Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
AGRN	375790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	987003	987003	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	AGRN-136	NM_198576	exon32	c.C5541A	p.F1847L	GGGATTCTCAGGA	.	54	19	17	0	.	246	148	97	0	1
KLHL21	9903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	6659179	6659179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	KLHL21-514	NM_014851	exon2	c.A1355G	p.D452G	CCGCAGTCCACCA	.	170	56	90	0	.	5	3	2	0	0
INPP5B	3633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	38343988	38343988	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	INPP5B-227	NM_005540	exon16	c.T1549C	p.C517R	CACGGCACTTCTC	.	80	19	42	0	.	0	0	0	0	0
PTGFR	5737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	78959108	78959108	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PTGFR-527	NM_000959	exon2	c.T680C	p.L227P	TTACACTTTTAAG	.	133	39	54	0	.	0	0	0	0	0
PTGFR	5737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	78959111	78959111	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PTGFR-527	NM_000959	exon2	c.T683C	p.L228S	CACTTTTAAGAGT	.	131	38	55	0	.	0	0	0	0	0
SLC6A17	388662	hgsc.bcm.edu	37	1	110740214	110740214	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SLC6A17-92	NM_001010898	exon11	c.A1808G	p.K603R	GGATCAAGGAGGA	.	22	11	7	0	.	0	0	0	0	0
PDE4DIP	9659	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	144874782	144874782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PDE4DIP-663	NM_014644	exon30	c.G4826A	p.S1609N	GAGGTGCTGCTGG	.	170	24	92	0	.	1	1	0	0	0
CELF3	11189	hgsc.bcm.edu	37	1	151678722	151678722	+	Silent	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	CELF3-91	NM_007185	exon10	c.A1104G	p.Q368Q	CTGCTGTTGCTGC	.	34	4	23	0	.	105	3	102	0	0
ASPM	259266	broad.mit.edu	37	1	197111690	197111690	+	Silent	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ASPM-615	NM_001206846	exon3	c.C1692A	p.P564P	CGAAGAGGGTGTT	.	133	7	56	0	.	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228520936	228520936	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	OBSCN-403	NM_001271223	exon69	c.G18639C	p.E6213D	TGATGAGGGCCAG	.	140	50	60	0	.	0	0	0	0	0
FMN2	56776	broad.mit.edu	37	1	240371139	240371139	+	Silent	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	FMN2-145	NM_020066	exon5	c.C3027T	p.P1009P	CATACCCCCTCCT	.	104	8	59	1	.	0	0	0	0	0
SKIDA1	387640	hgsc.bcm.edu	37	10	21805486	21805486	+	Silent	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	.	NM_207371	exon4	c.G1266A	p.E422E	TTCCTCCTCCTCC	.	53	7	35	0	.	2	2	0	0	0
BMS1	9790	broad.mit.edu;bcgsc.ca	37	10	43294061	43294061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	BMS1-93	NM_014753	exon12	c.G2235T	p.W745C	TGACTGGGATTTA	.	173	7	80	0	.	0	0	0	0	0
C10orf12	26148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	98741939	98741939	+	Silent	SNP	T	T	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	C10orf12-92	NM_015652	exon1	c.T792G	p.S264S	CACCTCTCACGAG	.	110	37	65	0	.	0	0	0	0	0
PPRC1	23082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	103906723	103906723	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PPRC1-227	NM_015062	exon9	c.G3974A	p.R1325H	TCAAGCGCCATCA	.	79	22	42	0	.	7	6	1	0	0
PDCD4	27250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	112655819	112655819	+	Silent	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PDCD4-291	NM_014456	exon11	c.A1323G	p.K441K	TTCCAAACAACTC	.	205	64	86	0	.	26	13	13	0	0
MUC2	4583	hgsc.bcm.edu;broad.mit.edu	37	11	1092948	1092948	+	Silent	SNP	C	C	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MUC2-90	NM_002457	exon30	c.C4767G	p.T1589T	CACCACCACTACG	.	88	7	47	0	.	0	0	0	0	0
KRTAP5-5	439915	broad.mit.edu	37	11	1651412	1651412	+	Silent	SNP	G	G	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	KRTAP5-5-23	NM_001001480	exon1	c.G342C	p.G114G	TGGGGGGTCCAAG	.	57	3	32	0	.	0	0	0	0	0
