Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SKI	6497	hgsc.bcm.edu	37	1	2160390	2160390	+	Missense_Mutation	SNP	C	C	G	rs28384811		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	SKI-838	NM_003036	exon1	c.C185G	p.A62G	TGCCGGCGCCGGT	.	2	2	1	1	C|0.953;G|0.047	1	0	1	0	0
FUCA1	2517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	24192102	24192102	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	FUCA1-153	NM_000147	exon2	c.A403G	p.T135A	TTGTCGTCAAAAC	.	153	34	129	1	.	0	0	0	0	0
CATSPER4	378807	ucsc.edu	37	1	26528995	26528995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	CATSPER4-91	NM_198137	exon10	c.T1381C	p.S461P	TCTAGCTCACAAA	.	31	4	21	0	.	0	0	0	0	0
PABPC4	8761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	40029530	40029530	+	Silent	SNP	C	C	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	PABPC4-68	NM_001135653	exon11	c.G1518A	p.L506L	GTCAGTCAGCCCT	.	116	51	97	0	.	140	85	55	0	0
BEST4	266675	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	45250593	45250593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	BEST4-91	NM_153274	exon7	c.T977C	p.I326T	CGGTCTATGAGCT	.	135	11	117	0	.	1	1	0	0	0
STXBP3	6814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	109302625	109302625	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	STXBP3-93	NM_007269	exon6	c.T356G	p.F119C	ATCTCTTTAACAA	.	216	94	172	0	.	34	18	16	0	0
CHD1L	9557	hgsc.bcm.edu	37	1	146727559	146727559	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	CHD1L-231	NM_004284	exon4	c.C439G	p.H147D	CGTTTTCATGTGC	.	36	2	34	0	.	9	9	0	0	0
ZNF687	57592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151259373	151259373	+	Silent	SNP	C	C	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	ZNF687-92	NM_020832	exon2	c.C606G	p.A202A	GCTGGCCCAGGAG	.	122	59	115	0	.	28	14	13	1	0
SPRR1A	6698	hgsc.bcm.edu;broad.mit.edu	37	1	152957850	152957850	+	Silent	SNP	C	C	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	SPRR1A-68	NM_005987	exon2	c.C144T	p.P48P	TGAGCCCTGCCAC	.	254	17	212	0	.	0	0	0	0	0
SPRR1B	6699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153004965	153004965	+	Silent	SNP	C	C	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	SPRR1B-69	NM_003125	exon2	c.C144T	p.P48P	TGAGCCCTGCCAC	.	264	105	274	0	.	0	0	0	0	0
DCAF8	50717	hgsc.bcm.edu	37	1	160209974	160209974	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	DCAF8-92	NM_015726	exon4	c.A236C	p.D79A	ATGCTGTCAGAGT	.	34	2	31	0	.	65	65	0	0	0
CUTC	51076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101507060	101507060	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	CUTC-153	NM_015960	exon6	c.A486C	p.L162F	CCTCTTAACCTTG	.	179	42	122	0	.	32	26	6	0	0
MCMBP	79892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	121598084	121598084	+	Silent	SNP	A	A	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	MCMBP-93	NM_024834	exon12	c.T1377C	p.D459D	AGTCTCATCGATT	.	80	29	60	0	.	59	37	22	0	0
RPS3	6188	hgsc.bcm.edu	37	11	75115876	75115876	+	Silent	SNP	G	G	T	rs139803355	alternate_allele	TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	RPS3-90	NM_001260506	exon6	c.G747T	p.P249P	AGAGCCGCCTGCC	.	88	5	72	0	G|0.999;A|0.001	1152	1125	0	1	26
ENDOD1	23052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	94862157	94862157	+	Missense_Mutation	SNP	C	C	G	rs61734147	alternate_allele	TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	ENDOD1-68	NM_015036	exon2	c.C917G	p.S306C	CCCTTTCTAGCAC	.	116	47	121	0	C|0.998;T|0.002	62	32	30	0	0
