Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19420561	19420561	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	UBR4-612	NM_020765	exon95	c.C13819A	p.R4607S	TGGAGCGAACAAA	.	41	11	62	1	.	36	19	17	0	0
ZYG11B	79699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	53236935	53236935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ZYG11B-94	NM_024646	exon3	c.C440A	p.T147N	CATTAACTCTCTC	.	73	24	169	0	.	0	0	0	0	0
SGIP1	84251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	67138996	67138996	+	Missense_Mutation	SNP	C	C	A	rs142151342	alternate_allele	TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SGIP1-93	NM_032291	exon12	c.C593A	p.A198D	CCCTTGCTCCTCT	.	301	95	620	0	C|1.000;G|0.000	1	1	0	0	0
CDC7	8317	hgsc.bcm.edu	37	1	91973853	91973853	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	CDC7-1125	NM_003503	exon4	c.G234C	p.Q78H	AGCACAGTTACAA	.	21	2	116	0	.	0	0	0	0	0
BCAR3	8412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94054731	94054731	+	Silent	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	BCAR3-228	NM_001261409	exon5	c.G732A	p.Q244Q	GCCACTCTGCTGG	.	94	35	61	0	.	1	0	1	0	0
ATP1A1	476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	116931576	116931576	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ATP1A1-91	NM_000701	exon7	c.A689C	p.D230A	CTCCAGATTTCAC	.	89	38	193	0	.	45	17	28	0	0
FAM72B	653820	hgsc.bcm.edu	37	1	120839913	120839913	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FAM72B-68	NM_001100910	exon1	c.C80A	p.S27Y	TCAGCTCTAGGGG	.	657	89	758	0	.	0	0	0	0	0
CELF3	11189	hgsc.bcm.edu	37	1	151678722	151678722	+	Silent	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	CELF3-91	NM_007185	exon10	c.A1104G	p.Q368Q	CTGCTGTTGCTGC	.	35	3	13	0	.	62	0	62	0	0
PGLYRP3	114771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153279661	153279661	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PGLYRP3-94	NM_052891	exon2	c.C138G	p.Y46X	GATGATGTAGGCC	.	74	23	42	0	.	0	0	0	0	0
BMS1	9790	ucsc.edu	37	10	43315737	43315737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	BMS1-93	NM_014753	exon16	c.G2634T	p.E878D	GTATGAGGGTTTT	.	197	2	254	2	.	52	33	19	0	0
NODAL	4838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	72195424	72195424	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	NODAL-289	NM_018055	exon2	c.A509T	p.E170V	TGCTTCTCCAGGG	.	122	38	74	0	.	0	0	0	0	0
NOLC1	9221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	103917239	103917239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	NOLC1-91	NM_004741	exon4	c.C368T	p.A123V	CCAAAGCATCAGA	.	75	21	95	0	.	2	2	0	0	0
BRSK2	9024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1466623	1466623	+	Silent	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	BRSK2-333	NM_001256630	exon10	c.C1050T	p.D350D	GCTGGACAGCATG	.	58	24	43	0	.	0	0	0	0	0
EIF3M	10480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	32623898	32623898	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	EIF3M-155	NM_006360	exon11	c.A1078T	p.N360Y	AAACAAAATCTGA	.	22	10	173	0	.	416	223	193	0	0
DGKZ	8525	hgsc.bcm.edu	37	11	46388524	46388524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	DGKZ-676	NM_001105540	exon2	c.G718A	p.A240T	TGGAGCGCCCTGC	.	15	10	3	1	.	0	0	0	0	0
OR5M3	219482	hgsc.bcm.edu	37	11	56237625	56237625	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	OR5M3-70	NM_001004742	exon1	c.G349C	p.A117P	CAAAGGCCATCGC	.	23	2	303	0	.	0	0	0	0	0
TMX2	51075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57480106	57480106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TMX2-90	NM_015959	exon1	c.C16A	p.P6T	TTGGCACCTCTAA	.	76	27	59	0	.	35	17	18	0	0