SLC22A10	387775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63065116	63065116	+	Silent	SNP	A	A	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SLC22A10-92	NM_001039752	exon4	c.A747T	p.G249G	CCTGGGAGGCTTG	.	156	64	85	0	.	0	0	0	0	0
SLC22A10	387775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63071636	63071636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SLC22A10-92	NM_001039752	exon8	c.A1342G	p.T448A	GCTGCTACTTTTT	.	75	26	41	0	.	0	0	0	0	0
UNC93B1	81622	broad.mit.edu	37	11	67763107	67763107	+	Silent	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	.	.	.	.	.	CAGGGCACTGCCC	.	161	6	61	1	.	143	142	0	1	0
NADSYN1	55191	ucsc.edu	37	11	71193000	71193000	+	Missense_Mutation	SNP	T	T	G	rs200077392		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	NADSYN1-92	NM_018161	exon13	c.T1079G	p.V360G	GCGGGGTGGACAG	.	48	18	41	16	.	43	29	14	0	0
MAML2	84441	broad.mit.edu	37	11	95825254	95825254	+	Silent	SNP	C	C	T	rs61749250		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MAML2-850	NM_032427	exon2	c.G1941A	p.Q647Q	CTGCTGCTGTTGT	.	76	4	40	1	.	1	1	0	0	0
NPAT	4863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	108043550	108043550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	NPAT-117	NM_002519	exon13	c.G2161A	p.D721N	TATCATCAGTATT	.	66	21	36	0	.	0	0	0	0	0
BCL9L	283149	hgsc.bcm.edu	37	11	118773516	118773516	+	Silent	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	BCL9L-229	NM_182557	exon6	c.G936T	p.P312P	AGGGGCCGGGGGT	.	10	5	3	0	.	0	0	0	0	0
RECQL	5965	broad.mit.edu	37	12	21630777	21630777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	RECQL-228	NM_032941	exon8	c.C827A	p.T276N	GTAAAAGTAAAAC	.	219	4	52	0	.	4	4	0	0	0
SOX5	6660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	23757377	23757377	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SOX5-655	NM_006940	exon9	c.T1108C	p.S370P	TAGGAGATACAGC	.	125	33	51	0	.	0	0	0	0	0
ADCY6	112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49168249	49168249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ADCY6-90	NM_020983	exon14	c.C2219T	p.A740V	CTATGTGCCCGTG	.	182	88	84	0	.	6	4	2	0	0
FAM186A	121006	broad.mit.edu	37	12	50746166	50746166	+	Silent	SNP	G	G	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	FAM186A-68	NM_001145475	exon4	c.C4449G	p.L1483L	AGGGATGAGAGGG	.	408	6	173	1	.	0	0	0	0	0
HOXC4	3221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	54447788	54447788	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	HOXC4-91	NM_014620	exon3	c.T82A	p.Y28N	AATAGCTACATCC	.	205	40	72	0	.	2	1	1	0	0
NAB2	4665	broad.mit.edu	37	12	57485520	57485520	+	Silent	SNP	T	T	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	NAB2-92	NM_005967	exon2	c.T696G	p.G232G	TGGGGGTGGTCCA	.	166	16	63	7	.	11	11	0	0	0
TPH2	121278	broad.mit.edu	37	12	72425407	72425407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	TPH2-93	NM_173353	exon11	c.G1405A	p.D469N	GTGCAGGACCTTC	.	244	5	86	0	.	0	0	0	0	0
RNF10	9921	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	120984362	120984362	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	RNF10-227	NM_014868	exon2	c.C312A	p.S104R	CAGCAGCAAACTC	.	165	40	46	2	.	10	8	2	0	0
HCAR1	27198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	123214112	123214112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	HCAR1-156	NM_032554	exon1	c.G775A	p.A259T	GCAGGGCCCCATG	.	213	92	78	0	.	0	0	0	0	0
GPR133	283383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	131471648	131471648	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	GPR133-191	NM_198827	exon6	c.T499G	p.W167G	CCCTATTGGACTC	.	120	25	46	0	.	0	0	0	0	0
COG6	57511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	40251678	40251678	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	COG6-227	NM_001145079	exon5	c.A502G	p.S168G	GAAATGAGTCTTC	.	113	36	53	0	.	0	0	0	0	0
IPO5	3843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	98667795	98667795	+	Silent	SNP	A	A	T	rs61750357	alternate_allele	TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	IPO5-228	NM_002271	exon23	c.A2391T	p.V797V	TGAAGTAATGGGA	.	167	61	85	0	.	0	0	0	0	0
