Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CLCN6	1185	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	11888206	11888206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	CLCN6-90	NM_001286	exon11	c.G884A	p.R295H	TCTTCCGTTCTGG	.	990	54	636	0	.	3	3	0	0	0
PRAMEF19	645414	hgsc.bcm.edu	37	1	13474718	13474718	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	.	NM_001099790	exon3	c.A1411C	p.N471H	AAAAATTGAACTC	.	304	105	175	0	.	0	0	0	0	0
FGR	2268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27943508	27943508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	FGR-547	NM_001042729	exon7	c.C542T	p.S181F	GACAGGGAGTAGG	.	225	128	183	0	.	0	0	0	0	0
PABPC4	8761	hgsc.bcm.edu;bcgsc.ca	37	1	40038244	40038244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PABPC4-68	NM_001135653	exon2	c.G208T	p.D70Y	TGGTGTCCAAAGC	.	118	35	177	0	.	60	60	0	0	0
PBX1	5087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	164761796	164761796	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PBX1-659	NM_001204963	exon3	c.A331T	p.M111L	GACAACATGCTGT	.	131	43	84	1	.	4	1	3	0	0
CACNA1S	779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201039482	201039482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	CACNA1S-94	NM_000069	exon17	c.C2278T	p.P760S	CCAGGGGACGTGG	.	385	121	250	0	.	0	0	0	0	0
FMOD	2331	broad.mit.edu	37	1	203311609	203311609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	FMOD-137	NM_002023	exon3	c.C993A	p.S331R	GAAGCTGCTGATG	.	102	12	57	1	.	0	0	0	0	0
EGLN1	54583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	231502192	231502192	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	EGLN1-226	NM_022051	exon5	c.A1246T	p.K416X	AAGGTTTATTGAG	.	68	20	143	2	.	65	26	39	0	0
ZNF692	55657	broad.mit.edu	37	1	249150136	249150136	+	Silent	SNP	A	A	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ZNF692-90	NM_001136036	exon7	c.T684C	p.P228P	GGCATCAGGCTCA	.	118	3	55	0	.	4	4	0	0	0
ABI1	10006	hgsc.bcm.edu	37	10	27040641	27040641	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ABI1-1082	NM_005470	exon11	c.C1237G	p.P413A	GTGGGGGAGGTGG	.	34	2	124	0	.	31	31	0	0	0
PGAM1	5223	hgsc.bcm.edu	37	10	99192203	99192203	+	Silent	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PGAM1-226	NM_002629	exon4	c.C687T	p.P229P	CAAGCCCATGCAG	.	445	131	294	1	.	488	268	220	0	0
FAM45A	404636	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	120879873	120879873	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	FAM45A-91	NM_207009	exon5	c.A502T	p.M168L	TTTGGAATGGAAA	.	137	42	121	0	.	16	11	5	0	0
FANK1	92565	broad.mit.edu	37	10	127585218	127585218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	FANK1-91	NM_145235	exon1	c.C7A	p.P3T	ATGGAGCCCCAGA	.	29	3	25	0	.	0	0	0	0	0
MICAL2	9645	ucsc.edu	37	11	12225946	12225946	+	Silent	SNP	G	G	A	rs3763823	byfrequency;alternate_allele	TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MICAL2-92	NM_014632	exon4	c.T414A	p.R138R	CCTTCGTGGCCTG	.	234	104	198	0	G|0.668;T|0.332	1	1	0	0	0
TRIM48	79097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55032729	55032729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	TRIM48-130	NM_024114	exon2	c.G398T	p.S133I	GCTCCAGCTCTCA	.	16	8	54	0	.	0	0	0	0	0
COX8A	1351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	63743765	63743765	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	COX8A-226	NM_004074	exon2	c.C183G	p.H61Q	GTCACACCTGGAG	.	522	139	314	0	.	745	427	318	0	0
SCYL1	57410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	65305494	65305494	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SCYL1-333	NM_020680	exon16	c.G2088A	p.W696X	CAGCTGGGAAGCT	.	45	18	35	0	.	73	62	11	0	0
FGF3	2248	hgsc.bcm.edu;bcgsc.ca	37	11	69625465	69625465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	FGF3-847	NM_005247	exon3	c.C328A	p.H110N	TGTAGTGCTCCTG	.	168	53	128	1	.	1	1	0	0	0