SNORA18	677805	ucsc.edu	37	11	93466710	93466710	+	RNA	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	.	.	.	.	.	ATGAGGCGTTTCC	.	16	4	194	0	.	17	5	12	0	0
SIK2	23235	hgsc.bcm.edu;broad.mit.edu	37	11	111590501	111590501	+	Silent	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SIK2-783	NM_015191	exon10	c.C1269T	p.V423V	TTAGGTCAATGGC	.	59	21	45	0	.	1	1	0	0	0
NXPE1	120400	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	114401163	114401163	+	Silent	SNP	C	C	T	rs151227911		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	.	NM_152315	exon3	c.G141A	p.A47A	AGCCGACGCCCCT	.	103	19	170	0	C|0.999;T|0.001	0	0	0	0	0
SMARCC2	6601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56558312	56558312	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SMARCC2-229	NM_003075	exon27	c.A3343C	p.N1115H	GCAGGTTAGGAGG	.	259	113	123	0	.	52	25	27	0	0
GLI1	2735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57861143	57861143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	GLI1-722	NM_005269	exon9	c.C940A	p.R314S	TACTCACGCCTCG	.	190	38	123	0	.	0	0	0	0	0
C12orf66	144577	hgsc.bcm.edu;broad.mit.edu	37	12	64615826	64615826	+	Silent	SNP	G	G	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	C12orf66-515	NM_152440	exon1	c.C192G	p.A64A	CTTCTCGGCCGCG	.	60	18	36	0	.	1	1	0	0	0
CEP290	80184	ucsc.edu	37	12	88482834	88482834	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	CEP290-96	NM_025114	exon31	c.T4004C	p.L1335S	TCCTTTAAAGTGC	.	73	4	103	0	.	0	0	0	0	0
PEBP1	5037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	118577333	118577333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PEBP1-779	NM_002567	exon3	c.G323A	p.G108D	ATGTGGGCTCGGG	.	249	101	193	0	.	755	252	502	0	1
STX2	2054	ucsc.edu	37	12	131280600	131280600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	STX2-90	NM_194356	exon10	c.G852T	p.L284F	AACTGACAAGCCA	.	229	64	171	41	.	4	4	0	0	0
PARP4	143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	25067776	25067776	+	Silent	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PARP4-94	NM_006437	exon8	c.A837G	p.E279E	CATGTGTTCCAGG	.	22	8	70	1	.	0	0	0	0	0
ITM2B	9445	hgsc.bcm.edu	37	13	48830433	48830433	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ITM2B-90	NM_021999	exon3	c.G367C	p.E123Q	ATCTTTGAAGAAG	.	84	29	163	1	.	1526	1522	3	1	0
RNF31	55072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24617213	24617213	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	RNF31-90	NM_017999	exon2	c.C221G	p.T74R	TGTCCACGGCTCT	.	176	55	127	0	.	2	1	1	0	0
KIAA0391	9692	hgsc.bcm.edu	37	14	35593087	35593087	+	Silent	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	KIAA0391-226	NM_014672	exon2	c.T636C	p.G212G	TAGAGGTTACAGT	.	69	4	146	0	.	18	18	0	0	0
IRF2BPL	64207	ucsc.edu	37	14	77491938	77491938	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	IRF2BPL-90	NM_024496	exon1	c.T2198C	p.V733A	CTGGGGACGGAAG	.	125	22	108	17	.	39	30	9	0	0
SERPINA1	5265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	94849213	94849213	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SERPINA1-226	NM_001127701	exon4	c.A362C	p.Q121P	AGTTCCTGGAAGC	.	122	29	101	0	.	2592	1426	1163	1	2
WDR20	91833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102675938	102675938	+	Silent	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	WDR20-90	NM_001242417	exon4	c.T1524C	p.D508D	GAAAGATCACAAG	.	239	78	204	0	.	20	11	9	0	0
PLCB2	5330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40590557	40590557	+	Missense_Mutation	SNP	G	G	A	rs201305253		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PLCB2-275	NM_004573	exon11	c.C1022T	p.S341L	TCAGCCGAGGAGA	.	125	31	100	0	G|0.999;A|0.001	7	7	0	0	0