CCDC168	643677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	103401232	103401232	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	.	NM_001146197	exon4	c.G1815C	p.K605N	CTTTTCCTTTTTA	.	169	62	75	0	.	0	0	0	0	0
ATP11A	23250	hgsc.bcm.edu;broad.mit.edu	37	13	113474213	113474213	+	Splice_Site	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ATP11A-138	NM_015205	exon8	c.675-1G>A	.	TCGCCAGGTTCGT	.	57	18	10	0	.	0	0	0	0	0
LTBP2	4053	broad.mit.edu;ucsc.edu	37	14	74970233	74970233	+	Silent	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	LTBP2-92	NM_000428	exon32	c.C4659T	p.C1553C	GGGGCTGCAGAAG	.	43	4	26	0	.	0	0	0	0	0
ZSCAN29	146050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43653718	43653718	+	Silent	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZSCAN29-91	NM_152455	exon5	c.A2112G	p.K704K	ATAAGGTTTCTCT	.	155	43	64	0	.	2	2	0	0	0
IGDCC4	57722	broad.mit.edu	37	15	65678318	65678318	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	IGDCC4-93	NM_020962	exon18	c.A3031C	p.S1011R	GGGGGCTGGGGGG	.	59	10	33	5	.	0	0	0	0	0
FAM154B	283726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	82575198	82575198	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	FAM154B-70	NM_001008226	exon3	c.C992A	p.T331K	TCCCAACAGAGAG	.	402	132	171	0	.	0	0	0	0	0
ALPK3	57538	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	85407685	85407685	+	Silent	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ALPK3-337	NM_020778	exon12	c.G5118A	p.L1706L	CCCACTGTATCTG	.	122	47	55	0	.	0	0	0	0	0
NDUFB10	4716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2011289	2011289	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	NDUFB10-90	NM_004548	exon2	c.A266T	p.D89V	AGAGGGACTAGTA	.	94	32	38	0	.	3	2	1	0	0
TRAP1	10131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	3712967	3712967	+	Silent	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	TRAP1-226	NM_016292	exon15	c.C1710T	p.A570A	CTCGGCGGCTGCG	.	27	10	12	0	.	4	4	0	0	0
PKD1L3	342372	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72011209	72011209	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PKD1L3-68	.	.	.	.	TGGAACCCCAGGT	.	90	37	51	0	.	0	0	0	0	0
KDM6B	23135	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	7748926	7748926	+	Silent	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	KDM6B-205	NM_001080424	exon4	c.C54A	p.A18A	CTTTGCCCTTGGG	.	184	40	72	0	.	2	2	0	0	0
ELAC2	60528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	12898190	12898190	+	Silent	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ELAC2-90	NM_018127	exon21	c.T1920C	p.C640C	CACCAGACAGGTC	.	121	60	41	0	.	2	2	0	0	0
TBC1D28	254272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18541949	18541949	+	Silent	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	TBC1D28-91	NM_001039397	exon7	c.T264C	p.Y88Y	GCTCCTATATTTT	.	142	60	59	0	.	0	0	0	0	0
MSL1	339287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38282491	38282491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MSL1-68	NM_001012241	exon3	c.A35G	p.N12S	AGGATAACGAGAA	.	231	110	92	0	.	49	22	27	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274087	39274087	+	Missense_Mutation	SNP	G	G	C	rs80322557		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	.	NM_033059	exon1	c.C481G	p.L161V	GACGCAGGCAGCA	.	136	7	46	2	G|0.500;C|0.500	0	0	0	0	0
C17orf64	124773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	58503225	58503225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	C17orf64-271	NM_181707	exon2	c.G133A	p.D45N	GGCCTGGATCAGG	.	118	62	64	0	.	0	0	0	0	0
FHOD3	80206	broad.mit.edu	37	18	34261469	34261469	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	FHOD3-139	NM_025135	exon12	c.A1381G	p.R461G	AGAGAGAGGCGGC	.	301	8	148	0	.	1	1	0	0	0
PIAS2	9063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	44416377	44416377	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PIAS2-662	NM_173206	exon9	c.C1145T	p.T382I	ATCCAGGTGGGCT	.	329	44	153	0	.	3	3	0	0	0