IGSF9B	22997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	133805658	133805658	+	Splice_Site	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	IGSF9B-68	NM_014987	exon8	c.822-1G>A	.	AGGTCGCTGCAAA	.	60	32	63	0	.	7	0	7	0	0
CACNA1C	775	broad.mit.edu	37	12	2794927	2794927	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	CACNA1C-34	NM_199460	exon47	c.C5848T	p.R1950W	GAAAATCGGCAAC	.	177	12	107	0	.	2	2	0	0	0
MFSD5	84975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53647275	53647275	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MFSD5-93	NM_001170790	exon2	c.T977G	p.L326R	TGGCCCTTCGAAA	.	347	124	195	1	.	34	15	19	0	0
SMARCC2	6601	broad.mit.edu;bcgsc.ca	37	12	56559482	56559482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SMARCC2-229	NM_139067	exon27	c.T2852C	p.L951P	TACTCCAGCTGCC	.	111	29	78	2	.	6	2	4	0	0
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	81661720	81661720	+	Silent	SNP	A	A	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PPFIA2-231	NM_001220473	exon28	c.T3457C	p.L1153L	GTAATAATAAAGC	.	32	8	33	0	.	2	2	0	0	0
ATXN2	6311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	111963052	111963052	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ATXN2-136	NM_002973	exon6	c.T1120C	p.W374R	CATCCCAGGGCTC	.	116	42	218	1	.	18	12	6	0	0
ZNF10	7556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	133732280	133732280	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ZNF10-154	NM_015394	exon5	c.G448C	p.V150L	AGGCAAGTGGCAT	.	43	10	148	0	.	12	8	4	0	0
IL17D	53342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	21295994	21295994	+	Silent	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	IL17D-90	NM_138284	exon3	c.C510T	p.V170V	CTGCGTCCCCGAG	.	209	72	104	0	.	0	0	0	0	0
UPF3A	65110	hgsc.bcm.edu	37	13	115047559	115047559	+	Silent	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	UPF3A-91	NM_080687	exon2	c.C271T	p.L91L	CGCCCGCTGCCAG	.	26	4	21	0	.	23	23	0	0	0
TCL1B	9623	ucsc.edu	37	14	96157639	96157639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	TCL1B-91	NM_004918	exon3	c.A368G	p.Q123R	CATATCAGCCGGA	.	51	4	38	0	.	0	0	0	0	0
AP4E1	23431	hgsc.bcm.edu;broad.mit.edu	37	15	51285604	51285604	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	AP4E1-90	NM_007347	exon17	c.T2128G	p.W710G	AAATTGTGGGGGA	.	25	3	106	0	.	6	3	3	0	0
IGF1R	3480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	99465632	99465632	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	IGF1R-1490	NM_000875	exon11	c.C2457A	p.N819K	CTCCAACTTCGTC	.	350	122	209	0	.	18	8	10	0	0
MKL2	57496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	14346228	14346228	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MKL2-95	NM_014048	exon15	c.T2422G	p.S808A	CCTAGTTCACCCC	.	246	70	208	0	.	2	2	0	0	0
BFAR	51283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	14755800	14755800	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	BFAR-92	NM_016561	exon6	c.C835G	p.P279A	AGCTCCCCCAGGC	.	478	175	325	0	.	36	22	14	0	0
SMG1	23049	broad.mit.edu;ucsc.edu	37	16	18851234	18851234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SMG1-1160	NM_015092	exon42	c.G6731A	p.G2244E	ACAATTCCAGGAT	.	14	3	28	0	.	14	8	6	0	0
GPRC5B	51704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	19884048	19884048	+	Silent	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	GPRC5B-523	NM_016235	exon2	c.C120T	p.D40D	GAGGAGGTCCAGC	.	207	82	115	0	.	7	1	6	0	0
BCL7C	9274	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	16	30899187	30899187	+	Silent	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	BCL7C-227	NM_004765	exon6	c.G653A	p.X218X	GCTTCTCAGGGGT	.	677	259	404	0	.	54	27	27	0	0
ZNF423	23090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	49671278	49671278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ZNF423-228	NM_015069	exon4	c.C1785A	p.H595Q	CTTGCTGTGGGCC	.	318	99	150	0	.	6	0	6	0	0
