Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PLCH2	9651	ucsc.edu;bcgsc.ca	37	1	2415964	2415964	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	PLCH2-229	NM_014638	exon5	c.C723T	p.R241R	CACCCGCCGGGAC	.	39	4	57	0	.	0	0	0	0	0
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	12327038	12327038	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	VPS13D-95	NM_015378	exon14	c.T1695C	p.T565T	AGGAACTATGTTT	.	168	30	141	0	.	1	1	0	0	0
MTF1	4520	broad.mit.edu	37	1	38323066	38323066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	MTF1-92	NM_005955	exon2	c.A265G	p.M89V	GGGACATTGCTTC	.	179	4	178	0	.	1	1	0	0	0
PTPRF	5792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	44058242	44058242	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	PTPRF-232	NM_002840	exon11	c.C1783G	p.P595A	TTCACCCCCACCA	.	81	32	96	1	.	7	1	6	0	0
POMGNT1	55624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	46654508	46654508	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	POMGNT1-91	NM_001243766	exon23	c.C2130A	p.N710K	CCATGGGTTGGGC	.	71	9	72	0	.	35	30	5	0	0
FAM73A	374986	bcgsc.ca	37	1	78325733	78325733	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	FAM73A-91	NM_198549	exon11	c.T1197C	p.L399L	AATTCTTTCAGAA	.	82	4	46	0	.	12	12	0	0	0
C1orf52	148423	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	85725088	85725088	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	C1orf52-91	NM_198077	exon1	c.A229C	p.N77H	GTTTGTTGAGCGG	.	85	32	90	1	.	9	3	6	0	0
LRRC8D	55144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	90399406	90399406	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	LRRC8D-92	NM_018103	exon3	c.A779T	p.K260I	GCTTTAAATTTTC	.	44	16	33	0	.	20	10	10	0	0
DNTTIP2	30836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94342829	94342829	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	.	NM_014597	exon2	c.T662G	p.I221S	GGTACAATCTTAC	.	295	109	264	0	.	38	23	15	0	0
SASS6	163786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	100572514	100572514	+	Silent	SNP	A	A	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SASS6-70	NM_194292	exon12	c.T1362G	p.V454V	TTTTTTAACTGTA	.	38	11	37	0	.	2	0	2	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367739	145367739	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	.	NM_001039703	exon83	c.A10335G	p.K3445K	GGGGAAAAAAAGA	.	167	4	153	1	.	148	7	141	0	0
HORMAD1	84072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150679129	150679129	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	HORMAD1-92	NM_032132	exon10	c.A704T	p.N235I	TCAATATTTTCCA	.	226	86	209	0	.	0	0	0	0	0
DARC	2532	ucsc.edu;bcgsc.ca	37	1	159176128	159176128	+	Missense_Mutation	SNP	C	C	A	rs1801482		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	DARC-659	NM_001122951	exon1	c.C905A	p.T302K	TGGCTACGCCCCT	.	550	203	547	4	.	0	0	0	0	0
ARHGAP30	257106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161019045	161019045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ARHGAP30-25	NM_001025598	exon12	c.G1766A	p.C589Y	AGGGAACAGCAGC	.	212	52	203	1	.	0	0	0	0	0
CREG1	8804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	167515357	167515357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CREG1-186	NM_003851	exon3	c.T640C	p.Y214H	TATAATATTCTTC	.	67	29	66	0	.	125	68	57	0	0
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	185984290	185984290	+	Splice_Site	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	HMCN1-113	NM_031935	exon31	c.4631-1G>A	.	TTTGTAGTTCCAC	.	93	37	129	1	.	0	0	0	0	0
PLEKHA6	22874	broad.mit.edu;ucsc.edu	37	1	204199641	204199641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	PLEKHA6-654	NM_014935	exon18	c.T2483C	p.M828T	CGCCGCATTCGGT	.	9	3	15	0	.	15	12	3	0	0