PRAM1	84106	ucsc.edu	37	19	8555985	8555985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	.	NM_032152	exon5	c.A1633G	p.R545G	GGCACCTGAGCGC	.	42	4	13	1	.	3	3	0	0	0
ILVBL	10994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15226103	15226103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ILVBL-92	NM_006844	exon16	c.T1859C	p.I620T	CTCCCAATGAGGA	.	76	24	58	0	.	341	179	161	0	1
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	31040126	31040126	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZNF536-144	NM_014717	exon4	c.C3600G	p.D1200E	CAAAGACAGCAGC	.	81	30	59	0	.	0	0	0	0	0
ZNF146	7705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36727612	36727612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZNF146-90	NM_001099638	exon3	c.C270A	p.H90Q	TACGCACCAGAAA	.	190	79	90	0	.	8	6	2	0	0
GYS1	2997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49485593	49485593	+	Silent	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	GYS1-524	NM_002103	exon7	c.T981C	p.F327F	GGCGATAAAGAAG	.	171	62	82	0	.	2	1	1	0	0
TMEM86B	255043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55740079	55740079	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	TMEM86B-90	NM_173804	exon1	c.A31G	p.K11E	GAGTCTTCAGGGT	.	107	40	68	0	.	10	5	5	0	0
EML6	400954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55191764	55191764	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	.	NM_001039753	exon37	c.C5388A	p.F1796L	TGACTTCTATGAC	.	183	71	104	0	.	0	0	0	0	0
ANXA4	307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	70039804	70039804	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ANXA4-90	NM_001153	exon8	c.A497T	p.N166I	AAGGAAATTATCT	.	78	28	19	0	.	145	80	65	0	0
MPHOSPH10	10199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	71360588	71360588	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MPHOSPH10-93	NM_005791	exon2	c.T650G	p.I217R	AAAACATAGAAAA	.	394	162	186	0	.	2	0	2	0	0
IMMT	10989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	86371557	86371557	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	IMMT-91	NM_006839	exon15	c.A2111T	p.E704V	GCTAGCTCCAGAT	.	146	43	58	0	.	113	62	50	0	1
SMPD4	55627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	130912744	130912744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SMPD4-90	NM_017951	exon15	c.C1495T	p.P499S	GCTTGGGGCTGAC	.	83	20	59	0	.	6	4	2	0	0
XIRP2	129446	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	168103277	168103277	+	Missense_Mutation	SNP	T	T	A	rs200235198	alternate_allele	TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	XIRP2-104	NM_152381	exon9	c.T5375A	p.L1792Q	TGTTACTGAAGAA	.	276	74	139	2	T|0.999;C|0.000	0	0	0	0	0
DNAJC10	54431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	183594619	183594619	+	Silent	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	DNAJC10-273	NM_001271581	exon8	c.G678T	p.V226V	TTTAGTGAGTTTT	.	346	111	147	0	.	0	0	0	0	0
SF3B1	23451	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	198285205	198285205	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SF3B1-140	NM_012433	exon4	c.A362T	p.K121M	CTATGCTTTTTGT	.	574	204	281	1	.	6	6	0	0	0
SF3B1	23451	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	198285207	198285207	+	Silent	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SF3B1-140	NM_012433	exon4	c.A360G	p.K120K	ATGCTTTTTGTAT	.	566	198	281	2	.	6	6	0	0	0
HSPE1	3336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	198365881	198365881	+	Silent	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	HSPE1-226	NM_002157	exon2	c.A87G	p.G29G	CAAAGGAGGCATT	.	367	141	187	0	.	825	422	403	0	0
NIF3L1	60491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	201768315	201768315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	NIF3L1-91	NM_001136039	exon7	c.C1048A	p.L350I	TCTGACCTTCGAG	.	241	85	106	0	.	32	20	12	0	0
RNF25	64320	broad.mit.edu	37	2	219529245	219529245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	RNF25-227	NM_022453	exon10	c.C815T	p.A272V	GGTTCCGCAGGGG	.	35	3	19	0	.	30	30	0	0	0
