	0	0	0	0	0
KRT13	3860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39661375	39661375	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	KRT13-95	NM_002274	exon1	c.A428T	p.Q143L	GGGCTCTGCTTCA	.	248	155	171	0	.	0	0	0	0	0
SCRN2	90507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	45918192	45918192	+	Silent	SNP	A	A	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	SCRN2-91	NM_138355	exon2	c.T18C	p.P6P	GGAGTCAGGGCTC	.	243	48	188	0	.	21	18	3	0	0
AP3D1	8943	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	2130440	2130440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	AP3D1-90	NM_001261826	exon6	c.C559T	p.R187W	TCAGCCGGGGAAA	.	106	6	123	0	.	48	45	3	0	0
ZNF564	163050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12639471	12639471	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	ZNF564-91	NM_144976	exon2	c.C43A	p.L15I	CCTCAAGTGTGAA	.	86	18	94	0	.	1	1	0	0	0
ZNF493	284443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	21606232	21606232	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	ZNF493-516	NM_001076678	exon4	c.A771C	p.R257S	TAAGAGAATTCAT	.	72	38	91	0	.	6	3	3	0	0
ATP6V1B1	525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	71188132	71188132	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	ATP6V1B1-91	NM_001692	exon7	c.A667T	p.I223F	TTCGCCATCGTCT	.	279	158	219	1	.	5	0	5	0	0
CCDC74A	90557	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	132290624	132290624	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	CCDC74A-69	NM_138770	exon7	c.A989G	p.K330R	CCACCAAGAGCCT	.	473	177	456	0	.	66	42	24	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	EEF1B2-227	NM_021121	exon3	c.A127G	p.S43G	GTGTCCAGCCCAC	.	246	7	199	2	.	332	332	0	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025366	207025366	+	Silent	SNP	G	G	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	EEF1B2-227	NM_021121	exon3	c.G135A	p.P45P	CCCACCGCCTGCC	.	250	7	206	1	.	264	264	0	0	0
PTPRN	5798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220161482	220161482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	PTPRN-229	NM_002846	exon16	c.G2299A	p.A767T	GGCTGGCGTTGAT	.	199	46	125	0	.	0	0	0	0	0
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	225688235	225688235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	DOCK10-92	NM_014689	exon28	c.G3166A	p.V1056I	TGGCAACGCTGTG	.	224	121	191	0	.	3	3	0	0	0
SP140L	93349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	231264856	231264856	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	SP140L-23	NM_138402	exon15	c.T1212A	p.D404E	CTTGGATGAGTGT	.	389	213	237	0	.	1	0	1	0	0
FAM182A	284800	broad.mit.edu	37	20	26061818	26061818	+	RNA	SNP	G	G	C	rs112101451		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	.	.	.	.	.	TCTCCTGCTTAGA	.	88	3	111	1	G|0.994;C|0.006	0	0	0	0	0
TTI1	9675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	36641648	36641648	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	TTI1-94	NM_014657	exon3	c.C571G	p.P191A	ACCTTGGATGGTC	.	64	20	65	0	.	5	2	3	0	0
TSHZ2	128553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	51871576	51871576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	TSHZ2-232	NM_173485	exon2	c.G1579A	p.A527T	ACCACAGCCATCA	.	67	24	66	0	.	0	0	0	0	0
IFNAR1	3454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	34725063	34725063	+	Splice_Site	SNP	G	G	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	IFNAR1-91	NM_000629	exon9	c.1144-1G>A	.	TTTCTAGAGAAAA	.	18	14	16	0	.	0	0	0	0	0
TRIOBP	11078	hgsc.bcm.edu	37	22	38119757	38119757	+	Missense_Mutation	SNP	A	A	T	rs199535040		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	TRIOBP-136	NM_001039141	exon7	c.A1194T	p.Q398H	CACTCAACGAGAG	.	13	6	1	0	.	0	0	0	0	0
FAM227A	646851	broad.mit.edu	37	22	39032548	39032548	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	.	NM_001013647	exon6	c.A427C	p.S143R	TGGAGCTGTTGAA	.	126	4	145	0	.	1	1	0	0	0
SMC1B	27127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	45748333	45748333	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	SMC1B-229	NM_148674	exon22	c.C3423A	p.H1141Q	TTACCTGTGCACA	.	113	32	116	0	.	0	0	0	0	0