ANKDD1A	348094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65239709	65239709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ANKDD1A-69	NM_182703	exon13	c.G1247T	p.W416L	TGCTGTGGCGGCT	.	65	22	53	0	.	0	0	0	0	0
DENND4A	10260	hgsc.bcm.edu;broad.mit.edu	37	15	65989618	65989618	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	DENND4A-229	NM_001144823	exon21	c.T2934A	p.S978R	ACAATCACTCCCT	.	38	3	183	1	.	0	0	0	0	0
NEIL1	79661	broad.mit.edu	37	15	75646183	75646183	+	Silent	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	NEIL1-659	NM_001256552	exon6	c.G1080A	p.R360R	GGACCGGCATGGC	.	482	8	294	1	.	23	23	0	0	0
FAM154B	283726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	82574679	82574679	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FAM154B-70	NM_001008226	exon3	c.A473C	p.H158P	TACCTCATCAGCT	.	51	9	370	0	.	0	0	0	0	0
IFT140	9742	broad.mit.edu	37	16	1574816	1574816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	IFT140-95	NM_014714	exon23	c.G2966A	p.R989H	TGGATGCGGACCA	.	288	6	152	0	.	11	11	0	0	0
PALB2	79728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23646407	23646407	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PALB2-1351	NM_024675	exon4	c.T1460A	p.V487D	GAGCTGACTTTAG	.	179	89	403	0	.	0	0	0	0	0
RNF40	9810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30776526	30776526	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	RNF40-226	NM_014771	exon7	c.A796T	p.T266S	AAAGTGACATCGG	.	311	86	159	2	.	4	4	0	0	0
CYB5D1	124637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7762716	7762716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	CYB5D1-91	NM_144607	exon4	c.C473T	p.S158F	TGGAGTCCATATG	.	111	24	107	0	.	4	3	1	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	1062	166	823	112	.	4	1	3	0	0
ERBB2	2064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37876080	37876080	+	Silent	SNP	A	A	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ERBB2-9959	NM_004448	exon16	c.A1939C	p.R647R	GAGCAGAGAGCCA	.	471	93	243	0	.	0	0	0	0	0
PLEKHH3	79990	broad.mit.edu	37	17	40822333	40822333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PLEKHH3-158	NM_024927	exon11	c.C1616T	p.A539V	AGCGCCGCCAGGG	.	6	3	12	0	.	4	0	4	0	0
ATXN7L3	56970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42275086	42275086	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ATXN7L3-68	NM_020218	exon2	c.G64T	p.E22X	ATATCTCCTGAGC	.	328	58	159	0	.	0	0	0	0	0
TTLL6	284076	broad.mit.edu	37	17	46865176	46865176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TTLL6-90	NM_001130918	exon11	c.C1586T	p.A529V	TACCGGGCATACT	.	476	6	230	0	.	0	0	0	0	0
SPATA20	64847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48628196	48628196	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SPATA20-90	NM_022827	exon11	c.G1301C	p.G434A	TGTTGGGTGCCAC	.	347	62	208	2	.	53	36	17	0	0
ABCA6	23460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	67108373	67108373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ABCA6-159	NM_080284	exon16	c.G2083A	p.G695S	AAGAACCTGCACA	.	63	28	548	0	.	2	2	0	0	0
TMEM104	54868	broad.mit.edu	37	17	72832672	72832672	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TMEM104-90	NM_017728	exon10	c.G1337A	p.R446H	ACTGCCGCAGGGA	.	207	5	106	0	.	2	2	0	0	0
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu	37	17	76445563	76445563	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	DNAH17-142	NM_173628	exon69	c.A11144G	p.Y3715C	TACATGTAGACGG	.	34	5	13	0	.	0	0	0	0	0