NYAP2	57624	broad.mit.edu	37	2	226447157	226447157	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	.	NM_020864	exon4	c.G1024A	p.A342T	CCCCCCGCCCCCG	.	135	6	60	0	.	0	0	0	0	0
POLR3F	10621	broad.mit.edu	37	20	18448195	18448195	+	Silent	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	POLR3F-90	NM_006466	exon1	c.G45A	p.P15P	GGATCCGGTCGAA	.	242	6	120	0	.	1	1	0	0	0
CST1	1469	broad.mit.edu	37	20	23728528	23728528	+	Silent	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	CST1-91	NM_001898	exon3	c.G351A	p.L117L	AGAGCACAACTGT	.	134	8	89	2	.	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29628278	29628278	+	RNA	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	FRG1B-22	.	.	.	.	AATGAAGCAGGGG	.	1279	52	593	14	.	51	51	0	0	0
HM13	81502	ucsc.edu;bcgsc.ca	37	20	30156952	30156952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	HM13-153	NM_178581	exon13	c.C1211T	p.A404V	ATCCAGCGGCAGT	.	273	82	159	3	.	366	242	123	0	1
AHCY	191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	32878681	32878681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	AHCY-91	NM_000687	exon6	c.G622A	p.D208N	TCACATCTGTGGC	.	112	42	60	0	.	69	44	24	0	1
KIAA1755	85449	broad.mit.edu	37	20	36874404	36874404	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	KIAA1755-95	NM_001029864	exon2	c.A128G	p.D43G	AGCCCATCCCCCT	.	84	4	41	0	.	0	0	0	0	0
SLC13A3	64849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	45217868	45217868	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SLC13A3-91	NM_022829	exon7	c.T947C	p.I316T	GTTCTTATCTCAG	.	152	35	77	0	.	0	0	0	0	0
C21orf33	8209	broad.mit.edu;bcgsc.ca	37	21	45563146	45563146	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	C21orf33-91	NM_004649	exon6	c.T581G	p.V194G	TGACTGTGGGCCA	.	131	51	47	1	.	187	87	100	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46011400	46011400	+	Silent	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	KRTAP10-6-90	NM_198688	exon1	c.C966T	p.S322S	ACCACAGGAGGGG	.	176	5	88	1	.	0	0	0	0	0
MTMR3	8897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30403186	30403186	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MTMR3-292	NM_153050	exon10	c.A755C	p.H252P	ATGAGCATCTGGT	.	92	28	40	0	.	0	0	0	0	0
CARD10	29775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37898635	37898635	+	Silent	SNP	C	C	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	CARD10-662	NM_014550	exon11	c.G1761C	p.R587R	ACAGCCCCGAGCC	.	63	21	27	0	.	15	10	5	0	0
TMF1	7110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	69072460	69072460	+	Silent	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	TMF1-90	NM_007114	exon17	c.A3150G	p.Q1050Q	GTACCTTTGATCC	.	196	61	80	0	.	3	0	3	0	0
BBX	56987	broad.mit.edu	37	3	107492048	107492048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	BBX-94	NM_001142568	exon11	c.G1480A	p.A494T	GCCGTCGCAAAAG	.	409	6	195	0	.	0	0	0	0	0
NDUFB4	4710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	120320001	120320001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	.	NM_004547	exon2	c.A224G	p.N75S	CAATAAATGTCTA	.	179	71	60	0	.	295	128	167	0	0
NMD3	51068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	160964158	160964158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	NMD3-91	NM_015938	exon12	c.C1052T	p.S351F	AGACATCTGAAAT	.	79	33	30	0	.	1	0	1	0	0
PARL	55486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	183602604	183602604	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PARL-90	NM_018622	exon1	c.T31C	p.W11R	AGCCCCAGCCTCT	.	37	13	17	0	.	11	9	2	0	0
MUC4	4585	hgsc.bcm.edu	37	3	195505787	195505787	+	Missense_Mutation	SNP	C	C	T	rs11915935		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MUC4-90	NM_018406	exon2	c.G12664A	p.A4222T	GGGTGGCGTGACC	.	119	8	60	0	.	0	0	0	0	0
MUC4	4585	hgsc.bcm.edu	37	3	195505790	195505790	+	Missense_Mutation	SNP	G	G	C	rs11928301	byhapmap	TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MUC4-90	NM_018406	exon2	c.C12661G	p.H4221D	TGGCGTGACCTGT	.	120	9	60	0	.	0	0	0	0	0
