Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
HTR6	3362	broad.mit.edu	37	1	20005583	20005583	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	HTR6-91	NM_000871	exon3	c.G1045T	p.A349S	AGCCTGGCCTCGC	.	80	11	43	2	.	0	0	0	0	0
PITHD1	57095	hgsc.bcm.edu	37	1	24105128	24105128	+	Silent	SNP	A	A	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	PITHD1-90	NM_020362	exon1	c.A123G	p.Q41Q	GCTGCAATGCCTT	.	17	7	4	0	.	14	10	4	0	0
CATSPER4	378807	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	26524220	26524220	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	CATSPER4-91	NM_198137	exon4	c.T503A	p.L168H	TCTTGCTCTTGCG	.	84	29	82	1	.	0	0	0	0	0
RLF	6018	broad.mit.edu;bcgsc.ca	37	1	40702398	40702398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	RLF-93	NM_012421	exon8	c.G2024A	p.G675D	GTCCCGGTACAGA	.	46	20	51	1	.	7	2	5	0	0
HFM1	164045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	91742587	91742587	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	HFM1-112	NM_001017975	exon31	c.G3424C	p.E1142Q	TGCATTCTCGGTT	.	88	30	109	0	.	1	0	1	0	0
SLC44A3	126969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	95330398	95330398	+	Silent	SNP	T	T	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	SLC44A3-91	NM_001114106	exon11	c.T1338A	p.S446S	AATCTCTGTGGTG	.	68	22	87	0	.	210	127	83	0	0
CHD1L	9557	ucsc.edu;bcgsc.ca	37	1	146765335	146765335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	CHD1L-231	NM_004284	exon21	c.T2435C	p.L812P	ATGTCCTGTCTGG	.	43	4	59	0	.	21	21	0	0	0
GON4L	54856	broad.mit.edu	37	1	155733245	155733245	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	GON4L-93	NM_001037533	exon22	c.G4584A	p.E1528E	TTCTTCCTCCTCT	.	55	5	32	0	.	7	7	0	0	0
RGL1	23179	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	183885769	183885769	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	RGL1-725	NM_015149	exon17	c.T2043G	p.N681K	ACAGAATGAAGAC	.	93	41	97	1	.	8	3	5	0	0
KLHDC8A	55220	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	205308913	205308913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	KLHDC8A-91	NM_018203	exon3	c.G400A	p.G134R	CCATCCCGCCTGC	.	93	51	146	0	.	0	0	0	0	0
DNAH14	127602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	225546329	225546329	+	Silent	SNP	T	T	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	DNAH14-23	NM_001373	exon72	c.T11472C	p.T3824T	CAGAACTCCGCTG	.	70	32	95	0	.	0	0	0	0	0
HK1	3098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	71128300	71128300	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	HK1-252	NM_033498	exon8	c.G516A	p.L172L	CATCCTGATCACC	.	171	68	180	0	.	0	0	0	0	0
HOGA1	112817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	99358955	99358955	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	HOGA1-90	NM_138413	exon3	c.C450T	p.L150L	GGCCCTCATTCAC	.	88	35	124	0	.	102	70	32	0	0
SLC18A2	6571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	119003520	119003520	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	SLC18A2-90	NM_003054	exon3	c.G160T	p.E54X	AAGCATGAGAAGA	.	64	29	88	0	.	0	0	0	0	0
ARL14EP	120534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	30352522	30352522	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	.	NM_152316	exon2	c.C27T	p.V9V	TGGAGTCCAGCTT	.	328	142	360	0	.	20	7	13	0	0
CCDC85B	11007	hgsc.bcm.edu	37	11	65658488	65658488	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	CCDC85B-90	NM_006848	exon1	c.C234T	p.R78R	GCTGCGCGACCTC	.	19	9	0	0	.	22	9	13	0	0
SDHD	6392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	111958619	111958619	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	SDHD-226	NM_003002	exon2	c.A91G	p.T31A	GCTCATATCTCAG	.	60	26	67	0	.	150	77	73	0	0
