Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PRKCZ	5590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	2066777	2066777	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	PRKCZ-1465	NM_002744	exon5	c.C411T	p.R137R	CAAGCGCTTTAAC	.	32	18	41	0	.	0	0	0	0	0
LRRC8C	84230	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	90180077	90180077	+	Missense_Mutation	SNP	A	A	G	rs113075842		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	LRRC8C-97	NM_032270	exon3	c.A1948G	p.T650A	AGCATCACCTACA	.	118	37	115	2	A|0.500;G|0.500	0	0	0	0	0
ZNF644	84146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	91403569	91403569	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ZNF644-155	NM_201269	exon4	c.C3161A	p.S1054X	TGATTTGATAATC	.	37	16	38	0	.	5	4	1	0	0
ADORA3	140	broad.mit.edu	37	1	112026372	112026372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ADORA3-156	NM_020683	exon6	c.C981A	p.N327K	CAAAGTGTTGCCT	.	110	5	96	0	.	1	1	0	0	0
SUSD4	55061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	223536686	223536686	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	SUSD4-68	NM_017982	exon2	c.A82G	p.R28G	AGAGTCTCTGGGG	.	132	44	142	0	.	0	0	0	0	0
SNAP47	116841	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	227935595	227935595	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	SNAP47-91	NM_053052	exon2	c.T293A	p.I98K	CCAGCATAGTTGA	.	86	37	98	1	.	19	10	9	0	0
ARHGAP22	58504	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	49659052	49659052	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ARHGAP22-228	NM_001256024	exon9	c.G1168C	p.E390Q	TGACCTCCTCGGA	.	60	25	82	0	.	2	2	0	0	0
DNA2	1763	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	70209856	70209856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	.	NM_001080449	exon6	c.A868G	p.T290A	ATTTTGTTTTATA	.	87	37	97	1	.	0	0	0	0	0
ZNF408	79797	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46726233	46726233	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ZNF408-90	NM_024741	exon5	c.A983C	p.Q328P	GAGCCCAGCAGTC	.	49	17	56	1	.	12	5	7	0	0
PPP1CA	5499	ucsc.edu;bcgsc.ca	37	11	67168351	67168351	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	PPP1CA-659	NM_001008709	exon3	c.T260G	p.F87C	TACTCAAATAGTC	.	76	22	109	2	.	214	117	97	0	0
CAPN5	726	broad.mit.edu	37	11	76823693	76823693	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	CAPN5-90	NM_004055	exon4	c.G356A	p.G119D	ACGCGGGCATCTT	.	74	4	98	0	.	39	39	0	0	0
MAML2	84441	broad.mit.edu	37	11	95825221	95825221	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	MAML2-850	NM_032427	exon2	c.G1974A	p.Q658Q	CTGCTGCTGTTGT	.	54	3	59	1	.	7	7	0	0	0
GRIA4	2893	bcgsc.ca	37	11	105623882	105623882	+	Silent	SNP	A	A	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	GRIA4-230	NM_001077244	exon4	c.A423T	p.A141A	AGGAGCACTCTTG	.	132	39	123	3	.	0	0	0	0	0
DDN	23109	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49390815	49390815	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	DDN-90	NM_015086	exon2	c.T1844A	p.V615E	CGGGACACGGCTT	.	28	13	25	0	.	0	0	0	0	0
LRIG3	121227	broad.mit.edu	37	12	59274493	59274493	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	LRIG3-229	NM_153377	exon13	c.C1671T	p.G557G	CACCTCGCCACCT	.	159	4	103	0	.	6	6	0	0	0
LYZ	4069	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	69743944	69743944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	LYZ-226	NM_000239	exon2	c.G193T	p.A65S	TACAATGCTGGAG	.	207	65	139	1	.	314	314	0	0	0
ZIC2	7546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	100635322	100635322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ZIC2-90	NM_007129	exon1	c.G1004A	p.C335Y	TCCCCTGCCCCTT	.	87	26	114	0	.	0	0	0	0	0
SCFD1	23256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	31175075	31175075	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	SCFD1-226	NM_016106	exon18	c.A1537T	p.T513S	AGCACTACCACTA	.	70	20	58	0	.	26	14	11	0	1