MUC4	4585	broad.mit.edu	37	3	195515038	195515038	+	Missense_Mutation	SNP	G	G	A	rs201206859		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MUC4-90	NM_018406	exon2	c.C3413T	p.P1138L	GTGACAGGAAGAG	.	105	16	45	0	.	0	0	0	0	0
MUC4	4585	broad.mit.edu	37	3	195515052	195515052	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MUC4-90	NM_018406	exon2	c.C3399G	p.H1133Q	GGTGGCGTGACCT	.	117	17	54	1	.	0	0	0	0	0
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	195517971	195517971	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	MUC4-90	NM_018406	exon2	c.A480T	p.E160D	AGAACTTTCAGTT	.	111	45	38	0	.	0	0	0	0	0
ZNF721	170960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	436719	436719	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZNF721-47	NM_133474	exon3	c.G1537C	p.G513R	TTGTGGAACTAGT	.	126	41	31	0	.	0	0	0	0	0
UVSSA	57654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1369834	1369834	+	Silent	SNP	G	G	A	rs114098503		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	.	NM_020894	exon10	c.G1446A	p.A482A	CAGAGCGTTGCCA	.	84	33	44	0	G|0.999;A|0.001	0	0	0	0	0
TRMT10A	93587	broad.mit.edu	37	4	100478514	100478514	+	Silent	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	.	NM_001134666	exon4	c.G408A	p.L136L	AGGATGCAGTGCC	.	163	4	64	0	.	0	0	0	0	0
ALPK1	80216	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	113303701	113303701	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ALPK1-337	NM_001102406	exon4	c.A269T	p.Q90L	TGCAGCAGTTACT	.	209	81	101	1	.	0	0	0	0	0
TMEM192	201931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	166000935	166000935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	TMEM192-69	NM_001100389	exon6	c.C691A	p.L231I	CTTCTAGGCTTGA	.	76	27	36	0	.	9	8	1	0	0
PPARGC1B	133522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149213062	149213062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PPARGC1B-186	NM_133263	exon5	c.G1426A	p.V476M	TGCCCCGTGCGGC	.	82	27	52	0	.	0	0	0	0	0
GALNT10	55568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	153755929	153755929	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	GALNT10-92	NM_198321	exon5	c.C661T	p.R221X	AGGACCCGAATGC	.	159	61	88	0	.	0	0	0	0	0
CPEB4	80315	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	173317154	173317154	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	CPEB4-90	NM_030627	exon1	c.T418G	p.L140V	CCAGTGTTGACAG	.	111	8	51	0	.	0	0	0	0	0
CDHR2	54825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176018324	176018324	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	CDHR2-70	NM_017675	exon29	c.G3653A	p.R1218Q	CTGAGCGGTGAGC	.	122	44	52	0	.	1	0	1	0	0
DSP	1832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	7583589	7583589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	DSP-518	NM_004415	exon24	c.G6094A	p.V2032I	TCTTTGGTAGAGG	.	114	32	49	0	.	2	2	0	0	0
BMP6	654	broad.mit.edu	37	6	7727541	7727541	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	BMP6-578	NM_001718	exon1	c.A353T	p.Q118L	AGCAGCAGCTGCC	.	95	5	53	1	.	0	0	0	0	0
TMEM170B	100113407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	11575733	11575733	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	TMEM170B-22	NM_001100829	exon3	c.G338T	p.G113V	TATGGGGCGTTGG	.	134	36	75	0	.	0	0	0	0	0
ECT2L	345930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	139135653	139135653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ECT2L-22	NM_001195037	exon3	c.T92C	p.I31T	CTCTTATAAGTCA	.	112	45	48	0	.	0	0	0	0	0
CITED2	10370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	139694869	139694869	+	Silent	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	CITED2-90	NM_001168389	exon2	c.T228C	p.H76H	CATCGCATGCCTG	.	33	11	20	0	.	64	30	34	0	0
RADIL	55698	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	4841357	4841357	+	Silent	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	RADIL-994	NM_018059	exon12	c.C2769T	p.G923G	GGGGCCGCCGGAC	.	300	118	111	0	.	5	4	1	0	0