OXTR	5021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	8809352	8809352	+	Silent	SNP	G	G	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	OXTR-68	NM_000916	exon3	c.C522A	p.I174I	AGAGAAGATGTGC	.	187	101	86	0	.	0	0	0	0	0
FNDC3B	64778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	171969140	171969140	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	FNDC3B-155	NM_001135095	exon6	c.T599A	p.I200N	GCCAGATCGATCG	.	162	92	111	1	.	14	5	9	0	0
PARL	55486	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183558378	183558378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	PARL-90	NM_018622	exon7	c.T808C	p.Y270H	GTCCATATCTTCC	.	192	65	157	1	.	48	36	12	0	0
WDR1	9948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	10099338	10099338	+	Silent	SNP	A	A	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	WDR1-48	NM_017491	exon5	c.T555C	p.I185I	TACGCCAATTGTG	.	124	48	150	0	.	0	0	0	0	0
FAM13A	10144	bcgsc.ca	37	4	89772288	89772288	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	FAM13A-70	NM_014883	exon7	c.T890C	p.L297P	GGTTGCAGTACTC	.	70	4	60	0	.	0	0	0	0	0
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	114277121	114277121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	ANK2-583	NM_001148	exon38	c.C7347A	p.H2449Q	TTCACACAAAACC	.	80	28	87	0	.	0	0	0	0	0
AHRR	57491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	353963	353963	+	Silent	SNP	C	C	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	AHRR-225	NM_001242412	exon3	c.C193T	p.L65L	TCCAAGCTGGACA	.	193	67	147	0	.	0	0	0	0	0
TRAPPC13	80006	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	64956553	64956553	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	.	NM_001093755	exon10	c.T726G	p.Y242X	AGCATATTTGCAA	.	234	86	243	1	.	8	5	3	0	0
LIX1	167410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	96443096	96443096	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	LIX1-92	NM_153234	exon3	c.G355T	p.E119X	CACTTTCCATAAT	.	137	38	131	0	.	5	3	2	0	0
HIST1H2BN	8341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	27806755	27806755	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	HIST1H2BN-68	NM_003520	exon1	c.G316A	p.E106K	CCAGGGGAGCTGG	.	62	23	51	0	.	0	0	0	0	0
PPP1R10	5514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30572781	30572781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	PPP1R10-660	NM_002714	exon11	c.C944T	p.T315M	GCAGCCGTAGGTG	.	89	29	73	0	.	4	3	1	0	0
UNC5CL	222643	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	40999454	40999454	+	Missense_Mutation	SNP	T	T	A	rs145811250	byfrequency;alternate_allele	TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	UNC5CL-92	NM_173561	exon6	c.A1085T	p.N362I	ATCTCATTGGTTA	.	170	64	199	0	T|0.998;C|0.002	10	7	3	0	0
ACTB	60	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	5567473	5567473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	ACTB-226	NM_001101	exon6	c.T1034C	p.I345T	GCCAGGATGGAGC	.	407	193	230	1	.	2570	1389	1178	1	1
AGK	55750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141352597	141352597	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	AGK-290	NM_018238	exon16	c.G1142C	p.G381A	CAGGGGGCTCTTT	.	189	89	102	0	.	13	5	8	0	0
NUGGC	389643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	27913490	27913490	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	.	NM_001010906	exon10	c.A1198C	p.K400Q	TCAGTTTTTCCTT	.	37	13	62	0	.	0	0	0	0	0
NUGGC	389643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	27913492	27913492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	.	NM_001010906	exon10	c.A1196G	p.E399G	AGTTTTTCCTTGA	.	36	13	62	0	.	0	0	0	0	0
ENPP2	5168	bcgsc.ca	37	8	120628549	120628549	+	Silent	SNP	G	G	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	ENPP2-292	NM_001130863	exon8	c.C733A	p.R245R	GCCCTCGCAGATG	.	57	4	42	0	.	6	6	0	0	0
NUP188	23511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131735460	131735460	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	NUP188-207	NM_015354	exon12	c.A1135G	p.M379V	GCATGCATGTGTG	.	57	16	66	0	.	2	0	2	0	0
PNMA3	29944	broad.mit.edu	37	X	152226011	152226011	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	PNMA3-600	NM_013364	exon2	c.A599G	p.E200G	AGGGGGAAAAGAG	.	80	12	58	3	.	0	0	0	0	0