TAF4B	6875	broad.mit.edu	37	18	23969874	23969874	+	Silent	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TAF4B-71	NM_005640	exon15	c.T2487C	p.R829R	GCATCGTCCAAGA	.	108	3	272	0	.	1	1	0	0	0
ZNF271	10778	ucsc.edu	37	18	32886653	32886653	+	RNA	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ZNF271-90	.	.	.	.	TACTGGGGAGAAA	.	29	1	135	0	.	5	5	0	0	0
ACSBG2	81616	hgsc.bcm.edu;broad.mit.edu	37	19	6177251	6177251	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ACSBG2-23	NM_030924	exon8	c.T750G	p.I250M	GTGGATTGCAGGA	.	72	5	76	0	.	0	0	0	0	0
PRKCSH	5589	hgsc.bcm.edu	37	19	11558373	11558373	+	Silent	SNP	A	A	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PRKCSH-90	NM_001001329	exon11	c.A969G	p.E323E	GGAGGAAGAAGAG	.	52	5	43	0	.	9	9	0	0	0
MAU2	23383	broad.mit.edu	37	19	19454740	19454740	+	Silent	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	MAU2-91	NM_015329	exon10	c.G1068A	p.A356A	CACGGCGCTGCAG	.	247	5	134	0	.	0	0	0	0	0
ZNF14	7561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19823080	19823080	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ZNF14-517	NM_021030	exon4	c.G1010T	p.C337F	TCTTTACATTTAT	.	39	13	202	1	.	0	0	0	0	0
ATP4A	495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36050918	36050918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ATP4A-91	NM_000704	exon7	c.C845A	p.A282E	AGCGATGCGATGC	.	257	72	167	0	.	0	0	0	0	0
CAPN13	92291	hgsc.bcm.edu	37	2	30955349	30955349	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	CAPN13-136	NM_144575	exon20	c.T1882A	p.F628I	TGGGGAAGCTGAC	.	52	13	33	0	.	0	0	0	0	0
EIF5B	9669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	99995867	99995867	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	EIF5B-93	NM_015904	exon12	c.T2037G	p.N679K	TATTAATGAACAG	.	10	4	90	0	.	39	23	16	0	0
COL5A2	1290	hgsc.bcm.edu	37	2	189912941	189912941	+	Silent	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	COL5A2-92	NM_000393	exon45	c.A3195G	p.G1065G	ACGTTCTCCAACA	.	50	3	191	0	.	0	0	0	0	0
TRAK2	66008	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	202262967	202262967	+	Silent	SNP	G	G	A	rs201579398		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TRAK2-90	NM_015049	exon6	c.C591T	p.F197F	CTCATTGAACCGA	.	17	9	230	0	G|0.999;A|0.001	0	0	0	0	0
FN1	2335	hgsc.bcm.edu	37	2	216232668	216232668	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FN1-584	NM_212482	exon42	c.G6936C	p.W2312C	TCGTTCCCACTCA	.	38	2	186	0	.	122	122	0	0	0
RUFY4	285180	hgsc.bcm.edu;broad.mit.edu	37	2	218954705	218954705	+	Silent	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	RUFY4-46	NM_198483	exon13	c.C1644T	p.C548C	TGCTTGCTCCATG	.	11	6	10	1	.	0	0	0	0	0
SP140	11262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	231177371	231177371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SP140-90	NM_007237	exon27	c.C2576T	p.A859V	TGTTTGCTATTCA	.	152	46	232	0	.	18	18	0	0	0
SOX12	6666	hgsc.bcm.edu	37	20	307296	307296	+	Missense_Mutation	SNP	A	A	G	rs73574574		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SOX12-514	NM_006943	exon1	c.A728G	p.E243G	AAGAGGAGACGGT	.	10	5	2	1	A|0.995;G|0.005	7	5	2	0	0
UBOX5	22888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3090943	3090943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	UBOX5-227	NM_001267584	exon5	c.C1430T	p.P477L	GGCCCAGGATGCT	.	253	97	165	0	.	3	2	1	0	0
ZSWIM1	90204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44512145	44512145	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ZSWIM1-91	NM_080603	exon2	c.A914T	p.N305I	AGAACAATCATGC	.	330	103	207	0	.	23	17	6	0	0