VWDE	221806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	12375822	12375822	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	VWDE-68	NM_001135924	exon27	c.T4599G	p.I1533M	GGGCGCAATGCAT	.	292	128	86	0	.	8	3	5	0	0
ZAN	7455	broad.mit.edu	37	7	100349675	100349675	+	Silent	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZAN-142	.	.	.	.	CACCATTTCCACA	.	525	11	103	1	.	0	0	0	0	0
ZAN	7455	broad.mit.edu	37	7	100350033	100350033	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZAN-142	.	.	.	.	ACCATCTCCCCAG	.	659	35	176	9	.	0	0	0	0	0
PRRT4	401399	hgsc.bcm.edu;broad.mit.edu	37	7	127991277	127991277	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	.	NM_001174164	exon6	c.G2333C	p.G778A	GCCTCCCCTGATC	.	56	21	14	0	.	0	0	0	0	0
KEL	3792	broad.mit.edu	37	7	142640923	142640923	+	Silent	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	KEL-93	NM_000420	exon14	c.G1539A	p.R513R	GAGGGACCGGACA	.	198	4	63	0	.	0	0	0	0	0
SPAG11B	10407	bcgsc.ca	37	8	7308688	7308688	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SPAG11B-22	NM_016512	exon3	c.C248A	p.S83X	CTAAATGAGGGTC	.	623	19	317	2	.	0	0	0	0	0
TNKS	8658	broad.mit.edu	37	8	9605598	9605598	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	TNKS-660	NM_003747	exon18	c.C2708T	p.A903V	AGTGGGCGTTTAC	.	263	7	137	0	.	0	0	0	0	0
SGK196	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	42977953	42977953	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	.	NM_032237	exon5	c.A986G	p.E329G	TTCTGGAGACCTA	.	64	23	33	0	.	0	0	0	0	0
LRRC69	100130742	broad.mit.edu	37	8	92145338	92145338	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	.	NM_001129890	exon4	c.A384T	p.R128S	TTTTAGATTAAAA	.	44	8	18	1	.	0	0	0	0	0
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	124992806	124992806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	FER1L6-100	NM_001039112	exon11	c.G1165A	p.E389K	TTTGGGGAAGGTG	.	278	93	115	0	.	0	0	0	0	0
ZBTB5	9925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	37441549	37441549	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZBTB5-92	NM_014872	exon2	c.C1000A	p.L334M	AGCTCAGGGGCTC	.	45	12	20	0	.	1	0	1	0	0
ABCA1	19	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	107578436	107578436	+	Silent	SNP	C	C	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ABCA1-1016	NM_005502	exon25	c.G3726A	p.T1242T	CAGGGTCGTCTCT	.	120	51	44	0	.	0	0	0	0	0
PTPN3	5774	broad.mit.edu	37	9	112185015	112185015	+	Silent	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PTPN3-229	NM_002829	exon13	c.T1119C	p.P373P	AATGGGAGGGGAA	.	109	28	46	10	.	0	0	0	0	0
COQ4	51117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131095205	131095205	+	Silent	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	COQ4-90	NM_016035	exon6	c.G609A	p.P203P	TGGACCGATCCGA	.	184	68	86	0	.	169	95	74	0	0
SURF2	6835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	136227264	136227264	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SURF2-226	NM_017503	exon5	c.G641T	p.R214M	AGAGCAGGAGAGA	.	52	19	30	0	.	72	8	64	0	0
NOTCH1	4851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139407915	139407915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	NOTCH1-5459	NM_017617	exon14	c.C2282A	p.P761H	ACACAAGGGTTGG	.	68	20	30	0	.	0	0	0	0	0
PNPLA4	8228	broad.mit.edu	37	X	7868821	7868821	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	PNPLA4-130	NM_004650	exon7	c.T668C	p.L223P	GGAAAAAGGGCTT	.	379	5	179	0	.	46	46	0	0	0
FAM122C	159091	broad.mit.edu	37	X	133941690	133941690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	FAM122C-130	NM_001170780	exon4	c.G170A	p.G57D	CAGACGGCAACAT	.	131	7	51	0	.	0	0	0	0	0
SLC6A8	6535	broad.mit.edu	37	X	152958793	152958793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	SLC6A8-131	NM_005629	exon6	c.T988C	p.Y330H	GGCAGCTACAACC	.	114	5	79	0	.	43	43	0	0	0
ACOT11	26027	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	55059680	55059687	+	Frame_Shift_Del	DEL	GCCACCTT	GCCACCTT	-	rs35306628	alternate_allele	TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	GCCACCTT	GCCACCTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ACOT11-90	NM_147161	exon5	c.439_446del	p.147_149del	.	.	49	13	43	0	.	0	0	0	0	0