TMEM260	0	broad.mit.edu;bcgsc.ca	37	14	57072352	57072352	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	.	NM_017799	exon5	c.A587C	p.Y196S	TACTCTATGTTTT	.	112	42	105	2	.	7	3	4	0	0
ZFYVE26	23503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	68252617	68252617	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ZFYVE26-162	NM_015346	exon18	c.G3262A	p.D1088N	CCTGATCTAGCTG	.	80	26	116	0	.	3	1	2	0	0
EXD2	55218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	69697234	69697234	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	.	NM_001193361	exon4	c.G636C	p.E212D	CGCTGAGACTGTT	.	68	21	89	0	.	18	6	12	0	0
ADAM20	8748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	70989617	70989617	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ADAM20-226	NM_003814	exon2	c.T2008G	p.C670G	GGATGCAGATCTT	.	103	36	122	0	.	0	0	0	0	0
ELMSAN1	91748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	74206660	74206660	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	.	NM_194278	exon2	c.T52A	p.F18I	CCCCGAAGAGGCA	.	39	15	55	0	.	3	2	1	0	0
BCL2L10	10017	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	52404725	52404725	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	BCL2L10-227	NM_020396	exon1	c.T199A	p.Y67N	CGAGGTAGGCGGA	.	31	12	61	0	.	1	1	0	0	0
ULK3	25989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75132623	75132623	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ULK3-290	NM_001099436	exon6	c.G648A	p.R216R	GAACGACCTGGAG	.	40	16	41	0	.	14	11	3	0	0
CLDN9	9080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3063765	3063765	+	Silent	SNP	C	C	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	CLDN9-90	NM_020982	exon1	c.C402A	p.I134I	GCTCATCCCTGTG	.	102	55	82	0	.	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	448	24	295	15	.	35	3	32	0	0
RPL19	6143	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37358657	37358657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	RPL19-90	NM_000981	exon3	c.C200T	p.T67I	AAAACACCTTGGC	.	118	61	100	1	.	2449	1108	1338	2	1
KRT35	3886	bcgsc.ca	37	17	39636925	39636925	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	KRT35-92	NM_002280	exon1	c.C425A	p.P142H	TAGTCAGGGCACA	.	43	4	54	0	.	0	0	0	0	0
TOB1	10140	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48941072	48941072	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	TOB1-226	NM_005749	exon2	c.A307T	p.I103F	CACCAATTTGGTA	.	182	45	134	1	.	105	73	31	0	1
SMG8	55181	hgsc.bcm.edu	37	17	57288259	57288259	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	SMG8-93	NM_018149	exon1	c.C847A	p.Q283K	CGGAACCAAGACC	.	74	5	41	0	.	4	4	0	0	0
DDX5	1655	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	62496852	62496852	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	DDX5-228	NM_004396	exon12	c.C1256G	p.P419R	GAGTTAGGGTAGT	.	116	29	109	1	.	166	114	52	0	0
MGAT5B	146664	broad.mit.edu	37	17	74944059	74944059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	MGAT5B-93	NM_198955	exon15	c.G2098T	p.A700S	CTGCGGGCCTGGC	.	46	7	45	2	.	0	0	0	0	0
DNAH17	8632	bcgsc.ca	37	17	76565539	76565539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	DNAH17-142	NM_173628	exon8	c.G1115A	p.G372D	GAGATGCCACTCA	.	121	6	81	0	.	0	0	0	0	0
RAB31	11031	broad.mit.edu	37	18	9815181	9815181	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	RAB31-205	NM_006868	exon5	c.G342T	p.M114I	TGTAATGGCCATC	.	86	4	72	0	.	34	34	0	0	0
POLRMT	5442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	623528	623528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	POLRMT-92	NM_005035	exon6	c.A1216G	p.M406V	GCTCCATGTGGAG	.	52	11	71	0	.	18	13	5	0	0
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10610566	10610566	+	Silent	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	KEAP1-637	NM_012289	exon2	c.C144A	p.G48G	GCGGTTGCCATGC	.	63	24	62	0	.	19	12	7	0	0