BBS2	583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	56531663	56531663	+	Silent	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	BBS2-91	NM_031885	exon14	c.C1789T	p.L597L	TAACTAGCACCTT	.	75	31	282	0	.	4	0	4	0	0
ZC3H18	124245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	88653023	88653023	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ZC3H18-69	NM_144604	exon3	c.G619T	p.E207X	CTGGAAGAAGGTG	.	166	40	93	0	.	14	12	2	0	0
MINK1	50488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4800540	4800540	+	Silent	SNP	T	T	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MINK1-943	NM_153827	exon32	c.T3957G	p.V1319V	CCAAGTTTACTTC	.	96	26	72	0	.	142	65	77	0	0
YBX2	51087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7193332	7193332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	YBX2-90	NM_015982	exon6	c.G803T	p.G268V	TCATCTCCCTGCT	.	274	112	151	0	.	0	0	0	0	0
SPEM1	374768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7324267	7324267	+	Silent	SNP	C	C	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SPEM1-90	NM_199339	exon3	c.C273A	p.V91V	TGCAGTCCATCTT	.	335	133	176	0	.	0	0	0	0	0
GUCY2D	3000	hgsc.bcm.edu;broad.mit.edu	37	17	7919305	7919305	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	GUCY2D-319	NM_000180	exon17	c.A3104C	p.Y1035S	CGGGCTACCAGGT	.	37	12	32	1	.	0	0	0	0	0
NCOR1	9611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	15964734	15964734	+	Silent	SNP	A	A	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	NCOR1-229	NM_006311	exon37	c.T5862C	p.S1954S	GTCTGAACTTTGA	.	325	87	367	0	.	28	15	13	0	0
MAPK7	5598	hgsc.bcm.edu	37	17	19285267	19285267	+	Missense_Mutation	SNP	C	C	T	rs144954037		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MAPK7-1402	NM_002749	exon5	c.C1651T	p.P551S	GGGGGCCCCTCCA	.	9	7	3	2	C|0.990;T|0.010	24	10	14	0	0
PLEKHH3	79990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40821477	40821477	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PLEKHH3-158	NM_024927	exon12	c.G2176T	p.E726X	GGCTCTCTCCCAC	.	114	48	68	0	.	49	25	24	0	0
UBTF	7343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	42289718	42289718	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	UBTF-90	NM_014233	exon8	c.G765C	p.E255D	CTCGTACTCCTTC	.	290	103	192	2	.	0	0	0	0	0
MEX3D	399664	hgsc.bcm.edu	37	19	1555892	1555892	+	Silent	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MEX3D-658	NM_203304	exon2	c.C1626T	p.S542S	TCGCCAGGACAGC	.	2	2	0	0	.	0	0	0	0	0
GNA11	2767	hgsc.bcm.edu	37	19	3110145	3110145	+	Splice_Site	SNP	A	A	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	GNA11-1957	NM_002067	exon2	c.137-2A>C	.	TCCCCCAGGCACG	.	39	5	18	2	.	0	0	0	0	0
TIMM44	10469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8002997	8002997	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	TIMM44-91	NM_006351	exon3	c.A227T	p.E76V	TTCATTTCTTTGT	.	485	164	319	0	.	32	16	16	0	0
OR7E24	26648	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9362275	9362275	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	OR7E24-47	NM_001079935	exon1	c.T556G	p.C186G	CTCACCTGCTTCA	.	47	12	107	0	.	0	0	0	0	0
RDH8	50700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10132218	10132218	+	Silent	SNP	C	C	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	RDH8-94	NM_015725	exon6	c.C789A	p.V263V	CATTGTCAACGTC	.	201	67	105	1	.	0	0	0	0	0
C19orf44	84167	ucsc.edu	37	19	16612294	16612294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	C19orf44-90	NM_032207	exon2	c.G691A	p.E231K	TCTAGAGAAAAAA	.	266	1	148	0	.	8	7	1	0	0
UPF1	5976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18963808	18963808	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	UPF1-91	NM_002911	exon7	c.A985G	p.I329V	GATAACATCACTG	.	287	92	231	0	.	25	17	8	0	0
SARS2	54938	broad.mit.edu	37	19	39412717	39412717	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SARS2-93	NM_001145901	exon4	c.T395A	p.V132E	AGCCGCACCTGAA	.	44	17	15	0	.	14	11	3	0	0
