Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ZBTB8OS	339487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	33099257	33099257	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ZBTB8OS-90	NM_178547	exon4	c.T352G	p.F118V	GTATGAAGAATTC	.	70	40	104	0	.	0	0	0	0	0
RLF	6018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	40701983	40701983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	RLF-93	NM_012421	exon8	c.G1609A	p.D537N	AAAAGAGACAAAA	.	101	34	147	0	.	1	0	1	0	0
TMEM53	79639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	45120714	45120714	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	TMEM53-92	NM_024587	exon3	c.C351A	p.V117V	CAGCATGACGCCA	.	46	26	82	0	.	18	2	16	0	0
DAP3	7818	hgsc.bcm.edu;bcgsc.ca	37	1	155695186	155695186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	DAP3-228	NM_033657	exon5	c.G284A	p.S95N	CATTCAGTGAAGC	.	182	66	165	0	.	91	91	0	0	0
TIPRL	261726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	168168189	168168189	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	TIPRL-91	NM_152902	exon6	c.G645A	p.T215T	ATATACGTCACGA	.	51	11	40	0	.	53	28	24	0	0
RFWD2	64326	hgsc.bcm.edu	37	1	175914297	175914297	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	RFWD2-659	NM_022457	exon20	c.T2188C	p.L730L	ATACCAATTCTAG	.	77	4	52	0	.	0	0	0	0	0
KLHDC8A	55220	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	205312513	205312513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	KLHDC8A-91	NM_018203	exon2	c.G220A	p.V74I	CGGTGACGGCCAC	.	174	52	172	0	.	0	0	0	0	0
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	24508666	24508666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	KIAA1217-98	NM_019590	exon2	c.G182T	p.R61L	CTTCCCGCAATAT	.	106	25	81	0	.	4	3	1	0	0
EPC1	80314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	32580239	32580239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	EPC1-93	NM_025209	exon6	c.G827C	p.G276A	TAGTCGCCCAAAT	.	176	31	102	0	.	0	0	0	0	0
OSBPL5	114879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	3141834	3141834	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	OSBPL5-113	NM_020896	exon6	c.C423G	p.S141R	GGTCCAGCTCTTC	.	64	36	94	0	.	6	5	1	0	0
OR8H3	390152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55890629	55890629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	OR8H3-70	NM_001005201	exon1	c.A781G	p.K261E	TACTTAAAGCCAA	.	121	58	168	0	.	0	0	0	0	0
CADM1	23705	hgsc.bcm.edu;broad.mit.edu	37	11	115080343	115080343	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	CADM1-92	NM_014333	exon8	c.C1029A	p.T343T	GGTGGTGGTTGTT	.	48	4	43	0	.	22	22	0	0	0
IFLTD1	160492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	25702289	25702289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	IFLTD1-92	NM_001145728	exon3	c.G281T	p.G94V	CAGCTACCTACAG	.	70	19	78	0	.	0	0	0	0	0
ALG10B	144245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	38714192	38714192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ALG10B-93	NM_001013620	exon3	c.T599C	p.V200A	GGAATGTCATTGC	.	442	140	418	0	.	10	3	7	0	0
MLL2	8085	hgsc.bcm.edu	37	12	49427714	49427714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	MLL2-612	NM_003482	exon39	c.A10774G	p.M3592V	CTGCCATGAGATT	.	9	5	0	0	.	15	5	10	0	0
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	120582190	120582190	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	GCN1L1-94	NM_006836	exon42	c.C5415A	p.I1805I	CATGGAGATAACC	.	93	29	75	0	.	57	38	19	0	0
HPD	3242	broad.mit.edu	37	12	122292680	122292680	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	HPD-90	NM_002150	exon7	c.G343A	p.A115T	TTTTGGCGCCCCG	.	114	4	119	0	.	0	0	0	0	0
ATP12A	479	bcgsc.ca	37	13	25265156	25265156	+	Missense_Mutation	SNP	G	G	A	rs142075922		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ATP12A-137	NM_001185085	exon8	c.G854A	p.R285H	GTGACCGCACCAT	.	96	5	132	0	G|1.000;A|0.000	0	0	0	0	0
PROSER1	80209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	39596542	39596542	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	.	NM_025138	exon9	c.T651A	p.Y217X	ATTGTTATAAGCA	.	145	72	139	0	.	0	0	0	0	0
TRIM9	114088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	51475908	51475908	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	TRIM9-227	NM_052978	exon5	c.A1196G	p.Q399R	CCCCACTGATCCT	.	149	49	105	0	.	9	4	5	0	0