ENTPD7	57089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101460770	101460770	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ENTPD7-91	NM_020354	exon11	c.T1376G	p.F459C	AGAGATTCAAGAA	.	272	93	407	0	.	18	11	7	0	0
OR56A5	390084	broad.mit.edu;ucsc.edu	37	11	5989644	5989644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	.	NM_001146033	exon1	c.G81T	p.Q27H	CCAGTGCTGCCAG	.	15	7	22	0	.	0	0	0	0	0
AGBL2	79841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	47711964	47711964	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	AGBL2-92	NM_024783	exon10	c.A1295C	p.N432T	ACGGTATTTCCTG	.	132	32	173	1	.	5	3	2	0	0
TMEM132A	54972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	60696113	60696113	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	TMEM132A-227	NM_178031	exon4	c.G547C	p.A183P	CTGGGCGCCTGCG	.	94	44	151	1	.	1	0	1	0	0
CCDC88B	283234	broad.mit.edu	37	11	64111815	64111815	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CCDC88B-94	NM_032251	exon14	c.C1802A	p.P601H	AGAGCCCTGCCTC	.	53	3	70	0	.	1	1	0	0	0
DPF2	5977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65113198	65113198	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	DPF2-91	NM_006268	exon7	c.G699A	p.L233L	CCACTTGGCTGAG	.	66	27	81	0	.	24	9	15	0	0
SPTBN2	6712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66468283	66468283	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SPTBN2-155	NM_006946	exon16	c.C3287A	p.T1096N	GGCAGGGTGGCCG	.	27	15	51	0	.	0	0	0	0	0
LRP5	4041	hgsc.bcm.edu	37	11	68125147	68125147	+	Missense_Mutation	SNP	C	C	G	rs80358306	byfrequency;alternate_allele	TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	LRP5-661	NM_002335	exon3	c.C518G	p.T173R	GTGAGACGCCCCG	.	36	2	46	0	C|0.999;T|0.001	5	5	0	0	0
RSF1	51773	ucsc.edu	37	11	77412780	77412780	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	RSF1-93	NM_016578	exon6	c.A1494G	p.K498K	ACCTGTTTTCATA	.	256	2	308	0	.	8	8	0	0	0
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82877600	82877600	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	PCF11-23	NM_015885	exon5	c.A1661G	p.D554G	TTCGGGATCCAAG	.	73	19	81	0	.	6	5	1	0	0
SNX19	399979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	130785820	130785820	+	Silent	SNP	T	T	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SNX19-229	NM_014758	exon1	c.A15T	p.T5T	TGGCACTGTTTCT	.	29	13	56	0	.	6	2	4	0	0
ATN1	1822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7045767	7045767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ATN1-139	NM_001007026	exon5	c.C1337A	p.P446H	CACCTCCTCCCTA	.	366	144	377	0	.	25	12	13	0	0
AEBP2	121536	hgsc.bcm.edu	37	12	19665400	19665400	+	Splice_Site	SNP	G	G	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	AEBP2-23	NM_153207	exon6	c.1367+1G>C	.	AGACATGTAAGTA	.	16	2	10	0	.	0	0	0	0	0
NAB2	4665	hgsc.bcm.edu	37	12	57487273	57487273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	NAB2-92	NM_005967	exon6	c.A1360G	p.I454V	CGACACATCCTGC	.	13	6	12	0	.	10	8	2	0	0
PITPNM2	57605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	123479959	123479959	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	PITPNM2-228	NM_020845	exon13	c.G2031A	p.Q677Q	GTGCTGCTGGATG	.	150	43	104	0	.	3	1	2	0	0
PYGL	5836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	51387749	51387749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	PYGL-91	NM_002863	exon6	c.G697A	p.G233S	TGTAGCCGGGCAC	.	71	42	103	1	.	3	1	2	0	0
TTC7B	145567	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	91161893	91161893	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	TTC7B-92	NM_001010854	exon6	c.G728C	p.R243T	AGCTCTCTAAATC	.	42	23	64	0	.	3	0	3	0	0