RFX1	5989	broad.mit.edu;ucsc.edu	37	19	14080923	14080923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	RFX1-92	NM_002918	exon10	c.A1379G	p.Y460C	TGGCAGTAGAGGG	.	102	4	106	1	.	9	6	3	0	0
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36229181	36229181	+	Splice_Site	SNP	A	A	G	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	MLL4-697	NM_014727	exon37	c.7873-2A>G	.	CCCTGCAGGGCAT	.	36	15	56	0	.	3	0	3	0	0
TIMM50	92609	broad.mit.edu	37	19	39971399	39971399	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	TIMM50-91	NM_001001563	exon1	c.A215C	p.H72P	CCGTCCACCCGCC	.	68	17	72	12	.	0	0	0	0	0
CEACAM16	388551	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45211204	45211204	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	CEACAM16-23	NM_001039213	exon6	c.G1012A	p.V338M	CTGACCGTGCAGG	.	87	25	111	1	.	0	0	0	0	0
ATRAID	51374	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27436144	27436144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	.	NM_080592	exon2	c.A364G	p.N122D	TGCCTGAATCAGA	.	83	23	74	1	.	437	306	131	0	0
FAM98A	25940	broad.mit.edu	37	2	33810281	33810281	+	Silent	SNP	T	T	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	FAM98A-91	NM_015475	exon8	c.A1119G	p.G373G	TCTTCCTCCCCCT	.	124	7	73	4	.	49	49	0	0	0
TMEM178A	130733	broad.mit.edu	37	2	39934299	39934299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	.	NM_152390	exon3	c.G625T	p.V209L	CAGCACGTGGCTG	.	101	3	64	0	.	1	1	0	0	0
CLEC4F	165530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	71036918	71036918	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	CLEC4F-95	NM_173535	exon6	c.C1611T	p.S537S	GCGCCAGGAGCCC	.	88	25	57	0	.	0	0	0	0	0
RMND5A	64795	broad.mit.edu;bcgsc.ca	37	2	86947925	86947925	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	RMND5A-92	NM_022780	exon1	c.G135A	p.Q45Q	CCTGCAGAGCCAC	.	52	22	94	1	.	0	0	0	0	0
SCN3A	6328	ucsc.edu;bcgsc.ca	37	2	165948982	165948982	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	SCN3A-141	NM_006922	exon27	c.T4589C	p.I1530T	ATGCTGATATCAA	.	228	125	180	4	.	0	0	0	0	0
SCN1A	6323	ucsc.edu;bcgsc.ca	37	2	166892799	166892799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	SCN1A-147	NM_001165963	exon16	c.C3188T	p.S1063F	TGATTGGACATAC	.	224	54	179	3	.	0	0	0	0	0
SPEG	10290	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220342479	220342479	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	SPEG-383	NM_005876	exon21	c.T4798C	p.F1600L	AGCGACTTTTATG	.	85	46	68	1	.	0	0	0	0	0
KIF1A	547	hgsc.bcm.edu	37	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	KIF1A-91	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	98	5	74	0	.	3	3	0	0	0
PASK	23178	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	242082279	242082279	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	PASK-536	NM_001252122	exon2	c.C169A	p.L57I	GGCAGAGTCTGGA	.	56	30	53	2	.	2	1	1	0	0
HDLBP	3069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	242196033	242196033	+	Silent	SNP	T	T	C	rs200251201		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	HDLBP-290	NM_001243900	exon7	c.A747G	p.L249L	GATGAGTAAGACT	.	131	35	119	0	T|0.999;C|0.001	114	84	30	0	0
FRG1B	284802	bcgsc.ca	37	20	29623218	29623218	+	RNA	SNP	A	A	G	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	FRG1B-22	.	.	.	.	CTCGACAATGGTC	.	805	44	733	20	.	53	42	11	0	0
COL9A3	1299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61467549	61467549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	COL9A3-514	NM_001853	exon28	c.G1412T	p.R471L	GCAGTCGAGGGGA	.	81	22	82	0	.	0	0	0	0	0
GABPA	2551	bcgsc.ca	37	21	27130324	27130324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	GABPA-227	NM_001197297	exon6	c.C557A	p.P186H	TAGATCCCATACA	.	245	85	212	6	.	0	0	0	0	0
DIP2A	23181	bcgsc.ca	37	21	47961748	47961748	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	DIP2A-24	NM_206891	exon18	c.G2116T	p.D706Y	AGAGTGGATACTG	.	105	5	100	0	.	2	2	0	0	0