GRAMD4	23151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	47068788	47068788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	GRAMD4-23	NM_015124	exon13	c.G1133A	p.R378H	TTAAACGCTGCCC	.	117	42	77	0	.	11	6	5	0	0
C3orf35	339883	broad.mit.edu	37	3	37458846	37458846	+	Missense_Mutation	SNP	G	G	A	rs193097162		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	C3orf35-112	NM_178342	exon5	c.G89A	p.R30Q	GCGCCCGAACTTT	.	128	4	258	0	G|0.999;A|0.001	1	1	0	0	0
CCRL2	9034	broad.mit.edu	37	3	46449903	46449903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	CCRL2-569	NM_001130910	exon2	c.C369A	p.F123L	GTACTTCGTGGGC	.	204	4	240	0	.	1	1	0	0	0
OR5H15	403274	hgsc.bcm.edu	37	3	97887854	97887854	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	OR5H15-92	NM_001005515	exon1	c.T311C	p.I104T	TTTCCATTGCAAT	.	47	3	406	0	.	0	0	0	0	0
IFT57	55081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	107937434	107937434	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	IFT57-227	NM_018010	exon3	c.C442G	p.L148V	AATCAAGAACATA	.	47	7	200	0	.	52	27	25	0	0
PVRL3	25945	hgsc.bcm.edu	37	3	110852638	110852638	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PVRL3-92	NM_015480	exon6	c.T1226G	p.V409G	CTAGTGTAGTGGG	.	38	3	354	1	.	10	10	0	0	0
STXBP5L	9515	broad.mit.edu	37	3	120952528	120952528	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	STXBP5L-77	NM_014980	exon12	c.C1177A	p.Q393K	CTGACACAAAGCA	.	20	3	149	0	.	0	0	0	0	0
RARRES1	5918	hgsc.bcm.edu;broad.mit.edu	37	3	158422600	158422600	+	Missense_Mutation	SNP	G	G	C	rs140091959	byfrequency;alternate_allele	TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	RARRES1-514	NM_206963	exon4	c.C652G	p.L218V	TAGTGAGCTGTGC	.	44	11	94	0	G|0.999;A|0.001	44	44	0	0	0
GAK	2580	broad.mit.edu	37	4	858925	858925	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	GAK-568	NM_005255	exon23	c.A3151C	p.T1051P	CTGGCGTGGGGGC	.	68	20	36	11	.	62	58	4	0	0
EVC	2121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	5721079	5721079	+	Silent	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	EVC-92	NM_153717	exon2	c.G279A	p.S93S	GATGTCGAAGGAC	.	431	178	266	0	.	0	0	0	0	0
BOD1L1	259282	broad.mit.edu	37	4	13601241	13601241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	.	NM_148894	exon10	c.C7283T	p.A2428V	TTTTCCGCACAAA	.	502	6	364	1	.	0	0	0	0	0
PDS5A	23244	hgsc.bcm.edu	37	4	39929607	39929607	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	.	NM_001100399	exon3	c.C316G	p.P106A	TATATGGAGCTTC	.	27	2	89	0	.	3	3	0	0	0
LNX1	84708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	54343092	54343092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	LNX1-229	NM_001126328	exon9	c.G1720A	p.A574T	CCACTGCCTCACT	.	274	46	308	0	.	8	5	3	0	0
UGT2A3	79799	hgsc.bcm.edu	37	4	69816984	69816984	+	Silent	SNP	A	A	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	UGT2A3-92	NM_024743	exon1	c.T495C	p.P165P	CACAAAAGGGACT	.	22	2	131	0	.	20	20	0	0	0
AGPAT9	84803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	84457815	84457815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	AGPAT9-91	NM_001256421	exon2	c.T40C	p.W14R	TCCACCTGGCTGA	.	214	44	80	0	.	3	3	0	0	0
ANKRD50	57182	hgsc.bcm.edu	37	4	125591236	125591236	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ANKRD50-90	NM_020337	exon4	c.G3196C	p.E1066Q	CATGCTCTAATAA	.	27	2	170	0	.	0	0	0	0	0
SEMA5A	9037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	9119220	9119220	+	Silent	SNP	A	A	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SEMA5A-91	NM_003966	exon15	c.T1815A	p.S605S	GCAGGGAGACCAC	.	79	20	38	0	.	0	0	0	0	0