TYRO3	7301	hgsc.bcm.edu	37	15	41854918	41854918	+	Splice_Site	SNP	T	T	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	TYRO3-1388	NM_006293	exon4	c.580+2T>G	.	AACAGGTGAGCAG	.	31	8	23	0	.	0	0	0	0	0
MAPKBP1	23005	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42105966	42105966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	MAPKBP1-589	NM_001128608	exon10	c.G985A	p.V329I	GCTAGCGTCACCG	.	153	42	180	0	.	0	0	0	0	0
AP4E1	23431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	51289917	51289917	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	AP4E1-90	NM_007347	exon18	c.T2741A	p.I914K	AATACATACACTC	.	146	65	117	0	.	1	0	1	0	0
PIAS1	8554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	68479999	68479999	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	PIAS1-637	NM_016166	exon14	c.T1782C	p.S594S	GTTAAGTGCAGGA	.	77	34	66	0	.	8	3	5	0	0
ZNF688	146542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30581595	30581595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ZNF688-68	NM_145271	exon3	c.C473T	p.A158V	TCCCAGGCAGCAT	.	46	19	38	0	.	4	2	2	0	0
RPGRIP1L	23322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	53708941	53708941	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	RPGRIP1L-91	NM_001127897	exon7	c.T870G	p.I290M	AAGCTGAATAAAT	.	71	31	68	0	.	0	0	0	0	0
SLC16A13	201232	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	6942204	6942204	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SLC16A13-92	NM_201566	exon3	c.C1077G	p.L359L	TCCTCTCTCAGGT	.	198	13	172	1	.	0	0	0	0	0
CHRNB1	1140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7357711	7357711	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CHRNB1-92	NM_000747	exon8	c.C916G	p.P306A	TCAGTACCCATTA	.	214	60	183	0	.	0	0	0	0	0
SHBG	6462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7536218	7536218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SHBG-90	NM_001040	exon7	c.C1001A	p.A334D	GCCTGGCTCCCCT	.	73	35	79	1	.	0	0	0	0	0
ALOXE3	59344	broad.mit.edu	37	17	8018295	8018295	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ALOXE3-229	NM_001165960	exon5	c.C911T	p.A304V	GTCAAGGCAAATT	.	356	7	371	0	.	0	0	0	0	0
SLC6A4	6532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	28543164	28543164	+	Missense_Mutation	SNP	G	G	T	rs200924626		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SLC6A4-94	NM_001045	exon7	c.C908A	p.P303H	GCTCCAGGGAGGG	.	118	40	130	0	G|0.999;T|0.000	0	0	0	0	0
SPATA20	64847	broad.mit.edu	37	17	48627419	48627419	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SPATA20-90	NM_022827	exon8	c.G936A	p.M312I	GCAGATGGCCTTG	.	430	6	451	0	.	87	84	3	0	0
SNORA76	677842	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	62223780	62223780	+	RNA	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	.	.	.	.	.	GCATAACTGGGGC	.	196	71	171	0	.	0	0	0	0	0
HDHD2	84064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	44639349	44639349	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	HDHD2-90	NM_032124	exon6	c.T675A	p.T225T	CATACCAGTCTTT	.	86	28	72	0	.	1	0	1	0	0
GRIN3B	116444	bcgsc.ca	37	19	1004657	1004657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	GRIN3B-90	NM_138690	exon3	c.T1157C	p.V386A	CCACGGTGGGCAG	.	11	7	21	0	.	0	0	0	0	0
REXO1	57455	broad.mit.edu	37	19	1821535	1821535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	REXO1-90	NM_020695	exon5	c.C2377T	p.H793Y	GACTGTGGGCGAT	.	123	5	187	0	.	8	8	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9083127	9083127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	MUC16-566	NM_024690	exon1	c.G8688T	p.E2896D	TGGGACCTCAGAA	.	29	6	46	0	.	0	0	0	0	0