TANGO2	128989	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	22	20030918	20030918	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	.	NM_152906	exon3	c.C97T	p.P33S	AGCCGACCCTCCA	.	95	28	75	0	.	22	17	5	0	0
CELSR3	1951	bcgsc.ca	37	3	48692763	48692763	+	Silent	SNP	T	T	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	CELSR3-523	NM_001407	exon5	c.A4806T	p.T1602T	ATGCACTGTATGC	.	75	26	104	3	.	0	0	0	0	0
BSN	8927	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49689059	49689059	+	Silent	SNP	C	C	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	BSN-97	NM_003458	exon5	c.C2070A	p.I690I	CGGCATCTCTAGC	.	88	35	107	1	.	0	0	0	0	0
CADM2	253559	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	85851274	85851274	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	CADM2-228	NM_001167675	exon3	c.G166C	p.D56H	AGGGTTGATCAAA	.	110	6	113	0	.	0	0	0	0	0
PROS1	5627	broad.mit.edu	37	3	93646100	93646100	+	Silent	SNP	C	C	T	rs6121	by1000genomes;alternate_allele	TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	PROS1-153	NM_000313	exon2	c.G228A	p.P76P	CGTTTCCGGGTCA	.	119	4	91	0	C|0.999;A|0.001	0	0	0	0	0
SPICE1	152185	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113176133	113176133	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	SPICE1-70	NM_144718	exon13	c.G1507A	p.E503K	ACTCTTCCTGTGG	.	116	46	109	1	.	9	3	6	0	0
ALDH1L1	10840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	125826081	125826081	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ALDH1L1-156	NM_001270364	exon21	c.T2386G	p.F796V	GCTCAAAGAAGAA	.	56	36	32	0	.	0	0	0	0	0
PRKCI	5584	bcgsc.ca	37	3	170002334	170002334	+	Silent	SNP	T	T	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	PRKCI-1378	NM_002740	exon12	c.T1153C	p.L385L	AATGTATTACTGG	.	800	449	553	9	.	17	5	12	0	0
HTT	3064	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	3230734	3230734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	HTT-281	NM_002111	exon59	c.T8107C	p.S2703P	GTCAGATCCGTAA	.	54	21	55	1	.	0	0	0	0	0
DDX60L	91351	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	169382991	169382991	+	Silent	SNP	C	C	T	rs17612630	byfrequency;alternate_allele	TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	DDX60L-69	NM_001012967	exon5	c.G465A	p.T155T	AAGGTACGTTTGT	.	93	21	108	0	C|0.904;A|0.096	5	2	3	0	0
SLC12A7	10723	broad.mit.edu	37	5	1087140	1087140	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	SLC12A7-138	NM_006598	exon6	c.T553G	p.S185A	AGTAGGACCCGCC	.	110	20	113	11	.	0	0	0	0	0
LIFR	3977	bcgsc.ca	37	5	38506175	38506175	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	LIFR-1173	NM_002310	exon9	c.T1123G	p.F375V	CTGAAAAACTGTT	.	274	92	294	5	.	0	0	0	0	0
IK	3550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140034136	140034136	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	IK-67	NM_006083	exon7	c.A555C	p.E185D	AGAGGAAGAGGAA	.	467	155	516	1	.	75	48	27	0	0
PCDHA12	56137	broad.mit.edu	37	5	140256291	140256291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	.	NM_018903	exon1	c.G1234A	p.A412T	GACAGCGCCCTGG	.	174	8	171	0	.	0	0	0	0	0
PCDHGA11	56105	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140800833	140800833	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	.	NM_032091	exon1	c.G39A	p.L13L	TCGGCTGCTGCTG	.	39	12	42	0	.	0	0	0	0	0
CDKAL1	54901	broad.mit.edu;bcgsc.ca	37	6	20739778	20739778	+	Missense_Mutation	SNP	G	G	C	rs139954896	alternate_allele	TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	CDKAL1-92	NM_017774	exon6	c.G400C	p.V134L	AAAATCGTACTGG	.	45	11	60	1	G|1.000;A|0.000	3	2	1	0	0
NFYA	4800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	41059422	41059422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	NFYA-226	NM_002505	exon7	c.G703A	p.G235R	TCAGGAGGGATGG	.	55	21	58	0	.	0	0	0	0	0
FTSJ2	29960	bcgsc.ca	37	7	2275155	2275155	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	FTSJ2-91	NM_013393	exon3	c.C343A	p.H115N	ATATGTGAAGAAG	.	74	27	29	1	.	23	14	9	0	0