CDH6	1004	hgsc.bcm.edu	37	5	31294177	31294177	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	CDH6-159	NM_004932	exon3	c.A337C	p.T113P	CAGGCCACCAAGA	.	29	2	276	2	.	3	3	0	0	0
RAI14	26064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	34757668	34757668	+	Silent	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	RAI14-91	NM_001145525	exon5	c.C141T	p.A47A	GGGGGCCAGTGCC	.	155	28	137	0	.	1	1	0	0	0
PARP8	79668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	50123848	50123848	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PARP8-586	NM_001178055	exon21	c.T2048A	p.F683Y	CCAATTTTAGAGC	.	125	41	217	0	.	33	20	13	0	0
GPR98	84059	hgsc.bcm.edu	37	5	89923119	89923119	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	GPR98-103	NM_032119	exon7	c.T764C	p.I255T	AGATCATCATTAA	.	52	3	172	1	.	0	0	0	0	0
NR2F1	7025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	92929424	92929424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	NR2F1-227	NM_005654	exon3	c.C1148A	p.S383Y	CCTCCTCCGTCAT	.	414	121	292	0	.	34	34	0	0	0
POU5F2	134187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	93076682	93076682	+	Silent	SNP	A	A	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	.	NM_153216	exon1	c.T588A	p.L196L	GCCCAGAAGGTTC	.	208	66	166	0	.	0	0	0	0	0
FNIP1	96459	broad.mit.edu	37	5	131006178	131006178	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FNIP1-92	NM_133372	exon15	c.C3086T	p.S1029L	AAATCTGACATCA	.	25	6	214	0	.	3	2	1	0	0
FNIP1	96459	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	131042155	131042155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FNIP1-92	NM_133372	exon9	c.G863T	p.R288L	CGCCAACGTCGCT	.	68	15	201	0	.	0	0	0	0	0
HIVEP1	3096	broad.mit.edu	37	6	12123740	12123740	+	Silent	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	HIVEP1-139	NM_002114	exon4	c.T3712C	p.L1238L	GAGATTTTGGTCA	.	67	4	117	0	.	0	0	0	0	0
HLA-DQA2	3118	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	32713781	32713781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	HLA-DQA2-90	NM_020056	exon3	c.C545T	p.S182F	TCCCTTCTGCTGA	.	286	92	417	1	.	437	437	0	0	0
LEMD2	221496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33748926	33748926	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	LEMD2-90	NM_181336	exon4	c.T858G	p.N286K	CTCAAAATTACCT	.	152	49	115	0	.	2	0	2	0	0
TTBK1	84630	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	43251695	43251695	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TTBK1-353	NM_032538	exon14	c.C3217A	p.L1073M	GGCTCACTGTCGG	.	121	46	85	0	.	0	0	0	0	0
HTR1B	3351	broad.mit.edu	37	6	78172192	78172192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	HTR1B-90	NM_000863	exon1	c.G929A	p.R310H	GCTTTGCGCTCCC	.	679	7	506	0	.	1	1	0	0	0
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	117746764	117746764	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ROS1-1353	NM_002944	exon1	c.G56C	p.C19S	CATAGGCAGCCAA	.	135	41	287	0	.	0	0	0	0	0
TMEM184A	202915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	1590513	1590513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TMEM184A-90	NM_001097620	exon3	c.C325T	p.L109F	GGAGGAGGAGGCT	.	200	47	120	0	.	0	0	0	0	0
TWISTNB	221830	hgsc.bcm.edu	37	7	19738026	19738026	+	Silent	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TWISTNB-91	NM_001002926	exon4	c.A930G	p.K310K	TTTCTTTTTTTTC	.	73	5	451	0	.	12	12	0	0	0
UPK3B	80761	hgsc.bcm.edu	37	7	76141063	76141063	+	Missense_Mutation	SNP	C	C	G	rs71552451		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	UPK3B-90	NM_030570	exon2	c.C490G	p.L164V	CTGCCCCTGTCTC	.	25	2	19	1	C|0.500;G|0.500	3	0	3	0	0