CACNA1A	773	broad.mit.edu	37	19	13338336	13338336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CACNA1A-67	NM_001127222	exon37	c.G5534A	p.R1845H	GGCATGCGGCCCC	.	56	3	91	1	.	0	0	0	0	0
SUGP2	10147	broad.mit.edu	37	19	19141834	19141834	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SUGP2-91	NM_014884	exon2	c.A47C	p.Q16P	TTTTCTTGTAATA	.	183	5	311	0	.	7	7	0	0	0
IRF2BP1	26145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46387423	46387423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	IRF2BP1-90	NM_015649	exon1	c.C1610T	p.A537V	CCCTGCGCCTTGA	.	67	7	73	0	.	1	1	0	0	0
SLC6A16	28968	broad.mit.edu	37	19	49793532	49793532	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SLC6A16-94	NM_014037	exon12	c.C2059A	p.P687T	TGAAGGGAATCCT	.	241	7	249	1	.	8	8	0	0	0
FAM71E1	112703	hgsc.bcm.edu;broad.mit.edu	37	19	50970929	50970929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	FAM71E1-44	NM_138411	exon4	c.C649T	p.R217C	GCAGGCGGTAGAG	.	11	4	14	0	.	2	1	1	0	0
ZFP28	140612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57066282	57066282	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ZFP28-91	NM_020828	exon8	c.T2128C	p.F710L	AAGGCCTTTGGTG	.	128	45	124	0	.	0	0	0	0	0
ZFP28	140612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57066298	57066298	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ZFP28-91	NM_020828	exon8	c.C2144A	p.S715Y	ACTCATCCTGTAC	.	130	45	129	0	.	0	0	0	0	0
ASAP2	8853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	9533671	9533671	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ASAP2-90	NM_003887	exon24	c.T2579C	p.L860S	AAGCCTTGAGCCA	.	19	6	27	0	.	8	8	0	0	0
NRBP1	29959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27664588	27664588	+	Missense_Mutation	SNP	G	G	A	rs141700147		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	NRBP1-334	NM_013392	exon18	c.G1517A	p.R506Q	AGAGCCGGTTGAC	.	334	127	314	1	G|1.000;A|0.000	62	27	35	0	0
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu	37	2	32693046	32693046	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	BIRC6-233	NM_016252	exon28	c.T5647C	p.Y1883H	CATACCTACATCT	.	34	3	43	0	.	10	10	0	0	0
SLC8A1	6546	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	40656328	40656328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SLC8A1-93	NM_001252624	exon1	c.C1093A	p.R365S	GAATGCGATAAAA	.	267	14	236	0	.	1	1	0	0	0
MSH6	2956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	48027125	48027125	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	MSH6-3014	NM_000179	exon4	c.C2003G	p.S668C	CTGATTCCATTGG	.	282	107	274	0	.	13	5	8	0	0
CCDC88A	55704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55566741	55566741	+	Silent	SNP	T	T	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CCDC88A-94	NM_018084	exon13	c.A1377C	p.S459S	TCTACTTGATGTC	.	95	29	105	1	.	3	2	1	0	0
TCF7L1	83439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	85536242	85536242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	TCF7L1-585	NM_031283	exon12	c.T1424C	p.M475T	GGAGCATGCTGGA	.	264	89	307	1	.	1	1	0	0	0
EIF5B	9669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	100015354	100015354	+	Silent	SNP	A	A	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	EIF5B-93	NM_015904	exon23	c.A3537C	p.T1179T	AGCTACAGATATT	.	86	33	81	0	.	109	63	46	0	0
CXCR4	7852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	136873381	136873381	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CXCR4-1082	NM_001008540	exon1	c.C129A	p.I43I	CAGGAAGATTTTA	.	163	61	145	1	.	15	14	1	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu	37	2	179585887	179585887	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	TTN-636	NM_001267550	exon79	c.C22859T	p.A7620V	TGCTTTGCAACTT	.	58	6	67	0	.	0	0	0	0	0