NOD1	10392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	30492406	30492406	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	NOD1-229	NM_006092	exon6	c.C627T	p.S209S	CAGCATGGACTTG	.	83	23	53	0	.	3	0	3	0	0
ZNF273	10793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	64388953	64388953	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ZNF273-90	NM_021148	exon4	c.C1247G	p.T416S	CCACAACTCTTAC	.	169	77	103	0	.	1	1	0	0	0
ABCB4	5244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	87049331	87049331	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ABCB4-96	NM_018850	exon19	c.A2377G	p.K793E	TTGCTTTAAAAGC	.	148	64	111	0	.	3	3	0	0	0
GIGYF1	64599	bcgsc.ca	37	7	100279776	100279776	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	GIGYF1-136	NM_022574	exon22	c.G2844A	p.T948T	TTCCAGCGTGTCC	.	58	4	36	0	.	32	32	0	0	0
SRRT	51593	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100485329	100485329	+	Silent	SNP	T	T	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	SRRT-92	NM_001128853	exon17	c.T2175C	p.P725P	GGGTCCTGAGTTT	.	189	62	123	2	.	1	0	1	0	0
PPP2CB	5516	bcgsc.ca	37	8	30651447	30651447	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	PPP2CB-658	NM_001009552	exon5	c.C724G	p.Q242E	CAAGCTGGTGGGC	.	350	122	380	5	.	109	53	56	0	0
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	48809814	48809814	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	PRKDC-1515	.	.	.	.	ACTTGACCAGATC	.	67	27	73	1	.	3	2	1	0	0
ST18	9705	broad.mit.edu	37	8	53077753	53077753	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ST18-95	NM_014682	exon12	c.C1237A	p.P413T	GCGTGGGACACTT	.	53	3	59	0	.	0	0	0	0	0
RB1CC1	9821	bcgsc.ca	37	8	53569322	53569322	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	RB1CC1-170	NM_001083617	exon15	c.C3067T	p.Q1023X	TTATTTGTTGGTT	.	103	26	101	2	.	7	7	0	0	0
BCOR	54880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	39932148	39932148	+	Silent	SNP	A	A	G	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	BCOR-229	NM_001123385	exon4	c.T2451C	p.T817T	TGTGTCAGTTTTA	.	72	36	97	0	.	3	0	3	0	0
ZC3H11A	9877	hgsc.bcm.edu	37	1	203787783	203787786	+	Frame_Shift_Del	DEL	GACA	GACA	-	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	GACA	GACA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ZC3H11A-515	NM_014827	exon6	c.140_143del	p.47_48del	.	.	86	22	107	0	.	0	0	0	0	0
THSD1	55901	hgsc.bcm.edu;bcgsc.ca	37	13	52971551	52971551	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	THSD1-94	NM_018676	exon3	c.837delC	p.P279fs	.	.	117	27	84	0	.	0	0	0	0	0
FOXN1	8456	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	26851949	26851949	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	FOXN1-226	NM_003593	exon2	c.552delC	p.L184fs	.	.	62	21	25	0	.	0	0	0	0	0
YIPF3	25844	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	43483379	43483379	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	YIPF3-90	NM_015388	exon3	c.349delA	p.I117fs	.	.	81	32	102	0	.	0	0	0	0	0
CAP1	10487	bcgsc.ca	37	1	40535490	40535491	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	CAP1-91	NM_006367	exon9	c.937_938insG	p.R313fs	CCCAAACGAGCCA	.	197	22	215	1	.	0	0	0	0	0
ATP2B1	490	hgsc.bcm.edu;bcgsc.ca	37	12	89992987	89992988	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ATP2B1-516	NM_001001323	exon19	c.3258_3259insTT	p.L1086fs	.	.	83	30	66	0	.	0	0	0	0	0
ACOX2	8309	hgsc.bcm.edu;bcgsc.ca	37	3	58519841	58519842	+	Frame_Shift_Ins	INS	-	-	TATATTT	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	ACOX2-90	NM_003500	exon4	c.355_356insAAATATA	p.H119fs	.	.	65	12	81	0	.	0	0	0	0	0
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	44747231	44747232	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-A5XZ-01A-11D-A31X-10	TCGA-A4-A5XZ-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	363096af-a78b-4834-a631-bebac9ce1659	9f1e35f9-8141-463b-a1b9-3fc7a83df607	.	OGDH-228	NM_002541	exon22	c.2847_2848insA	p.P949fs	.	.	102	38	55	0	.	0	0	0	0	0