UBE4A	9354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118243839	118243839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	UBE4A-229	NM_004788	exon7	c.G781A	p.E261K	GTCATTGAAGCCT	.	89	42	94	0	.	13	10	3	0	0
MCAM	4162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	119183001	119183001	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	MCAM-137	NM_006500	exon8	c.T999G	p.S333R	TGGTTCACTCAGC	.	107	38	110	0	.	234	119	114	1	0
APOLD1	81575	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	12940182	12940182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	APOLD1-91	NM_001130415	exon2	c.C436T	p.R146W	AACTCCCGGGAGC	.	93	23	65	0	.	3	3	0	0	0
ANP32D	23519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48866497	48866497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	ANP32D-227	NM_012404	exon1	c.C50A	p.S17Y	CGCCCTCCGATGT	.	258	135	167	0	.	0	0	0	0	0
KRT77	374454	hgsc.bcm.edu	37	12	53086342	53086342	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	KRT77-187	NM_175078	exon7	c.C1290G	p.D430E	CTCCAGGTCCTGC	.	46	3	39	0	.	0	0	0	0	0
KRT4	3851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53205646	53205646	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	KRT4-96	NM_002272	exon2	c.G578C	p.S193T	AGGACACTGAGGT	.	124	44	71	0	.	0	0	0	0	0
LRRIQ1	84125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	85449852	85449852	+	Silent	SNP	G	G	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	LRRIQ1-95	NM_001079910	exon8	c.G1281T	p.V427V	TCTAGTGGATGAA	.	279	34	160	0	.	1	1	0	0	0
SYCP3	50511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	102125409	102125409	+	Silent	SNP	T	T	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	SYCP3-90	NM_001177949	exon7	c.A489G	p.Q163Q	TCTAGATTGTTGA	.	41	24	29	0	.	0	0	0	0	0
GATC	283459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	120884511	120884511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	GATC-22	NM_176818	exon2	c.C133T	p.L45F	CTAGCGCTTGTGG	.	121	34	58	0	.	42	27	15	0	0
GPR133	283383	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	131590407	131590407	+	Silent	SNP	C	C	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	GPR133-191	NM_198827	exon17	c.C1884A	p.G628G	GCCGGGCACGGTG	.	33	17	20	0	.	0	0	0	0	0
MNAT1	4331	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	61434959	61434959	+	Silent	SNP	T	T	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	MNAT1-523	NM_002431	exon8	c.T822C	p.H274H	AAACCATGTCAGA	.	102	33	110	0	.	0	0	0	0	0
MARK3	4140	hgsc.bcm.edu	37	14	103894758	103894758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	MARK3-360	NM_001128921	exon3	c.A278G	p.N93S	AGTTGAATCCAAC	.	12	8	3	0	.	30	15	15	0	0
PKD1	5310	ucsc.edu	37	16	2153595	2153595	+	Silent	SNP	G	G	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	PKD1-91	NM_000296	exon23	c.C8463T	p.D2821D	CACCACGTCACTG	.	248	3	146	1	.	67	54	13	0	0
TERF2	7014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	69402345	69402345	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	TERF2-227	NM_005652	exon6	c.G881C	p.S294T	CCTGTACTTGAGG	.	160	61	67	0	.	31	12	18	0	1
GINS2	51659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	85715212	85715212	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	GINS2-90	NM_016095	exon3	c.A281G	p.E94G	GTAAGTTCCATGT	.	130	66	50	0	.	30	18	11	1	0
YBX2	51087	hgsc.bcm.edu	37	17	7197633	7197633	+	Missense_Mutation	SNP	A	A	G	rs8069533		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	YBX2-90	NM_015982	exon1	c.T187C	p.S63P	TGCGGGAGCCCGG	.	4	2	1	1	A|0.584;G|0.416	0	0	0	0	0