KANSL2	54934	bcgsc.ca	37	12	49073469	49073469	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	.	NM_017822	exon3	c.A399T	p.E133D	ACTACTTTCTGGA	.	122	64	82	0	.	14	14	0	0	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49432161	49432161	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	MLL2-612	NM_003482	exon34	c.T8978G	p.L2993R	TCATCCAGCTCGG	.	173	49	153	0	.	7	5	2	0	0
RHEBL1	121268	broad.mit.edu;bcgsc.ca	37	12	49460045	49460045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	RHEBL1-659	NM_144593	exon6	c.G349T	p.V117L	TCCCCACTAGAAC	.	112	68	99	2	.	0	0	0	0	0
RAB5B	5869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56384574	56384574	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	RAB5B-227	NM_002868	exon4	c.A424G	p.M142V	AAACGTATGGTGG	.	151	87	102	0	.	159	58	101	0	0
LRP1	4035	broad.mit.edu	37	12	57566959	57566959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	LRP1-596	NM_002332	exon21	c.C3172A	p.P1058T	ACGAGGCCCCCTG	.	44	4	41	1	.	0	0	0	0	0
SLC17A8	246213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	100811853	100811853	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	SLC17A8-93	NM_139319	exon11	c.T1344G	p.I448M	CAGCATTCTCATG	.	103	73	86	0	.	1	0	1	0	0
ACACB	32	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	109702126	109702126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ACACB-98	NM_001093	exon49	c.G6877A	p.V2293M	CACCAGGTGGCGG	.	104	55	125	1	.	25	7	18	0	0
PEBP1	5037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	118575948	118575948	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	PEBP1-779	NM_002567	exon2	c.A240C	p.K80N	TCCCAAATACAGG	.	73	24	35	0	.	0	0	0	0	0
RXFP2	122042	bcgsc.ca	37	13	32360573	32360573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	RXFP2-90	NM_130806	exon12	c.T983C	p.L328S	AAGACTTGAAGCT	.	67	5	58	0	.	0	0	0	0	0
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	77714983	77714983	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	MYCBP2-236	NM_015057	exon50	c.A7399G	p.K2467E	TAACCTTATTAGG	.	107	6	124	0	.	0	0	0	0	0
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	65253201	65253201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	SPTB-100	NM_001024858	exon15	c.G3482A	p.S1161N	GTGTGGCTGCGGC	.	80	30	98	0	.	0	0	0	0	0
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42166194	42166194	+	Missense_Mutation	SNP	A	A	C	rs199969875	alternate_allele	TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	SPTBN5-91	NM_016642	exon25	c.T4634G	p.L1545R	GAACTCAGCACCC	.	26	10	29	0	.	0	0	0	0	0
TGM7	116179	broad.mit.edu	37	15	43571977	43571977	+	Silent	SNP	C	C	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	TGM7-92	NM_052955	exon10	c.G1524T	p.L508L	CAGCAGCAGCTGC	.	35	5	36	1	.	0	0	0	0	0
VPS13C	54832	broad.mit.edu	37	15	62207846	62207846	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	VPS13C-92	NM_020821	exon61	c.T8431A	p.F2811I	TAGTAAAAATGTT	.	31	4	34	1	.	7	7	0	0	0
SMAD6	4091	hgsc.bcm.edu	37	15	66995735	66995735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	SMAD6-415	NM_005585	exon1	c.C139T	p.P47S	CCGGCCCCGCGGG	.	43	26	4	0	.	1	1	0	0	0
ISLR	3671	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	74468065	74468065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ISLR-155	NM_201526	exon2	c.G866T	p.G289V	CTGATGGGCGTGC	.	121	69	125	1	.	1	1	0	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79083052	79083052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ADAMTS7-226	NM_014272	exon6	c.G988A	p.A330T	GATGGGCATCCCC	.	78	4	84	0	.	2	2	0	0	0