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	196749321	196749321	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	DNAH7-102	NM_018897	exon35	c.A5751G	p.Q1917Q	GACAAATTGATAA	.	106	33	83	0	.	0	0	0	0	0
GTF3C3	9330	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	197636546	197636546	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	GTF3C3-97	NM_012086	exon15	c.A2186C	p.N729T	TCTGGGTTTTTCA	.	114	5	96	0	.	32	25	7	0	0
ERBB4	2066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	212426810	212426810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ERBB4-1461	NM_001042599	exon20	c.G2305T	p.A769S	TCAGAGCTTCCTG	.	107	42	80	0	.	0	0	0	0	0
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	33329544	33329544	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	NCOA6-292	NM_014071	exon11	c.A4516G	p.K1506E	GGGGTTTAATTGT	.	107	43	132	0	.	10	2	8	0	0
KCNK15	60598	hgsc.bcm.edu	37	20	43379383	43379383	+	Missense_Mutation	SNP	C	C	G	rs199821276		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	KCNK15-90	NM_022358	exon2	c.C897G	p.C299W	GAGGTGCGCCCGC	.	2	2	2	1	.	11	3	8	0	0
SLC5A3	6526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	35468362	35468362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SLC5A3-92	NM_006933	exon2	c.G865A	p.A289T	CTTGCAGCCAAAA	.	190	80	217	0	.	2	2	0	0	0
ZBTB21	49854	broad.mit.edu	37	21	43412280	43412280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	.	NM_001098402	exon3	c.G1925A	p.G642D	GGCTTGCCGCGCC	.	137	4	126	0	.	5	5	0	0	0
POTEH	23784	hgsc.bcm.edu;bcgsc.ca	37	22	16287580	16287580	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	POTEH-1	NM_001136213	exon1	c.C306A	p.C102X	GTGGCAGCACCAC	.	417	167	1092	2	.	0	0	0	0	0
CENPM	79019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	42342456	42342456	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CENPM-90	NM_024053	exon2	c.G102C	p.S34S	GAGCATCGAGTCC	.	32	4	39	0	.	4	3	1	0	0
UBP1	7342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	33434887	33434887	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	UBP1-537	NM_014517	exon14	c.C1450G	p.L484V	ACACCAGCGCAAG	.	114	86	98	1	.	8	1	7	0	0
FBXO45	200933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	196304554	196304554	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	FBXO45-614	NM_001105573	exon2	c.A549T	p.Q183H	GTGCCAAGGTTAT	.	27	23	31	0	.	3	0	3	0	0
YTHDC1	91746	hgsc.bcm.edu	37	4	69202908	69202908	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	YTHDC1-92	NM_001031732	exon4	c.G720A	p.E240E	CTCCTCCTCTTCC	.	34	3	28	0	.	10	7	3	0	0
YTHDC1	91746	hgsc.bcm.edu	37	4	69202911	69202911	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	YTHDC1-92	NM_001031732	exon4	c.A717G	p.E239E	CTCCTCTTCCTCC	.	32	3	26	0	.	10	6	4	0	0
MFAP3L	9848	bcgsc.ca	37	4	170913237	170913237	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	MFAP3L-91	NM_021647	exon3	c.G522C	p.M174I	GCTCATCATGCAC	.	96	4	119	1	.	26	26	0	0	0
TRIO	7204	broad.mit.edu	37	5	14381318	14381318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	TRIO-562	NM_007118	exon21	c.A3527G	p.Q1176R	ACACCCAGGAGCT	.	119	6	90	0	.	9	9	0	0	0
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	16764479	16764479	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	MYO10-3	NM_012334	exon12	c.C1206A	p.A402A	AGCCATGGCCAGG	.	103	44	111	0	.	5	4	1	0	0
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	33561191	33561191	+	Missense_Mutation	SNP	G	G	C	rs183308563		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ADAMTS12-232	NM_030955	exon20	c.C4066G	p.P1356A	TTGCAGGGTCAGG	.	180	67	189	0	G|0.999;C|0.001	0	0	0	0	0