COX10	1352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	14005508	14005508	+	Silent	SNP	T	T	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	COX10-226	NM_001303	exon4	c.T573A	p.L191L	CCTGCTTACTTCT	.	300	190	164	0	.	9	3	6	0	0
AATK	9625	hgsc.bcm.edu	37	17	79096100	79096100	+	Missense_Mutation	SNP	C	C	G	rs62073020		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	AATK-933	NM_001080395	exon11	c.G1636C	p.D546H	CGCAGTCAGGGTC	.	3	3	3	1	.	0	0	0	0	0
TXNL1	9352	bcgsc.ca	37	18	54293655	54293655	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	TXNL1-90	NM_004786	exon2	c.C132G	p.F44L	AGAACTGAATGCT	.	166	5	123	0	.	62	60	2	0	0
SMARCA4	6597	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11144469	11144469	+	Silent	SNP	C	C	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	SMARCA4-1523	NM_003072	exon27	c.C3801A	p.G1267G	CAGCGGCAGTGCC	.	69	9	46	0	.	17	13	4	0	0
FAM187B	148109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35718874	35718874	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	FAM187B-92	NM_152481	exon1	c.G710A	p.G237E	ATGGATCCTAAGG	.	37	13	26	0	.	0	0	0	0	0
FCGBP	8857	broad.mit.edu	37	19	40367841	40367841	+	Silent	SNP	T	T	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	FCGBP-98	NM_003890	exon29	c.A13119C	p.A4373A	AAGGGGTGCAGGG	.	56	17	48	7	.	115	108	7	0	0
ZNF780B	163131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40540794	40540794	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	ZNF780B-47	NM_001005851	exon5	c.C1972G	p.Q658E	GATGTTGAACAAG	.	310	113	263	2	.	6	5	1	0	0
ATP1A3	478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42492245	42492245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	ATP1A3-92	NM_001256214	exon4	c.C239T	p.P80L	GCGTTAGGCCCAT	.	133	16	118	0	.	0	0	0	0	0
ZNF836	162962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52660096	52660096	+	Silent	SNP	G	G	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	ZNF836-46	NM_001102657	exon5	c.C840T	p.G280G	GATCTTGCCACAT	.	114	46	69	0	.	4	4	0	0	0
ZNF264	9422	bcgsc.ca	37	19	57724137	57724137	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	ZNF264-92	NM_003417	exon4	c.C1672G	p.Q558E	CAGCATCAAAGGA	.	108	5	88	0	.	1	1	0	0	0
IFT172	26160	hgsc.bcm.edu	37	2	27704121	27704121	+	Silent	SNP	A	A	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	IFT172-154	NM_015662	exon8	c.T577C	p.L193L	TAACCAACTTCCC	.	29	2	22	0	.	0	0	0	0	0
LTBP1	4052	hgsc.bcm.edu;bcgsc.ca	37	2	33412006	33412006	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	LTBP1-230	NM_206943	exon6	c.C1285A	p.L429I	GGAAAACTTTGTC	.	57	20	68	0	.	0	0	0	0	0
GGCX	2677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	85777685	85777685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	GGCX-91	NM_000821	exon14	c.C2077A	p.R693S	TGCGGCGAAAGAC	.	92	42	85	0	.	0	0	0	0	0
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152507333	152507333	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	NEB-145	NM_004543	exon53	c.G6982A	p.D2328N	TTGGGTCATCTTG	.	287	142	231	0	.	0	0	0	0	0
RAPGEF4	11069	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	173832042	173832042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	RAPGEF4-274	NM_007023	exon10	c.G874A	p.D292N	CTGGATGATGAGC	.	33	18	23	0	.	0	0	0	0	0
TNS1	7145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	218712984	218712984	+	Silent	SNP	G	G	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	TNS1-156	NM_022648	exon17	c.C1881G	p.P627P	CAGCTGGGGTTCA	.	79	37	59	0	.	31	20	11	0	0