HSD17B14	51171	hgsc.bcm.edu;broad.mit.edu	37	19	49316535	49316535	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	HSD17B14-90	NM_016246	exon9	c.T710G	p.F237C	GTGCAGAAGTTGG	.	46	22	18	0	.	14	8	6	0	0
MYCN	4613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	16086058	16086058	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MYCN-1271	NM_005378	exon3	c.G1234C	p.V412L	GAGTTGGTAAAGA	.	496	163	304	0	.	0	0	0	0	0
EMILIN1	11117	hgsc.bcm.edu	37	2	27305348	27305348	+	Silent	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	EMILIN1-91	NM_007046	exon4	c.C909T	p.S303S	CTGCTCCGTGTGC	.	14	7	3	0	.	8	4	4	0	0
ANXA4	307	ucsc.edu	37	2	70037724	70037724	+	Splice_Site	SNP	A	A	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ANXA4-90	NM_001153	exon7	c.398-2A>G	.	CTTGCTAGAATAT	.	96	1	73	0	.	8	8	0	0	0
RGPD8	727851	broad.mit.edu	37	2	113127775	113127775	+	Missense_Mutation	SNP	G	G	C	rs15849		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	.	NM_001164463	exon23	c.C5278G	p.P1760A	GGGAAGGATTTTC	.	48	3	65	1	C|1.000;|0.000	24	2	22	0	0
BAZ2B	29994	hgsc.bcm.edu	37	2	160287392	160287392	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	BAZ2B-94	NM_013450	exon10	c.A2176C	p.T726P	TTGAAGTAAGTGT	.	39	2	161	1	.	3	3	0	0	0
C2orf80	389073	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	209045533	209045533	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	C2orf80-69	NM_001099334	exon6	c.T302G	p.I101S	ATCGGGATACTGT	.	86	26	133	0	.	0	0	0	0	0
SP140	11262	hgsc.bcm.edu	37	2	231176275	231176275	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SP140-90	NM_007237	exon26	c.C2470G	p.R824G	GACATGCGCCTCA	.	321	22	422	0	.	26	24	2	0	0
SP140L	93349	hgsc.bcm.edu	37	2	231266487	231266487	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SP140L-23	NM_138402	exon18	c.C1609G	p.R537G	GACATGCGCCTCA	.	278	61	378	0	.	26	24	2	0	0
CHGB	1114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	5903027	5903027	+	Silent	SNP	A	A	G	rs199738388		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	CHGB-96	NM_001819	exon4	c.A237G	p.T79T	AAACACAAAGTTT	.	132	54	134	1	A|0.999;G|0.000	1	1	0	0	0
NKX2-4	644524	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	21376576	21376576	+	Silent	SNP	G	G	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	NKX2-4-22	NM_033176	exon2	c.C1038A	p.A346A	CAGGTTGGCGCCC	.	105	30	63	0	.	0	0	0	0	0
ACTR5	79913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	37400319	37400319	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ACTR5-90	NM_024855	exon9	c.G1684C	p.G562R	AAGGGAGGAGAGT	.	187	75	123	0	.	5	2	3	0	0
YTHDF1	54915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61833792	61833792	+	Silent	SNP	T	T	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	YTHDF1-92	NM_017798	exon4	c.A1500G	p.K500K	GACCGGTTTGTTG	.	275	48	134	1	.	53	44	9	0	0
PRDM15	63977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43221789	43221789	+	Missense_Mutation	SNP	C	C	G	rs139717863	alternate_allele	TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PRDM15-90	NM_022115	exon31	c.G4135C	p.A1379P	GAGTCGCGGCCGC	.	143	54	65	1	C|1.000;T|0.000	2	1	1	0	0
COL18A1	80781	hgsc.bcm.edu	37	21	46925137	46925137	+	Silent	SNP	T	T	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	COL18A1-90	NM_030582	exon35	c.T3489C	p.P1163P	GGGCCCTCCCGGC	.	20	2	12	0	.	50	50	0	0	0
CECR2	27443	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	18028580	18028580	+	Silent	SNP	T	T	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	CECR2-70	.	.	.	.	AACTCCTTACTAT	.	154	53	100	0	.	7	5	2	0	0
RGL4	266747	hgsc.bcm.edu;broad.mit.edu	37	22	24041048	24041048	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	RGL4-228	NM_153615	exon11	c.A1400T	p.Q467L	CCTGCCAGCTGGA	.	51	15	29	1	.	0	0	0	0	0