PARP8	79668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	50137860	50137860	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	PARP8-586	NM_001178055	exon27	c.A2523T	p.K841N	TCACAAAGAGATC	.	101	43	112	0	.	18	9	9	0	0
VCAN	1462	broad.mit.edu	37	5	82835856	82835856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	VCAN-238	NM_004385	exon8	c.C7034A	p.T2345K	GACCCACGGTGGC	.	104	3	86	0	.	2	2	0	0	0
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	89989974	89989974	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	GPR98-103	NM_032119	exon33	c.A7401T	p.T2467T	GATGACATCATGG	.	51	23	52	0	.	0	0	0	0	0
PCDHGC4	56098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140865325	140865325	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	PCDHGC4-72	NM_018928	exon1	c.C585G	p.L195L	GCTGCTCCTGGAG	.	78	26	61	1	.	0	0	0	0	0
RANBP9	10048	broad.mit.edu;bcgsc.ca	37	6	13622632	13622632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	RANBP9-414	NM_005493	exon14	c.T2152C	p.S718P	CGCAGGATCCAAT	.	113	5	88	0	.	31	31	0	0	0
PBX2	5089	ucsc.edu	37	6	32155509	32155509	+	Missense_Mutation	SNP	T	T	A	rs202223627		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	PBX2-91	NM_002586	exon5	c.A785T	p.Y262F	TAGAAATACTCAT	.	27	5	25	0	T|0.999;A|0.001	63	63	0	0	0
CRIP3	401262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43275360	43275360	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CRIP3-91	NM_206922	exon4	c.A318G	p.Q106Q	CTTGCCTTGGGGG	.	121	46	99	0	.	0	0	0	0	0
OGFRL1	79627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	72011098	72011098	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	OGFRL1-68	NM_024576	exon7	c.C702A	p.H234Q	CCAGCACAACTAT	.	745	267	782	1	.	0	0	0	0	0
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152658075	152658075	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SYNE1-607	NM_182961	exon76	c.G12429C	p.W4143C	GTAAATCCAGAGC	.	73	22	106	0	.	7	2	5	0	0
RNF216	54476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	5781025	5781025	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	RNF216-274	NM_207111	exon4	c.T623C	p.L208P	GATAACAGCTCTG	.	350	117	328	1	.	20	6	14	0	0
POMZP3	22932	hgsc.bcm.edu	37	7	76241120	76241120	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	POMZP3-90	NM_012230	exon5	c.C356G	p.T119S	TGGCAGGTGATGT	.	55	5	67	0	.	0	0	0	0	0
CPA5	93979	broad.mit.edu	37	7	129987643	129987643	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CPA5-92	NM_080385	exon4	c.G153T	p.K51N	TGAGAAGCAGCTT	.	55	3	55	0	.	0	0	0	0	0
OR2A14	135941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143826220	143826220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	OR2A14-90	NM_001001659	exon1	c.G15T	p.K5N	CAACAAGACATGG	.	53	23	57	0	.	0	0	0	0	0
FGFR1	2260	broad.mit.edu	37	8	38314950	38314950	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	FGFR1-1793	NM_001174067	exon3	c.G114A	p.K38K	GAGGCACTTCCAG	.	72	4	77	2	.	42	36	6	0	0
LURAP1L	286343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	12821680	12821680	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	.	NM_203403	exon2	c.G608T	p.S203I	AATTCAGTGACAG	.	219	87	215	1	.	32	20	12	0	0
OBP2B	29989	hgsc.bcm.edu	37	9	136083879	136083879	+	Missense_Mutation	SNP	C	C	G	rs28584111		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	OBP2B-68	NM_014581	exon2	c.G183C	p.K61N	TTCCAACTTCCCA	.	50	3	59	1	.	0	0	0	0	0
ZXDB	158586	hgsc.bcm.edu	37	X	57618703	57618703	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	ZXDB-130	NM_007157	exon1	c.G222C	p.L74F	CCTGTTGGCGCCG	.	14	6	14	2	.	0	0	0	0	0
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	70643918	70643918	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	TAF1-900	NM_004606	exon31	c.4728+2T>C	.	GTAAGGTGAGTGA	.	65	49	73	0	.	0	0	0	0	0