VASN	114990	broad.mit.edu	37	16	4432543	4432543	+	Silent	SNP	A	A	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	VASN-68	NM_138440	exon2	c.A1665C	p.T555T	CCATACACCCCCA	.	135	32	20	2	.	17	17	0	0	0
GPR97	222487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	57713092	57713092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	GPR97-91	NM_170776	exon5	c.C496T	p.P166S	CAGGGCCCCCGGC	.	90	25	68	0	.	0	0	0	0	0
ZFHX3	463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72821093	72821093	+	Silent	SNP	G	G	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ZFHX3-72	NM_006885	exon10	c.C11082A	p.T3694T	TACACTGGTCAGA	.	127	37	112	0	.	4	2	2	0	0
CLEC18B	497190	broad.mit.edu;bcgsc.ca	37	16	74444869	74444869	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	CLEC18B-90	NM_001011880	exon9	c.C1048A	p.L350M	GGCCCAGATAGAA	.	588	122	592	0	.	0	0	0	0	0
GALNS	2588	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	88889080	88889080	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	GALNS-153	NM_000512	exon12	c.C1281T	p.V427V	AGTTGTGACCCCT	.	251	75	205	0	.	31	20	11	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	498	29	325	23	.	40	8	32	0	0
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18058522	18058522	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	MYO15A-97	NM_016239	exon45	c.C8323T	p.R2775C	TTCTCCCGCATCT	.	108	12	65	0	.	0	0	0	0	0
AATF	26574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	35345926	35345926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	AATF-90	NM_012138	exon6	c.G1056A	p.M352I	CTTCATGGCAAAG	.	157	84	82	0	.	69	22	47	0	0
KRTAP9-1	728318	hgsc.bcm.edu	37	17	39346591	39346591	+	Silent	SNP	C	C	T	rs76923645		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	.	NM_001190460	exon1	c.C453T	p.P151P	CCAGCCCACCTGC	.	178	55	108	0	C|0.500;T|0.500	0	0	0	0	0
SCPEP1	59342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	55058480	55058480	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	SCPEP1-91	NM_021626	exon2	c.A114C	p.E38D	CAAGGAAGTATGG	.	338	161	235	1	.	9	4	5	0	0
NACA2	342538	ucsc.edu	37	17	59668318	59668318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	NACA2-91	NM_199290	exon1	c.G224A	p.R75K	CGTGCCCTCTTTT	.	277	4	137	1	.	1895	0	1895	0	0
SPHK1	8877	hgsc.bcm.edu	37	17	74381682	74381682	+	Missense_Mutation	SNP	C	C	T	rs56342542		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	SPHK1-1107	NM_182965	exon2	c.C215T	p.T72I	CCCCCACAGCGCC	.	43	15	3	0	C|0.988;T|0.012	3	1	2	0	0
P4HB	5034	broad.mit.edu	37	17	79813349	79813349	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	P4HB-46	NM_000918	exon3	c.G466T	p.A156S	TGACAGCCACCTC	.	104	5	70	0	.	600	598	1	1	0
GREB1L	80000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	19020247	19020247	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	.	NM_001142966	exon9	c.G967C	p.G323R	ATTTCTGGGCCAC	.	67	26	66	0	.	0	0	0	0	0
DCC	1630	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	50985743	50985743	+	Silent	SNP	T	T	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	DCC-225	NM_005215	exon24	c.T3534A	p.S1178S	GGACTCTCCCATC	.	45	24	55	1	.	0	0	0	0	0
SERPINB8	5271	broad.mit.edu	37	18	61654493	61654493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	SERPINB8-226	NM_198833	exon7	c.G1106T	p.G369V	TCTGTGGCAGGTT	.	71	7	78	2	.	2	2	0	0	0
DOHH	83475	broad.mit.edu	37	19	3496745	3496745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	DOHH-90	NM_001145165	exon2	c.C68A	p.A23D	AAGCGGGCCTGCA	.	82	6	23	0	.	20	20	0	0	0
ZNF443	10224	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12541862	12541862	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ZNF443-91	NM_005815	exon4	c.A1124G	p.D375G	GGACAATCAAAGC	.	127	39	132	1	.	5	3	2	0	0