MKL1	57591	hgsc.bcm.edu	37	22	40814737	40814737	+	Missense_Mutation	SNP	C	C	T	rs144888766		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MKL1-948	NM_020831	exon12	c.G1705A	p.A569T	GGGGGGCGGGGGC	.	11	4	7	2	C|0.980;T|0.020	1	0	1	0	0
EP300	2033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	41572951	41572951	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	EP300-2011	NM_001429	exon31	c.T5236A	p.C1746S	CATGCTTGCCAGT	.	241	84	142	1	.	26	15	11	0	0
OGG1	4968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	9793597	9793597	+	Missense_Mutation	SNP	A	A	G	rs144249605	byfrequency;alternate_allele	TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	OGG1-660	NM_016819	exon3	c.A529G	p.T177A	GATGTCACCTACC	.	193	64	133	2	A|0.999;T|0.001	22	14	8	0	0
MON1A	84315	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49946456	49946456	+	Silent	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MON1A-280	NM_032355	exon6	c.C1950T	p.L650L	ATAGGTGAGGGGC	.	126	38	68	0	.	11	10	1	0	0
RPL29	6159	hgsc.bcm.edu	37	3	52027876	52027876	+	Silent	SNP	G	G	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	RPL29-90	NM_000992	exon4	c.C369A	p.A123A	GGCCTTGGCCTTT	.	120	10	60	2	.	1681	1679	2	0	0
TMF1	7110	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	69096707	69096707	+	Silent	SNP	T	T	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	TMF1-90	NM_007114	exon2	c.A1149G	p.T383T	AACTAATGTTTCA	.	106	42	229	0	.	14	4	10	0	0
GPR128	84873	hgsc.bcm.edu;broad.mit.edu	37	3	100349576	100349576	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	GPR128-94	NM_032787	exon3	c.T257G	p.M86R	CCTATATGGGTTT	.	14	3	139	0	.	0	0	0	0	0
ZBTB11	27107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	101370247	101370247	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ZBTB11-91	NM_014415	exon11	c.A2925C	p.Q975H	GCTTTCTTGTTCC	.	258	75	421	1	.	10	6	4	0	0
PVRL3	25945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	110830989	110830989	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PVRL3-92	NM_001243286	exon2	c.G273A	p.W91X	TTCATGGGAGAAG	.	13	4	178	0	.	6	4	2	0	0
PIGZ	80235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	196675120	196675120	+	Silent	SNP	A	A	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PIGZ-93	NM_025163	exon3	c.T648A	p.L216L	GCCTCCAAGAAGC	.	271	114	139	0	.	10	3	7	0	0
GRK4	2868	broad.mit.edu	37	4	3039108	3039108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	GRK4-507	NM_182982	exon14	c.C1415T	p.A472V	CTCATGCCGTTTA	.	695	6	428	1	.	0	0	0	0	0
RFC1	5981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	39325032	39325032	+	Silent	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	RFC1-230	NM_002913	exon7	c.G648A	p.E216E	CTGCCTCTCCAGC	.	33	12	169	0	.	0	0	0	0	0
UGT2B7	7364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	69968643	69968643	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	UGT2B7-92	NM_001074	exon3	c.A989T	p.Q330L	TGGCCCAGATCCC	.	51	17	438	0	.	334	127	207	0	0
SULT1E1	6783	hgsc.bcm.edu	37	4	70713508	70713508	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SULT1E1-91	NM_005420	exon6	c.C499G	p.P167A	CATAAGGAACTAA	.	18	2	213	0	.	0	0	0	0	0
ANTXR2	118429	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	80992809	80992809	+	Splice_Site	SNP	C	C	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ANTXR2-23	NM_058172	exon3	c.153-1G>T	.	CCAGACCTGAAAG	.	79	21	112	0	.	0	0	0	0	0
STPG2	285555	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	98865112	98865112	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	.	NM_174952	exon8	c.A980C	p.N327T	GTCAAGTTAGGTA	.	29	9	329	0	.	0	0	0	0	0
NPY2R	4887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	156136059	156136059	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	NPY2R-523	NM_000910	exon2	c.T968G	p.L323R	ATCCCCTTCTCTA	.	247	84	159	0	.	0	0	0	0	0