SPTLC2	9517	broad.mit.edu	37	14	77984506	77984506	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	SPTLC2-92	NM_004863	exon11	c.T1444A	p.F482I	GTCCAAAGGCGCT	.	71	3	60	0	.	1	1	0	0	0
AHNAK2	113146	broad.mit.edu	37	14	105413526	105413526	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	AHNAK2-47	NM_138420	exon7	c.G8262T	p.K2754N	GGGGCCCTTAACA	.	374	5	308	1	.	29	29	0	0	0
USP50	373509	broad.mit.edu	37	15	50835960	50835960	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	USP50-658	NM_203494	exon3	c.C279T	p.A93A	CAGATAGGCAAAA	.	12	2	14	0	.	0	0	0	0	0
CLN6	54982	broad.mit.edu	37	15	68510982	68510982	+	Silent	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	CLN6-91	NM_017882	exon2	c.C90A	p.G30G	CACAGAGCCATGC	.	87	7	71	1	.	0	0	0	0	0
ADAMTS7	11173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	79064138	79064138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ADAMTS7-226	NM_014272	exon15	c.C2165T	p.A722V	TCGCGTGCGCCCG	.	39	20	35	2	.	0	0	0	0	0
IL16	3603	broad.mit.edu	37	15	81598328	81598328	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	IL16-653	NM_001172128	exon17	c.G3500A	p.G1167D	TCAACGGCAAGTC	.	206	6	270	1	.	20	20	0	0	0
EARS2	124454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23540828	23540828	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	EARS2-90	NM_001083614	exon7	c.G1347A	p.V449V	CCCCAGCACACGC	.	46	13	47	0	.	0	0	0	0	0
STX4	6810	broad.mit.edu	37	16	31050905	31050905	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	STX4-90	NM_004604	exon9	c.C746T	p.A249V	GCTCAGCGGACTA	.	159	5	148	0	.	258	256	0	0	2
ZNF646	9726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31089679	31089679	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ZNF646-153	NM_014699	exon2	c.T2034C	p.A678A	GCGGGCTGGCGGT	.	89	33	74	2	.	8	6	2	0	0
GSE1	23199	hgsc.bcm.edu	37	16	85690000	85690000	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	.	NM_014615	exon7	c.C1041T	p.R347R	CGAGCGCGAGCGT	.	22	7	19	1	.	0	0	0	0	0
RNF166	115992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	88765421	88765421	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	RNF166-226	NM_178841	exon4	c.G498T	p.V166V	GTGCTTCACCAGC	.	14	8	14	0	.	39	24	15	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	605	89	527	67	.	88	8	80	0	0
MED1	5469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37579984	37579984	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	MED1-620	NM_004774	exon12	c.T942A	p.S314S	TGCTCTAGATACT	.	123	49	108	1	.	18	10	8	0	0
UNC13D	201294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73837041	73837041	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	UNC13D-92	NM_199242	exon7	c.T611A	p.M204K	CACCACATGTCCA	.	474	146	451	0	.	0	0	0	0	0
QRICH2	84074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74288035	74288035	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	QRICH2-94	NM_032134	exon4	c.C2275T	p.Q759X	CTGCCTGAGGTTG	.	219	74	223	0	.	2	0	2	0	0
TAF4B	6875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	23865865	23865865	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	TAF4B-71	NM_005640	exon7	c.G992A	p.R331Q	CCTTACGACAACT	.	197	104	234	0	.	7	1	6	0	0
SERPINB5	5268	hgsc.bcm.edu	37	18	61170566	61170566	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	SERPINB5-651	NM_002639	exon7	c.G739C	p.E247Q	CAGATTGAAAAAC	.	37	2	36	0	.	0	0	0	0	0
LPPR3	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	814747	814747	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	.	NM_001270366	exon6	c.A602G	p.K201R	AAGGTCTTCCTGT	.	36	11	34	0	.	0	0	0	0	0
ARID3A	1820	bcgsc.ca	37	19	972016	972016	+	Missense_Mutation	SNP	C	C	T	rs150609955		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ARID3A-90	NM_005224	exon9	c.C1733T	p.A578V	GGCCAGCGGGGCT	.	24	4	25	0	C|1.000;T|0.000	5	5	0	0	0
ABCA7	10347	broad.mit.edu	37	19	1062275	1062275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ABCA7-98	NM_019112	exon42	c.C5675T	p.A1892V	TGCTTGCGCGCCT	.	304	5	276	0	.	6	6	0	0	0
JSRP1	126306	hgsc.bcm.edu	37	19	2253780	2253780	+	Missense_Mutation	SNP	A	A	G	rs10426549		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	JSRP1-91	NM_144616	exon5	c.T275C	p.V92A	GCGGGGACGCTCC	.	2	2	0	0	A|0.832;G|0.168	0	0	0	0	0