ZSWIM4	65249	broad.mit.edu	37	19	13928686	13928686	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ZSWIM4-90	NM_023072	exon8	c.A1469T	p.K490M	AGGACAAGGTGGT	.	130	5	84	0	.	21	21	0	0	0
PODNL1	79883	hgsc.bcm.edu	37	19	14044012	14044012	+	Silent	SNP	G	G	A	rs79400921		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	PODNL1-90	NM_024825	exon8	c.C1045T	p.L349L	GGTCCAGCCCATT	.	24	9	0	0	.	0	0	0	0	0
CYP4F3	4051	ucsc.edu;bcgsc.ca	37	19	15760902	15760902	+	Missense_Mutation	SNP	G	G	A	rs113330239		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	CYP4F3-93	NM_001199209	exon7	c.G827A	p.R276H	GGCGCCGCACCCT	.	202	91	254	2	G|0.500;A|0.500	0	0	0	0	0
CPAMD8	27151	broad.mit.edu	37	19	17086849	17086849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	CPAMD8-141	NM_015692	exon16	c.A2012G	p.Y671C	AGCAGGTAGACAC	.	154	3	174	2	.	0	0	0	0	0
LRRC25	126364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18507658	18507658	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	LRRC25-90	NM_145256	exon1	c.G116C	p.S39T	GTGGCACTGAACT	.	195	85	256	1	.	4	4	0	0	0
ZNF14	7561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19822257	19822257	+	Silent	SNP	T	T	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ZNF14-517	NM_021030	exon4	c.A1833C	p.G611G	TTTCTCTCCAGTG	.	84	38	64	0	.	13	7	6	0	0
ZNF180	7733	bcgsc.ca	37	19	44981544	44981544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ZNF180-92	NM_013256	exon5	c.A1154G	p.E385G	CCACATTCACTAC	.	51	4	62	0	.	6	6	0	0	0
ZNF835	90485	hgsc.bcm.edu	37	19	57175950	57175950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ZNF835-72	NM_001005850	exon2	c.T617C	p.V206A	TGCGTGACGCGCG	.	46	19	0	0	.	0	0	0	0	0
DHX57	90957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	39088916	39088916	+	Silent	SNP	T	T	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	DHX57-228	NM_198963	exon5	c.A636G	p.A212A	TAGTGATGCTCCC	.	120	66	107	0	.	10	4	6	0	0
PDE11A	50940	broad.mit.edu	37	2	178936708	178936708	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	PDE11A-93	NM_016953	exon1	c.C457T	p.R153X	TCCGTCGTACACT	.	120	4	145	1	.	0	0	0	0	0
STK11IP	114790	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220473931	220473931	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	STK11IP-91	NM_052902	exon16	c.T1955C	p.V652A	CAGCTGTCCAGGT	.	89	35	82	0	.	0	0	0	0	0
INPP5D	3635	broad.mit.edu	37	2	234102516	234102516	+	Silent	SNP	G	G	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	INPP5D-652	.	.	.	.	CTACACGCCTCTC	.	81	5	91	0	.	5	5	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29623219	29623219	+	RNA	SNP	A	A	G	rs34726194		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	FRG1B-22	.	.	.	.	TCGACAATGGTCT	.	961	30	827	14	.	155	155	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29628225	29628225	+	RNA	SNP	A	A	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	FRG1B-22	NR_003579	exon5	c.529-2A>G	.	TCACTTAGGGGAA	.	1107	42	939	16	.	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29628283	29628283	+	RNA	SNP	G	G	C	rs200164543		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	FRG1B-22	.	.	.	.	AGCAGGGGACATA	.	928	34	808	11	.	186	186	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29632680	29632680	+	RNA	SNP	G	G	A	rs4892355		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	FRG1B-22	.	.	.	.	TAAAAAGGCTCAG	.	758	72	592	28	G|0.500;A|0.500	116	116	0	0	0
BPIFB4	149954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	31685559	31685559	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	.	NM_182519	exon11	c.A1535T	p.K512I	AGCCCAAAGACCT	.	169	79	137	0	.	0	0	0	0	0