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187549407	187549407	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	FAT1-34	NM_005245	exon9	c.G4711T	p.V1571F	CATAAACCCGCCC	.	90	34	50	2	.	31	19	12	0	0
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	26906161	26906161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	CDH9-99	NM_016279	exon5	c.G718A	p.D240N	CCATGTCTTTGGC	.	54	12	282	0	.	2	1	1	0	0
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu	37	5	139908303	139908303	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ANKHD1-185	NM_017747	exon29	c.G5772C	p.E1924D	CTCAGAGTCTGCT	.	54	4	159	0	.	70	70	0	0	0
PCDHA4	56144	hgsc.bcm.edu;broad.mit.edu	37	5	140186954	140186954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PCDHA4-96	NM_031500	exon1	c.C182T	p.P61L	TGGTGCCGCGCCT	.	336	29	186	2	.	14	1	0	13	0
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu	37	5	140221088	140221088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PCDHA8-92	NM_031856	exon1	c.C182T	p.P61L	TGGTGCCGCGCCT	.	455	26	241	0	.	14	1	0	13	0
MED7	9443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	156565887	156565887	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MED7-22	NM_001100816	exon2	c.A556C	p.T186P	GTTCAGTTTTTAC	.	121	45	267	0	.	33	21	12	0	0
SLC25A27	9481	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	46630133	46630133	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SLC25A27-90	NM_001204051	exon4	c.T404C	p.M135T	GAGGGATGATGGC	.	42	11	155	1	.	15	11	4	0	0
SLC22A16	85413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	110757106	110757106	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SLC22A16-91	NM_033125	exon6	c.C1370T	p.A457V	CCAAATGCTGCCC	.	125	39	185	0	.	0	0	0	0	0
MAP7	9053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	136709627	136709627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MAP7-90	NM_001198611	exon5	c.C496T	p.R166W	TGCGCCGTACAAC	.	137	46	237	1	.	30	16	14	0	0
SYNJ2	8871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	158449969	158449969	+	Silent	SNP	A	A	T	rs140060886	alternate_allele	TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SYNJ2-227	NM_003898	exon3	c.A396T	p.S132S	TTTCTCATGGCCA	.	235	70	133	0	A|1.000;G|0.000	2	2	0	0	0
DGKB	1607	broad.mit.edu	37	7	14712573	14712573	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	DGKB-276	NM_145695	exon12	c.C1115A	p.T372K	CAGATTGTTGTGG	.	2	2	14	0	.	0	0	0	0	0
NOD1	10392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	30475651	30475651	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	NOD1-229	NM_006092	exon11	c.A2584T	p.R862W	GGGCCCTCGCAAG	.	173	52	123	0	.	7	2	5	0	0
EIF4H	7458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	73601993	73601993	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	EIF4H-90	NM_022170	exon2	c.A112G	p.T38A	TTGCCCACAGAGC	.	422	133	296	0	.	80	44	35	0	0
POR	5447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	75615481	75615481	+	Missense_Mutation	SNP	A	A	G	rs72557954		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	POR-23	NM_000941	exon15	c.A1820G	p.Y607C	AGGTCTACGTCCA	.	41	19	28	0	A|0.999;G|0.001	0	0	0	0	0
BAIAP2L1	55971	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	97933661	97933661	+	Silent	SNP	G	G	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	BAIAP2L1-91	NM_018842	exon12	c.C1269T	p.T423T	GTTCACGGTGCTG	.	245	50	99	0	.	48	37	11	0	0
POLR2J	5439	hgsc.bcm.edu;broad.mit.edu	37	7	102119282	102119282	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	POLR2J-91	NM_006234	exon1	c.C26G	p.S9W	AAGAACGACTCGA	.	333	18	95	2	.	1414	1346	68	0	0
ANKRD7	56311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	117879989	117879989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ANKRD7-90	NM_019644	exon6	c.C739A	p.H247N	GCGAGCCATGGAA	.	221	31	88	0	.	9	5	4	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241029	131241029	+	Silent	SNP	G	G	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PODXL-136	NM_001018111	exon1	c.C90G	p.P30P	CTGGGAGGGCGAC	.	33	2	7	0	.	0	0	0	0	0