PCLO	27445	hgsc.bcm.edu;broad.mit.edu	37	7	82763635	82763635	+	Silent	SNP	A	A	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PCLO-29	NM_014510	exon3	c.T3231C	p.N1077N	GCAAGTATTGAAG	.	51	12	40	0	.	0	0	0	0	0
TFR2	7036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100228607	100228607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TFR2-92	NM_003227	exon9	c.G1175A	p.G392D	CCGGGGCCCAGGT	.	83	23	34	0	.	1	0	1	0	0
CHRM2	1129	hgsc.bcm.edu	37	7	136699700	136699700	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	CHRM2-94	NM_001006632	exon3	c.G88C	p.A30P	CTGGTGGCTGGAT	.	32	2	181	0	.	0	0	0	0	0
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	151882674	151882674	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	MLL3-1398	NM_170606	exon34	c.A5051C	p.K1684T	CTTGCTTTTCTCC	.	131	13	206	0	.	0	0	0	0	0
AGPAT5	55326	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	6614714	6614714	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	AGPAT5-90	NM_018361	exon8	c.T900A	p.D300E	ACCAGATCCAGAA	.	15	8	91	0	.	5	2	3	0	0
TNKS	8658	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	9413684	9413684	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TNKS-660	NM_003747	exon1	c.C235G	p.R79G	AGGCCCCGATCCC	.	103	27	75	0	.	0	0	0	0	0
KIAA1967	57805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	22464154	22464154	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	KIAA1967-92	NM_021174	exon4	c.T185A	p.V62D	GTATTGTTACCAG	.	159	51	109	0	.	7	6	1	0	0
ZNF703	80139	hgsc.bcm.edu	37	8	37555597	37555597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ZNF703-523	NM_025069	exon2	c.G1178A	p.G393D	TCGGCGGCTCCAG	.	14	5	7	2	.	2	2	0	0	0
WWP1	11059	hgsc.bcm.edu	37	8	87460473	87460473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	WWP1-659	NM_007013	exon19	c.A2095G	p.I699V	GAATCTATTGATA	.	30	2	137	0	.	14	14	0	0	0
MTDH	92140	hgsc.bcm.edu	37	8	98657042	98657042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	MTDH-91	NM_178812	exon1	c.T308C	p.L103P	ACGACCTGGCCTT	.	34	3	34	0	.	2	2	0	0	0
KCNS2	3788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	99441267	99441267	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	KCNS2-91	NM_020697	exon2	c.G1060T	p.E354X	AAGGAGGAGAACG	.	202	51	148	0	.	0	0	0	0	0
FAM135B	51059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	139164000	139164000	+	Silent	SNP	G	G	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FAM135B-31	NM_015912	exon13	c.C2718A	p.G906G	AGGCATGCCCTTT	.	335	98	307	0	.	0	0	0	0	0
FAM135B	51059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	139164004	139164004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FAM135B-31	NM_015912	exon13	c.A2714G	p.K905R	ATGCCCTTTGGGG	.	338	94	310	0	.	0	0	0	0	0
UNC13B	10497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35375163	35375163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	UNC13B-157	NM_006377	exon13	c.A1333G	p.M445V	TCTGCAATGGCTA	.	369	223	447	1	.	0	0	0	0	0
MIR3134	100422990	bcgsc.ca	37	9	115013206	115013206	+	RNA	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	.	.	.	.	.	ACTACTCACCAAA	.	26	16	282	1	.	0	0	0	0	0
ABL1	25	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	133748371	133748371	+	Silent	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ABL1-3810	NM_007313	exon6	c.C1089T	p.A363A	CATGGCCACTCAG	.	143	90	137	0	.	1	1	0	0	0
TBX22	50945	hgsc.bcm.edu	37	X	79286336	79286336	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TBX22-628	NM_016954	exon8	c.G1289C	p.S430T	ACTCCAGTGATCA	.	15	2	192	0	.	0	0	0	0	0
SLC6A8	6535	hgsc.bcm.edu	37	X	152956939	152956939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SLC6A8-131	NM_005629	exon3	c.A575G	p.N192S	GTGCCAATGCCAG	.	335	18	216	1	.	43	43	0	0	0