XIRP1	165904	broad.mit.edu	37	3	39229085	39229085	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	XIRP1-158	NM_001198621	exon2	c.A1852T	p.T618S	TGGCTGTGGGATC	.	53	3	53	0	.	0	0	0	0	0
ATXN7	6314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	63983337	63983337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ATXN7-90	NM_001177387	exon12	c.C2702T	p.T901I	CAGCAACATCACC	.	66	27	64	0	.	3	1	2	0	0
ITGB5	3693	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	124515325	124515325	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ITGB5-227	NM_002213	exon10	c.T1603A	p.C535S	CGAAGCAGGAGCA	.	77	29	100	1	.	65	42	23	0	0
TOPBP1	11073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	133331389	133331389	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	TOPBP1-540	NM_007027	exon24	c.G3879A	p.L1293L	TATCACCAATCCA	.	52	20	69	0	.	0	0	0	0	0
KLHL6	89857	broad.mit.edu	37	3	183217515	183217515	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	KLHL6-93	NM_130446	exon4	c.T1010G	p.V337G	CAGGTCACCTCTG	.	73	7	91	4	.	2	2	0	0	0
CLDN16	10686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	190126252	190126252	+	Missense_Mutation	SNP	T	T	G	rs143316426	byfrequency;alternate_allele	TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	CLDN16-227	NM_006580	exon4	c.T742G	p.L248V	TGCTTTTTGGCTG	.	78	40	69	0	T|0.999;C|0.001	5	5	0	0	0
PLK4	10733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	128813596	128813596	+	Silent	SNP	T	T	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	PLK4-333	NM_014264	exon10	c.T2115C	p.Y705Y	CACTTATTTTACA	.	115	31	72	0	.	5	2	3	0	0
CPE	1363	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	166300624	166300624	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	CPE-155	NM_001873	exon1	c.A251C	p.E84A	GCTTCGAGGGCCG	.	156	91	111	0	.	67	15	52	0	0
SHROOM1	134549	broad.mit.edu	37	5	132160935	132160935	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	SHROOM1-91	NM_133456	exon1	c.C898A	p.P300T	TGGCGGGCCTGAA	.	87	8	69	0	.	3	3	0	0	0
FAM13B	51306	broad.mit.edu	37	5	137289150	137289150	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	.	NM_001101800	exon15	c.C1657T	p.R553X	ATCTTCGAATTCT	.	80	5	42	0	.	0	0	0	0	0
HIGD2A	192286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	175816407	175816407	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	HIGD2A-90	NM_138820	exon2	c.T230A	p.L77H	CTCAGCTCATGAT	.	141	35	135	0	.	788	517	271	0	0
UNC5A	90249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176300996	176300996	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	UNC5A-91	NM_133369	exon7	c.T914G	p.L305R	TGGCCCTCTATGT	.	113	68	102	0	.	0	0	0	0	0
ECI2	10455	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	4130664	4130664	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ECI2-90	NM_206836	exon4	c.A443C	p.D148A	ATGCCATCTTCGG	.	88	24	106	1	.	131	72	59	0	0
TNFRSF21	27242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	47254097	47254097	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	TNFRSF21-227	NM_014452	exon2	c.C331T	p.Q111X	ATGGCTGACTACA	.	136	61	137	0	.	47	33	14	0	0
CEP85L	387119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	118790282	118790282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	.	NM_001178035	exon13	c.G2216A	p.R739H	TGAGCACGCTGAT	.	105	22	121	0	.	1	0	1	0	0
KIAA1244	57221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	138656258	138656258	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	KIAA1244-228	NM_020340	exon33	c.G6275A	p.R2092K	ACAAGAGGCCCCG	.	19	8	28	0	.	0	0	0	0	0
ANLN	54443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	36446013	36446013	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ANLN-517	NM_018685	exon4	c.A711C	p.K237N	ATCCAAATTTTCC	.	89	49	104	0	.	0	0	0	0	0