PRKAG2	51422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	151262972	151262972	+	Splice_Site	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PRKAG2-658	NM_016203	exon13	c.1234-1G>A	.	AGACATCTAAACG	.	87	31	151	0	.	3	1	2	0	0
SGCZ	137868	hgsc.bcm.edu	37	8	13948004	13948004	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SGCZ-93	NM_139167	exon8	c.C887G	p.A296G	ACTCCTGCTGGAG	.	26	2	230	0	.	0	0	0	0	0
FAM84B	157638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	127569250	127569250	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	FAM84B-22	NM_174911	exon2	c.C385G	p.Q129E	GGTACTGAGCCTG	.	156	43	109	0	.	46	17	29	0	0
NAPRT1	93100	hgsc.bcm.edu	37	8	144660318	144660318	+	Silent	SNP	G	G	T	rs896951		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	NAPRT1-91	NM_145201	exon1	c.C171A	p.A57A	GCCGGCGGCCAAG	.	14	9	6	2	T|0.001;C|0.985	3	3	0	0	0
SPATA31E1	286234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	90501484	90501484	+	Silent	SNP	C	C	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	.	NM_178828	exon4	c.C2082T	p.T694T	GAAGACCGGGTTC	.	234	65	160	0	.	0	0	0	0	0
NUP214	8021	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	134010301	134010301	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	NUP214-1131	NM_005085	exon8	c.A848T	p.H283L	AAAAGCACCCAGA	.	57	17	111	0	.	18	14	4	0	0
ZRSR2	8233	hgsc.bcm.edu	37	X	15841260	15841260	+	Silent	SNP	C	C	G	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ZRSR2-133	NM_005089	exon11	c.C1344G	p.R448R	GAGCCGCAGGAGC	.	50	5	31	0	.	3	3	0	0	0
SHROOM4	57477	hgsc.bcm.edu	37	X	50350752	50350752	+	Silent	SNP	T	T	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SHROOM4-131	NM_020717	exon6	c.A3390G	p.Q1130Q	CTCCTGTTGCTTC	.	103	6	55	1	.	1	1	0	0	0
HEPH	9843	hgsc.bcm.edu	37	X	65423314	65423314	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	HEPH-135	NM_138737	exon13	c.A2348C	p.Y783S	AACGCTACCAAGC	.	32	2	140	0	.	2	2	0	0	0
TREX2	11219	broad.mit.edu	37	X	152710189	152710189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	TREX2-227	NM_080701	exon2	c.C700A	p.L234M	CCTCCAGGCTGGG	.	19	5	12	0	.	0	0	0	0	0
CA6	765	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	9009376	9009376	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	CA6-516	NM_001270500	exon2	c.134delA	p.Q45fs	.	.	153	59	80	0	.	0	0	0	0	0
PABPC4	8761	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	40038242	40038242	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PABPC4-68	NM_001135653	exon2	c.210delC	p.D70fs	.	.	117	34	179	0	.	0	0	0	0	0
PABPC4	8761	hgsc.bcm.edu	37	1	40038242	40038244	+	In_Frame_Del	DEL	GTC	GTC	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	GTC	GTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	PABPC4-68	NM_001135653	exon2	c.208_210del	p.70_70del	.	.	118	23	179	0	.	0	0	0	0	0
LRRC4C	57689	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	40136626	40136630	+	Frame_Shift_Del	DEL	AGCAC	AGCAC	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	AGCAC	AGCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	LRRC4C-521	NM_001258419	exon7	c.1213_1217del	p.405_406del	.	.	222	50	484	0	.	0	0	0	0	0
CLEC4D	338339	broad.mit.edu;bcgsc.ca	37	12	8667926	8667932	+	Splice_Site	DEL	TAAGTTA	TAAGTTA	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	TAAGTTA	TAAGTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	CLEC4D-90	.	.	.	.	TTTGGGTAAGTTA	.	38	7	161	0	.	0	0	0	0	0
ITGA7	3679	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	56096870	56096870	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ITGA7-229	NM_002206	exon2	c.299delA	p.E100fs	.	.	363	130	250	0	.	0	0	0	0	0
KIAA1033	23325	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	105512257	105512259	+	In_Frame_Del	DEL	GTG	GTG	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	GTG	GTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	KIAA1033-91	NM_015275	exon7	c.469_471del	p.157_157del	.	.	36	11	194	0	.	0	0	0	0	0