RLIM	51132	hgsc.bcm.edu	37	X	73811737	73811737	+	Silent	SNP	T	T	A	rs113198776		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	RLIM-228	NM_183353	exon5	c.A1413T	p.S471S	GGAACTTGAACTG	.	40	3	38	1	.	46	18	0	28	0
RLIM	51132	hgsc.bcm.edu	37	X	73811739	73811739	+	Missense_Mutation	SNP	A	A	G	rs201164156		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	RLIM-228	NM_183353	exon5	c.T1411C	p.S471P	AACTTGAACTGGA	.	40	3	36	1	.	21	21	0	0	0
TENM1	10178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	123518587	123518587	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	.	NM_001163278	exon30	c.C6194G	p.T2065S	AAAGGGGTTTCAT	.	97	81	117	0	.	0	0	0	0	0
CXorf48	54967	hgsc.bcm.edu	37	X	134303602	134303602	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	CXorf48-130	NM_017863	exon2	c.T195C	p.T65T	GTTGCCAGTCACA	.	36	2	41	0	.	0	0	0	0	0
RAB13	5872	hgsc.bcm.edu	37	1	153954883	153954921	+	Frame_Shift_Del	DEL	GACTTGAGCAAGATGTCCCGGGCCAGGGAACTAAAAGCC	GACTTGAGCAAGATGTCCCGGGCCAGGGAACTAAAAGCC	-	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	GACTTGAGCAAGATGTCCCGGGCCAGGGAACTAAAAGCC	GACTTGAGCAAGATGTCCCGGGCCAGGGAACTAAAAGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	RAB13-227	NM_002870	exon7	c.481_518del	p.161_173del	.	.	149	30	245	0	.	0	0	0	0	0
OTOGL	283310	broad.mit.edu	37	12	80726809	80726813	+	Frame_Shift_Del	DEL	ACATC	ACATC	-	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	ACATC	ACATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	.	NM_173591	exon37	c.4346_4350del	p.1449_1450del	CATCAGACATCAC	.	26	7	14	0	.	0	0	0	0	0
BIVM-ERCC5	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	103510748	103510748	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	.	NM_001204425	exon14	c.2014delT	p.L672fs	.	.	144	51	132	0	.	0	0	0	0	0
WDR33	55339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	128484249	128484249	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	WDR33-90	NM_018383	exon8	c.827delA	p.K276fs	.	.	136	38	130	0	.	0	0	0	0	0
SMARCB1	6598	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	24167461	24167461	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SMARCB1-2699	NM_003073	exon7	c.845delA	p.D282fs	.	.	75	57	92	0	.	0	0	0	0	0
POLQ	10721	broad.mit.edu	37	3	121207671	121207673	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	POLQ-664	NM_199420	exon16	c.4105_4107del	p.1369_1369del	ACACTCCTTCTGA	.	267	13	226	0	.	0	0	0	0	0
SPEF2	79925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	35771741	35771743	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SPEF2-26	NM_024867	exon27	c.3832_3834del	p.1278_1278del	.	.	58	12	54	0	.	0	0	0	0	0
IFNA2	3440	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	21385064	21385067	+	Frame_Shift_Del	DEL	GATT	GATT	-	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	GATT	GATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	IFNA2-153	NM_000605	exon1	c.262_265del	p.88_89del	.	.	215	87	216	0	.	0	0	0	0	0
DIDO1	11083	broad.mit.edu	37	20	61537401	61537402	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	DIDO1-96	NM_080796	exon6	c.1426_1427insA	p.E476fs	TGGTCTCTTTTTT	.	202	0	215	0	.	0	0	0	0	0
SETD2	29072	hgsc.bcm.edu;bcgsc.ca	37	3	47125642	47125643	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	SETD2-1273	NM_014159	exon12	c.5628_5629insT	p.L1876fs	.	.	334	75	288	0	.	0	0	0	0	0
TRIM41	90933	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	180661231	180661232	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BQ-5876-01A-11D-1589-08	TCGA-BQ-5876-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ffc588e2-0513-4495-b578-d028131a1dc3	a1a3e47d-ca70-49d5-8599-c60c433343f0	.	TRIM41-226	NM_201627	exon6	c.1349_1350insC	p.R450fs	.	.	104	38	121	0	.	0	0	0	0	0