ASH2L	9070	broad.mit.edu	37	8	37978552	37978552	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	ASH2L-131	NM_004674	exon10	c.G1050A	p.P350P	TGATCCGCACGCC	.	204	6	120	1	.	87	86	0	0	1
C8orf82	414919	hgsc.bcm.edu	37	8	145753110	145753110	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	C8orf82-44	NM_001001795	exon3	c.G267T	p.E89D	AGCGGCCTCGTAG	.	30	16	8	0	.	87	46	41	0	0
CERCAM	51148	broad.mit.edu	37	9	131186698	131186698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	CERCAM-69	NM_016174	exon5	c.C571T	p.R191C	TACTACCGCCGCA	.	51	3	79	0	.	9	9	0	0	0
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	118219440	118219440	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	KIAA1210-67	NM_020721	exon12	c.A4754C	p.K1585T	TTCTGCTTCTGCT	.	46	6	29	0	.	0	0	0	0	0
KANSL2	54934	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49073468	49073468	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	.	NM_017822	exon3	c.400delA	p.S134fs	.	.	122	64	81	0	.	0	0	0	0	0
KANSL2	54934	hgsc.bcm.edu	37	12	49073468	49073469	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	.	NM_017822	exon3	c.399_400del	p.133_134del	.	.	122	41	82	0	.	0	0	0	0	0
TM9SF1	10548	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24661497	24661519	+	Frame_Shift_Del	DEL	CTGCTGAGTTAATGGCCCCATGA	CTGCTGAGTTAATGGCCCCATGA	-	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	CTGCTGAGTTAATGGCCCCATGA	CTGCTGAGTTAATGGCCCCATGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	TM9SF1-91	NM_001014842	exon4	c.1011_1033del	p.337_345del	.	.	209	48	253	0	.	0	0	0	0	0
HERC2	8924	bcgsc.ca	37	15	28456185	28456185	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	HERC2-234	NM_004667	exon44	c.7032delT	p.S2344fs	TGGCTGAGACAGG	.	406	140	409	1	.	0	0	0	0	0
LIN37	55957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	36243734	36243734	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	.	NM_019104	exon4	c.191delG	p.R64fs	.	.	73	28	83	0	.	0	0	0	0	0
COL18A1	80781	broad.mit.edu	37	21	46911183	46911183	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	COL18A1-90	NM_030582	exon21	c.2652delC	p.G884fs	CCCTGGCCCCCCC	.	451	7	260	0	.	0	0	0	0	0
DOCK3	1795	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	51393580	51393580	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	DOCK3-22	NM_004947	exon42	c.4310delG	p.R1437fs	.	.	199	65	232	0	.	0	0	0	0	0
RECQL4	9401	broad.mit.edu	37	8	145738764	145738764	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	RECQL4-1083	NM_004260	exon15	c.2300delT	p.V767fs	ACCACCACCCGGC	.	181	7	92	0	.	0	0	0	0	0
NCOR2	9612	hgsc.bcm.edu	37	12	124824739	124824740	+	Frame_Shift_Ins	INS	-	-	GCCG	rs61519723	bycluster;alternate_allele	TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	NCOR2-229	NM_006312	exon39	c.5500_5501insCGGC	p.S1834fs	.	.	61	11	10	0	GCCGCTGCT|1.000;|0.000	0	0	0	0	0
NBEAL1	65065	hgsc.bcm.edu;bcgsc.ca	37	2	204009565	204009566	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	NBEAL1-92	NM_001114132	exon31	c.5004_5005insT	p.S1668fs	.	.	45	16	52	0	.	0	0	0	0	0
DNAH1	25981	hgsc.bcm.edu;bcgsc.ca	37	3	52402933	52402934	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	DNAH1-67	NM_015512	exon37	c.5942_5943insG	p.E1981fs	.	.	131	33	178	0	.	0	0	0	0	0
KDM2B	84678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	121881832	121881833	+	Missense_Mutation	DNP	GC	GC	AA	novel		TCGA-B9-A5W9-01A-11D-A28G-10	TCGA-B9-A5W9-10A-01D-A28G-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ad4535df-a616-4440-8204-9a498d22beb5	869fc941-e464-4427-8385-d302bb618ea9	.	KDM2B-638	NM_001005366	exon16	c.G2340T	p.E811D	ACTCAGCTCCTGG	.	53.0	12.0	55.0	0.0	.	0	0	0	0	0