RNPEP	6051	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	201958580	201958590	+	Frame_Shift_Del	DEL	TTCCAGATGTG	TTCCAGATGTG	-	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	TTCCAGATGTG	TTCCAGATGTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	RNPEP-91	NM_020216	exon3	c.658_668del	p.220_223del	.	.	161	36	70	0	.	0	0	0	0	0
ZMYM2	7750	broad.mit.edu	37	13	20638677	20638677	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZMYM2-685	NM_001190964	exon20	c.3124delA	p.K1042fs	CGATCTAAAAAAA	.	92	7	32	0	.	0	0	0	0	0
CHD3	1107	broad.mit.edu	37	17	7788146	7788148	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	CHD3-228	NM_001005271	exon1	c.22_24del	p.8_8del	AGGGACGAGGAGG	.	6	2	9	0	.	0	0	0	0	0
ZC3H4	23211	hgsc.bcm.edu;broad.mit.edu	37	19	47569625	47569625	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZC3H4-74	NM_015168	exon15	c.3900delC	p.P1300fs	.	.	63	15	33	0	.	0	0	0	0	0
RTN4	57142	broad.mit.edu	37	2	55277140	55277140	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	RTN4-155	NM_020532	exon1	c.297delC	p.P99fs	GGCGACGGGGGGA	.	6	2	7	0	.	0	0	0	0	0
COL18A1	80781	broad.mit.edu	37	21	46911183	46911183	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	COL18A1-90	NM_030582	exon21	c.2652delC	p.G884fs	CCCTGGCCCCCCC	.	315	8	176	0	.	0	0	0	0	0
FRYL	285527	broad.mit.edu	37	4	48604083	48604083	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	FRYL-69	NM_015030	exon13	c.989delT	p.L330X	TTATTTAAAAAAA	.	1122	8	506	0	.	0	0	0	0	0
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	73017054	73017055	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	RIMS1-144	NM_014989	exon27	c.3944_3945del	p.1315_1315del	.	.	118	34	64	0	.	0	0	0	0	0
RINT1	60561	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	105189036	105189036	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	RINT1-517	NM_021930	exon7	c.875delA	p.E292fs	.	.	197	62	53	0	.	0	0	0	0	0
OR2T29	343563	broad.mit.edu	37	1	248722428	248722429	+	Frame_Shift_Ins	INS	-	-	CG	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	.	NM_001004694	exon1	c.365_366insCG	p.M122fs	TAGGCCATGGTGG	.	889	44	454	25	.	0	0	0	0	0
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	3980188	3980189	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	ZZEF1-93	NM_015113	exon20	c.3085_3086insA	p.V1029fs	.	.	222	121	71	0	.	0	0	0	0	0
UGT1A9	54600	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	234580827	234580828	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	UGT1A9-91	NM_021027	exon1	c.247_248insT	p.L83fs	.	.	217	69	99	0	.	0	0	0	0	0
AQP3	360	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	33443353	33443354	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	AQP3-90	NM_004925	exon3	c.339_340insT	p.F113fs	.	.	148	49	108	0	.	0	0	0	0	0
VSTM2B	342865	hgsc.bcm.edu;broad.mit.edu	37	19	30018224	30018225	+	Missense_Mutation	DNP	TC	TC	AA	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	VSTM2B-68	NM_001146339	exon2	c.C190A	p.Q64K	GAGATTCAGTGGT	.	44.0	16.0	15.0	0.0	.	0	0	0	0	0
CR1L	1379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207881585	207881586	+	Missense_Mutation	DNP	GC	GC	TG	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	CR1L-46	NM_175710	exon10	c.C1392G	p.S464M	TTGGAGCATGAAG	.	267.0	72.0	147.0	0.0	.	0	0	0	0	0
KLHL18	23276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47374712	47374713	+	Missense_Mutation	DNP	GC	GC	TA	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	KLHL18-90	NM_025010	exon5	c.C667A	p.EL222DM	CCTGAGCTGCTGT	.	81.0	23.0	45.0	0.0	.	0	0	0	0	0
HOXB9	3219	broad.mit.edu	37	17	46703276	46703277	+	Missense_Mutation	DNP	TC	TC	CT	novel		TCGA-A4-A6HP-01A-11D-A31X-10	TCGA-A4-A6HP-10A-01D-A31X-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d1845e20-13c6-473e-a607-d5010b214486	1fbfe3f1-dbc6-4e89-a9f6-0adbf2672b92	.	HOXB9-90	NM_024017	exon1	c.G355A	p.E119R	GCGGCTCCGCCTT	.	32	8	12	0	.	0	0	0	0	0