IRF2BP2	359948	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	234743056	234743058	+	In_Frame_Del	DEL	AGC	AGC	-	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	AGC	AGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	IRF2BP2-90	NM_182972	exon2	c.1589_1591del	p.530_531del	.	.	313	74	217	0	.	0	0	0	0	0
MYO1H	283446	hgsc.bcm.edu;broad.mit.edu	37	12	109834319	109834319	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	.	NM_001101421	exon3	c.373delA	p.T125fs	.	.	135	21	100	0	.	0	0	0	0	0
FAM179B	23116	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	45433529	45433529	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FAM179B-93	NM_015091	exon1	c.1905delC	p.H635fs	.	.	59	19	114	0	.	0	0	0	0	0
ISLR2	57611	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	74425252	74425252	+	Nonsense_Mutation	DEL	G	G	-	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ISLR2-90	NM_001130138	exon4	c.157delG	p.V53X	.	.	234	76	171	0	.	0	0	0	0	0
LINS	55180	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	101114034	101114034	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	LINS-92	NM_001040616	exon5	c.1044delG	p.G348fs	.	.	213	57	281	0	.	0	0	0	0	0
PCDHGA12	26025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140811171	140811177	+	Frame_Shift_Del	DEL	GGTATGT	GGTATGT	-	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	GGTATGT	GGTATGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PCDHGA12-27	NM_032094	exon1	c.845_851del	p.282_284del	.	.	254	63	177	0	.	0	0	0	0	0
TNC	3371	broad.mit.edu;bcgsc.ca	37	9	117792668	117792668	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TNC-517	NM_002160	exon24	c.5937delC	p.P1979fs	GGGGAAGGGGTAC	.	29	14	112	0	.	0	0	0	0	0
ZCCHC8	55596	hgsc.bcm.edu;broad.mit.edu	37	12	122964832	122964833	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ZCCHC8-90	NM_017612	exon11	c.1045_1046insT	p.G349fs	.	.	59	26	44	0	.	0	0	0	0	0
ITM2B	9445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	48830432	48830433	+	In_Frame_Ins	INS	-	-	CAA	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ITM2B-90	NM_021999	exon3	c.366_367insCAA	p.F122delinsFQ	.	.	82	26	161	0	.	0	0	0	0	0
LCLAT1	253558	bcgsc.ca	37	2	30756180	30756181	+	In_Frame_Ins	INS	-	-	GTAGGTTATTCACACATT	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	LCLAT1-92	NM_182551	exon4	c.478_479insGTAGGTTATTCACACATT	p.G160delinsGRLFTHC	GGATTTGGTAGGT	.	223	10	434	0	.	0	0	0	0	0
BCHE	590	bcgsc.ca	37	3	165504036	165504037	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	BCHE-94	NM_000055	exon3	c.1581_1582insC	p.K527fs	TAGATATTTTTGT	.	21	3	157	0	.	0	0	0	0	0
SH3BP2	6452	hgsc.bcm.edu;bcgsc.ca	37	4	2831767	2831768	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SH3BP2-514	NM_001145856	exon8	c.1305_1306insC	p.V435fs	.	.	187	30	94	0	.	0	0	0	0	0
OAF	220323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	120097580	120097581	+	Missense_Mutation	DNP	AC	AC	CA	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	OAF		exon3	c.C423A	p.H141P	TCTGCACATGGAT	.	183.0	57.0	139.0	0.0	.	0	0	0	0	0
FAU	2197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64889268	64889269	+	Missense_Mutation	DNP	GC	GC	TG	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FAU		exon2	c.G17C	p.R6P	TGGGCGCGGACAA	.	153.0	37.0	112.0	1.0	.	0	0	0	0	0
KCTD8	386617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	44449784	44449785	+	Missense_Mutation	DNP	TG	TG	GA	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	KCTD8		exon1	c.C756T	p.N253H	CTCGTTGAGCGTG	.	126.0	51.0	59.0	0.0	.	0	0	0	0	0