MYEOV2	150678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	241073371	241073371	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	MYEOV2-68	NM_138336	exon2	c.G208C	p.V70L	CATGAACGGCCTT	.	168	65	132	0	.	142	79	63	0	0
FRG1B	284802	bcgsc.ca	37	20	29628229	29628229	+	RNA	SNP	G	G	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	FRG1B-22	.	.	.	.	TTAGGGGAAAATG	.	519	29	301	5	.	0	0	0	0	0
SCARF2	91179	broad.mit.edu	37	22	20791897	20791897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	SCARF2-341	NM_182895	exon1	c.C145A	p.R49S	GGCCGCGAGGGTT	.	16	7	17	0	.	0	0	0	0	0
TTLL3	26140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	9877081	9877081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	TTLL3-585	NM_001025930	exon13	c.G2656A	p.V886M	AAACAAGTGAAGT	.	311	108	160	0	.	2	2	0	0	0
NISCH	11188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52526307	52526307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	NISCH-93	NM_007184	exon21	c.C4324A	p.L1442I	CATGACCTCATGG	.	441	133	309	0	.	48	32	16	0	0
KIAA2018	205717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113376680	113376680	+	Silent	SNP	G	G	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	KIAA2018-93	NM_001009899	exon7	c.C3849A	p.G1283G	TTGACTGCCATAG	.	222	140	165	0	.	2	0	2	0	0
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	123254840	123254840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	KIAA1109-80	NM_015312	exon66	c.A11522G	p.K3841R	AGAAGAAGTTTCA	.	46	23	37	0	.	16	5	11	0	0
NUDT6	11162	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	123843660	123843660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	NUDT6-90	NM_007083	exon1	c.C68T	p.S23L	CCCGCCGAAGGCC	.	39	5	32	0	.	6	5	1	0	0
CBR4	84869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	169931208	169931208	+	Silent	SNP	G	G	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	CBR4-90	NM_032783	exon1	c.C33A	p.S11S	GCCTCGGGAGCCT	.	44	22	49	0	.	35	20	15	0	0
FAT1	2195	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	187540602	187540602	+	Missense_Mutation	SNP	C	C	T	rs201352448		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	FAT1-34	NM_005245	exon10	c.G7138A	p.V2380I	CGGTAACGTCCAC	.	67	35	52	0	C|0.999;T|0.001	79	36	43	0	0
ARHGEF28	64283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	73136427	73136427	+	Silent	SNP	T	T	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	.	NM_001080479	exon11	c.T1269C	p.S423S	AACCAGTCCCAGT	.	57	27	54	0	.	6	3	3	0	0
CDKL3	51265	hgsc.bcm.edu	37	5	133695635	133695635	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	CDKL3-389	NM_001113575	exon3	c.T313G	p.Y105D	AGAGGTATTTTCT	.	17	8	6	0	.	0	0	0	0	0
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	38704982	38704982	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	DNAH8-615	NM_001206927	exon6	c.A902T	p.E301V	AATCTGAAAAACA	.	108	50	70	0	.	0	0	0	0	0
DFNA5	1687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	24745817	24745817	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	DFNA5-91	NM_001127453	exon8	c.T1169A	p.V390D	GCACTGACCAAGA	.	164	95	100	0	.	0	0	0	0	0
SGK223	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	8235103	8235103	+	Silent	SNP	A	A	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	.	NM_001080826	exon2	c.T816A	p.T272T	ACCTGCAGTCTGG	.	34	22	32	0	.	18	12	6	0	0