ZNF607	84775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38190209	38190209	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ZNF607-90	NM_032689	exon5	c.C823A	p.H275N	CAGTATGAATACT	.	119	49	103	0	.	0	0	0	0	0
SIPA1L3	23094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38621370	38621370	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	SIPA1L3-91	NM_015073	exon10	c.A3101C	p.K1034T	CTGTGAAGGTGGT	.	92	28	87	0	.	20	6	14	0	0
ZNF780B	163131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40540344	40540344	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ZNF780B-47	NM_001005851	exon5	c.C2422T	p.P808S	TCAAAGGGTTTCT	.	100	38	63	0	.	3	3	0	0	0
CLPTM1	1209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45495628	45495628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	CLPTM1-91	NM_001294	exon13	c.G1693A	p.V565I	ATGCCCGTTATGT	.	261	100	282	0	.	454	231	222	0	0
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55493701	55493701	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	NLRP2-120	NM_017852	exon6	c.A635T	p.Y212F	TGCTGTATGGTCC	.	135	53	113	0	.	0	0	0	0	0
GPR113	165082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	26534291	26534291	+	Missense_Mutation	SNP	C	C	A	rs199709313		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	GPR113-94	NM_001145168	exon11	c.G2305T	p.A769S	CCAGAGCGGGTTC	.	132	8	130	0	C|1.000;A|0.000	1	1	0	0	0
HEATR5B	54497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	37267620	37267620	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	HEATR5B-142	NM_019024	exon20	c.T2898A	p.S966R	CGGACCACTAGAA	.	125	38	120	0	.	16	8	8	0	0
UGGT1	56886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	128918714	128918714	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	UGGT1-91	NM_020120	exon25	c.C2697A	p.I899I	ACAGATCATTGGG	.	139	45	135	0	.	0	0	0	0	0
MGAT5	4249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	135206357	135206357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	MGAT5-93	NM_002410	exon16	c.G2165A	p.R722K	ACCAGAGGGTCTG	.	113	36	100	0	.	7	4	3	0	0
FMNL2	114793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	153471511	153471511	+	Silent	SNP	T	T	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	FMNL2-516	NM_052905	exon12	c.T1209A	p.S403S	CATTTCTCATGTA	.	106	38	61	0	.	0	0	0	0	0
GPD2	2820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	157367411	157367411	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	GPD2-91	NM_001083112	exon4	c.C378T	p.I126I	GGCCATCATGAAG	.	277	76	256	0	.	13	5	7	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179575504	179575504	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	TTN-636	NM_001267550	exon98	c.C28320T	p.G9440G	CTTTCCGCCACTT	.	182	52	144	2	.	0	0	0	0	0
CTLA4	1493	broad.mit.edu	37	2	204735458	204735458	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	CTLA4-90	NM_005214	exon2	c.G259A	p.A87T	TGTGCGGCAACCT	.	123	4	105	0	.	1	1	0	0	0
ACADL	33	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	211081192	211081192	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ACADL-90	NM_001608	exon4	c.G415A	p.G139S	CAATACCTGAATG	.	112	44	105	0	.	33	8	23	0	0
DGKD	8527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234363455	234363455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	DGKD-676	NM_152879	exon19	c.G2311T	p.G771C	GGCATTGGCCTGG	.	148	41	124	0	.	41	10	31	0	0
UGT1A7	54577	broad.mit.edu	37	2	234590864	234590864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	UGT1A7-26	NM_019077	exon1	c.C281T	p.A94V	TTTTTGCCGATGC	.	285	5	196	0	.	2	2	0	0	0
FRG1B	284802	broad.mit.edu	37	20	29628236	29628236	+	RNA	SNP	G	G	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	FRG1B-22	.	.	.	.	AAAATGGCTTTGT	.	216	5	198	0	.	0	0	0	0	0
AHCY	191	ucsc.edu	37	20	32880315	32880315	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	AHCY-91	NM_001161766	exon5	c.212-2A>G	.	ATACACTGGAGGG	.	137	1	88	0	.	2	2	0	0	0
RPL3	6122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	39714484	39714484	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	RPL3-154	NM_001033853	exon2	c.G117T	p.K39N	GACCGGCTTGGAC	.	55	13	68	0	.	2108	158	1940	0	2
SATB1	6304	broad.mit.edu;ucsc.edu	37	3	18391172	18391172	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	SATB1-228	NM_001195470	exon12	c.A1878T	p.Q626H	CTGCTGTTGCTGC	.	15	5	20	0	.	0	0	0	0	0