KIAA1751	85452	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	1891408	1891409	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	KIAA1751-69	NM_001080484	exon15	c.1755_1756del	p.585_586del	.	.	214	77	259	0	.	0	0	0	0	0
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	19524166	19524172	+	Frame_Shift_Del	DEL	ATTACGA	ATTACGA	-	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	ATTACGA	ATTACGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	UBR4-612	NM_020765	exon7	c.885_891del	p.295_297del	.	.	77	28	100	0	.	0	0	0	0	0
SPOCD1	90853	hgsc.bcm.edu	37	1	32266188	32266191	+	Frame_Shift_Del	DEL	CCAG	CCAG	-	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	CCAG	CCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	SPOCD1-158	NM_144569	exon4	c.1453_1456del	p.485_486del	.	.	122	55	102	0	.	0	0	0	0	0
FNDC7	163479	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	109265207	109265229	+	Frame_Shift_Del	DEL	GAAAACTGGTATGTAAACAAGAG	GAAAACTGGTATGTAAACAAGAG	-	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	GAAAACTGGTATGTAAACAAGAG	GAAAACTGGTATGTAAACAAGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	FNDC7-92	NM_001144937	exon5	c.849_856del	p.283_286del	.	.	54	13	72	0	.	0	0	0	0	0
ANK3	288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	61832051	61832054	+	Frame_Shift_Del	DEL	TTGT	TTGT	-	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	TTGT	TTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	ANK3-107	NM_020987	exon37	c.8585_8588del	p.2862_2863del	.	.	85	13	129	0	.	0	0	0	0	0
ANK3	288	hgsc.bcm.edu	37	10	61832052	61832061	+	Frame_Shift_Del	DEL	TGTTAGTGGC	TGTTAGTGGC	-	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	TGTTAGTGGC	TGTTAGTGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	ANK3-107	NM_020987	exon37	c.8578_8587del	p.2860_2863del	.	.	87	18	130	0	.	0	0	0	0	0
ANK3	288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	61832057	61832061	+	Frame_Shift_Del	DEL	GTGGC	GTGGC	-	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	GTGGC	GTGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	ANK3-107	NM_020987	exon37	c.8578_8582del	p.2860_2861del	.	.	78	13	128	0	.	0	0	0	0	0
MSS51	118490	hgsc.bcm.edu;bcgsc.ca	37	10	75185695	75185695	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	.	NM_001024593	exon5	c.943delA	p.T315fs	.	.	140	33	151	0	.	0	0	0	0	0
ACSS1	84532	broad.mit.edu;bcgsc.ca	37	20	25028726	25028755	+	In_Frame_Del	DEL	GGTGATCCTCACTTCCGTTCCAGGCTCATC	GGTGATCCTCACTTCCGTTCCAGGCTCATC	-	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	GGTGATCCTCACTTCCGTTCCAGGCTCATC	GGTGATCCTCACTTCCGTTCCAGGCTCATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	ACSS1-92	NM_001252677	exon2	c.397_426del	p.133_142del	CCTGTAGGTGATC	.	67	7	112	0	.	0	0	0	0	0
UBA6	55236	hgsc.bcm.edu	37	4	68536261	68536261	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	UBA6-90	NM_018227	exon8	c.596delT	p.F199fs	.	.	96	21	106	0	.	0	0	0	0	0
UBA6	55236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	68536260	68536261	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	UBA6-90	NM_018227	exon8	c.597_598insA	p.F199fs	.	.	96	23	106	0	.	0	0	0	0	0
UBA6	55236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	68536261	68536262	+	Nonsense_Mutation	INS	-	-	TT	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	UBA6-90	NM_018227	exon8	c.596_597insAA	p.F199_G200delinsX	.	.	96	23	104	0	.	0	0	0	0	0
CCDC113	29070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	58292369	58292370	+	Missense_Mutation	DNP	GG	GG	CT	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	CCDC113-90	NM_001142302	exon3	c.G327T	p.G163A	GAAAGGGAGTATT	.	128.0	53.0	138.0	0.0	.	0	0	0	0	0
TIMM17B	10245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	48751030	48751031	+	Missense_Mutation	DNP	GC	GC	CT	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	TIMM17B-131	NM_001167947	exon8	c.G650A	p.S217K	TGATAGCTGGGGT	.	92.0	29.0	104.0	0.0	.	0	0	0	0	0
METTL8	79828	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	172195861	172195862	+	Missense_Mutation	DNP	GA	GA	AG	novel		TCGA-A4-A4ZT-01A-11D-A26P-10	TCGA-A4-A4ZT-10A-01D-A26P-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	483bb781-0179-42e1-bf9c-487b240769b8	3c59a740-98eb-4a0d-8694-ac30ab89b553	.	METTL8-91	.	.	.	p.P147S	AGTAGGACAGTGC	.	98	22	64	0	.	0	0	0	0	0