OCA2	4948	broad.mit.edu	37	15	28200305	28200305	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	OCA2-135	NM_000275	exon17	c.1841delA	p.K614fs	GGTACCTTTTTTT	.	498	7	317	0	.	0	0	0	0	0
IRX3	79191	hgsc.bcm.edu	37	16	54317587	54317598	+	Frame_Shift_Del	DEL	TTTTTAAAGAAC	TTTTTAAAGAAC	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	TTTTTAAAGAAC	TTTTTAAAGAAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	IRX3-90	NM_024336	exon4	c.1506_1922del	p.502_502del	.	.	75	17	46	0	.	0	0	0	0	0
RAB11B	9230	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	8468330	8468331	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	RAB11B-227	NM_004218	exon5	c.545_546del	p.182_182del	.	.	255	75	178	0	.	0	0	0	0	0
DOCK6	57572	broad.mit.edu	37	19	11324999	11325018	+	Frame_Shift_Del	DEL	GGCACTCTGGGCACTGCCCA	GGCACTCTGGGCACTGCCCA	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	GGCACTCTGGGCACTGCCCA	GGCACTCTGGGCACTGCCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	DOCK6-93	NM_020812	exon34	c.4271_4290del	p.1424_1430del	GAAGAGGGCACTC	.	114	14	60	0	.	0	0	0	0	0
LCLAT1	253558	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	30863165	30863173	+	In_Frame_Del	DEL	GAAGAGAAA	GAAGAGAAA	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	GAAGAGAAA	GAAGAGAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	LCLAT1-92	NM_182551	exon7	c.925_933del	p.309_311del	.	.	178	28	226	0	.	0	0	0	0	0
MAT2A	4144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	85769094	85769097	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	AAGT	AAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MAT2A-90	NM_005911	exon5	c.548_549del	p.183_183del	.	.	52	14	151	0	.	0	0	0	0	0
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	34091451	34091451	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	CEP250-27	NM_007186	exon30	c.5254delA	p.K1752fs	.	.	311	105	166	0	.	0	0	0	0	0
C3orf17	25871	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	112736366	112736368	+	In_Frame_Del	DEL	CAT	CAT	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	CAT	CAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	C3orf17-90	NM_015412	exon2	c.188_190del	p.63_64del	.	.	86	23	162	0	.	0	0	0	0	0
STAG3L2	442582	broad.mit.edu	37	7	74300557	74300564	+	RNA	DEL	AGAGCTCC	AGAGCTCC	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	AGAGCTCC	AGAGCTCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	.	.	.	.	.	CAGTGAAGAGCTC	.	413	8	273	0	.	0	0	0	0	0
SEC16A	9919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	139369195	139369195	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	.	NM_014866	exon3	c.2873delC	p.P958fs	.	.	213	76	104	0	.	0	0	0	0	0
FGF3	2248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	69625463	69625464	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	FGF3-847	NM_005247	exon3	c.330_331insA	p.H110fs	.	.	174	54	132	0	.	0	0	0	0	0
SLC16A13	201232	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	6942168	6942169	+	In_Frame_Ins	INS	-	-	ATA	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	SLC16A13-92	NM_201566	exon3	c.1041_1042insATA	p.M347delinsMI	.	.	467	118	309	0	.	0	0	0	0	0
MZT2A	653784	hgsc.bcm.edu	37	2	132249519	132249520	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	MZT2A-68	NM_001085365	exon2	c.249_250insT	p.Q83fs	.	.	49	17	38	0	.	0	0	0	0	0
ZNFX1	57169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	47864026	47864027	+	Missense_Mutation	DNP	GT	GT	AG	novel		TCGA-B9-4116-01A-01D-1252-08	TCGA-B9-4116-10A-01D-1252-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	847c8d58-eb11-487b-bc85-d58a4d47fae7	21d19fa5-2fc4-4abc-8810-947be94de078	.	ZNFX1		exon14	c.A5534C	p.H1845P	AACCAGTGACCAC	.	229.0	85.0	142.0	0.0	.	0	0	0	0	0