GPR124	25960	hgsc.bcm.edu	37	8	37699293	37699293	+	Missense_Mutation	SNP	T	T	C	rs111828443		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	GPR124-157	NM_032777	exon19	c.T3437C	p.V1146A	GTCAGGTGTGCGA	.	4	2	3	1	T|0.500;C|0.500	0	0	0	0	0
NPBWR1	2831	ucsc.edu	37	8	53852861	53852861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	NPBWR1-155	NM_005285	exon1	c.G394A	p.A132T	ATGAGCGCCGACC	.	37	4	39	0	.	0	0	0	0	0
NIPAL2	79815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	99215364	99215364	+	Silent	SNP	A	A	T	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	NIPAL2-90	NM_024759	exon8	c.T852A	p.I284I	AAAGAAAATATGA	.	122	58	99	0	.	2	1	1	0	0
JRK	8629	hgsc.bcm.edu	37	8	143745894	143745894	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	.	NM_003724	exon3	c.G1582C	p.V528L	TCCTCACCTGCTG	.	27	2	16	0	.	2	2	0	0	0
C9orf91	203197	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	117400851	117400851	+	Silent	SNP	T	T	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	C9orf91-91	NM_153045	exon8	c.T694C	p.L232L	AGCCAGTTGTGTG	.	175	76	168	0	.	10	5	5	0	0
PHF16	9767	hgsc.bcm.edu	37	X	46918438	46918438	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	PHF16-130	NM_001077445	exon11	c.A2431G	p.S811G	GGTAAAAGCAAGA	.	52	3	32	0	.	14	14	0	0	0
HUWE1	10075	ucsc.edu	37	X	53607789	53607789	+	Splice_Site	SNP	A	A	G	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	HUWE1-280	NM_031407	exon44	c.5716+2T>C	.	AAACTTACCAGTT	.	40	4	28	0	.	0	0	0	0	0
ZMYM3	9203	hgsc.bcm.edu	37	X	70468027	70468027	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	ZMYM3-131	NM_005096	exon11	c.A1960G	p.S654G	AGAAGCTTTTCTC	.	18	2	17	0	.	16	16	0	0	0
PHKA1	5255	hgsc.bcm.edu;ucsc.edu	37	X	71822085	71822085	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	PHKA1-134	NM_002637	exon27	c.A2956G	p.I986V	CGTGGATAGAAAT	.	39	4	21	0	.	5	5	0	0	0
CCDC160	347475	hgsc.bcm.edu	37	X	133379028	133379028	+	Silent	SNP	T	T	C	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	CCDC160-40	NM_001101357	exon2	c.T198C	p.Y66Y	AAAATATATTTTC	.	5	4	1	1	.	2	0	2	0	0
C1orf54	79630	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	150248209	150248212	+	Splice_Site	DEL	GTGA	GTGA	-	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	GTGA	GTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	C1orf54-90	.	.	.	.	.	.	75	17	48	0	.	0	0	0	0	0
LIPA	3988	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	90974746	90974746	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	LIPA-90	NM_000235	exon10	c.1039delC	p.L347fs	.	.	156	63	131	0	.	0	0	0	0	0
LTBP1	4052	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	33412000	33412000	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	LTBP1-230	NM_206943	exon6	c.1279delG	p.G427fs	.	.	57	20	64	0	.	0	0	0	0	0
BCLAF1	9774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	136582550	136582550	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	BCLAF1-228	NM_014739	exon12	c.2610delA	p.Q870fs	.	.	614	103	379	0	.	0	0	0	0	0
CSPP1	79848	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	68070755	68070755	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	CSPP1-138	NM_024790	exon18	c.2300delG	p.R767fs	.	.	47	13	49	0	.	0	0	0	0	0
REPIN1	29803	hgsc.bcm.edu;broad.mit.edu	37	7	150068863	150068864	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-7268-01A-11D-2136-08	TCGA-B9-7268-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	23d1496c-de52-4d78-ba63-f8f751d546d5	d08b6d62-3120-49a5-9cd5-c671278e2eb8	.	REPIN1-69	NM_001099695	exon3	c.704_705insA	p.I235fs	.	.	41	10	38	0	.	0	0	0	0	0