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	42793447	42793447	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	CCDC13-91	NM_144719	exon5	c.A584C	p.Q195P	CCCATCTGGGCCC	.	94	33	135	0	.	0	0	0	0	0
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52544437	52544437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	STAB1-139	NM_015136	exon25	c.G2701A	p.V901I	GGCCGCGTCTGTG	.	70	37	119	0	.	4	4	0	0	0
EPHB1	2047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	134670526	134670526	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	EPHB1-1492	NM_004441	exon3	c.T437A	p.F146Y	AGAGCTTCTCCCA	.	222	112	273	0	.	1	0	1	0	0
RBP2	5948	broad.mit.edu	37	3	139195248	139195248	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	RBP2-91	NM_004164	exon1	c.G54T	p.E18D	GTAGCCCTCAAAG	.	83	4	111	1	.	0	0	0	0	0
MED12L	116931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	151078359	151078359	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	MED12L-576	NM_053002	exon19	c.A2818G	p.S940G	TCATGTAGCCACC	.	239	125	280	0	.	0	0	0	0	0
NAF1	92345	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	164050121	164050121	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	NAF1-70	NM_138386	exon8	c.C1413T	p.P471P	GGGAGGGGGTGGG	.	22	16	26	0	.	2	0	2	0	0
TERT	7015	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	1255515	1255515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	TERT-1272	NM_198253	exon14	c.G3044T	p.C1015F	AGCACACATGCGT	.	51	14	49	0	.	0	0	0	0	0
CCNI2	645121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	132084160	132084160	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	CCNI2-68	NM_001039780	exon2	c.C551A	p.S184X	TGATTTCAGTGAA	.	163	47	122	0	.	0	0	0	0	0
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu	37	5	140563807	140563807	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	PCDHB16-92	NM_020957	exon1	c.C1673A	p.S558X	ACAACTCGCCCTT	.	98	33	86	0	.	80	80	0	0	0
OR5V1	81696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	29323498	29323498	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	OR5V1-72	NM_030876	exon1	c.C475G	p.H159D	CTGTATGCACCAC	.	67	37	104	0	.	0	0	0	0	0
C6orf222	389384	broad.mit.edu	37	6	36294406	36294406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	C6orf222-93	NM_001010903	exon5	c.C917A	p.S306Y	TCCTCGGAGCCGT	.	224	4	337	0	.	0	0	0	0	0
RIMS1	22999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	73108662	73108662	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	RIMS1-144	NM_014989	exon33	c.T4726G	p.Y1576D	GCTCCATATGTCA	.	39	15	57	0	.	0	0	0	0	0
ANLN	54443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	36445953	36445953	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ANLN-517	NM_018685	exon4	c.T651C	p.N217N	TGTAAATCACTCA	.	143	48	138	0	.	8	5	3	0	0
POM121	9883	hgsc.bcm.edu	37	7	72416149	72416149	+	Missense_Mutation	SNP	T	T	A	rs17406301		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	POM121-226	NM_172020	exon12	c.T2759A	p.L920Q	TTGGTCTGAACAC	.	65	4	72	2	.	96	41	55	0	0
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100681165	100681165	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	MUC17-95	NM_001040105	exon3	c.T6468C	p.Y2156Y	AACTTATAGTGAC	.	383	130	335	0	.	0	0	0	0	0
MLL5	55904	broad.mit.edu	37	7	104753240	104753240	+	Silent	SNP	A	A	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	MLL5-93	NM_018682	exon26	c.A5037C	p.P1679P	ACCCCCACCCCCA	.	29	8	23	2	.	14	13	1	0	0
MET	4233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116340025	116340025	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	MET-5874	NM_000245	exon2	c.T887C	p.L296P	TGCCTCTGGAGTG	.	199	57	191	0	.	55	30	25	0	0
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	121651531	121651531	+	Silent	SNP	C	C	T	rs143422308	alternate_allele	TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	PTPRZ1-699	NM_002851	exon12	c.C2431T	p.L811L	TCCATCCTGTCTT	.	398	114	344	0	C|1.000;G|0.000	0	0	0	0	0
WRN	7486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	30938567	30938567	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	WRN-1036	NM_000553	exon9	c.G1024A	p.V342I	ATTCACGTTGAAG	.	142	31	114	0	.	8	4	4	0	0
HTRA4	203100	broad.mit.edu;bcgsc.ca	37	8	38831823	38831823	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	HTRA4-90	NM_153692	exon1	c.G41A	p.C14Y	GACGATGCCTCCT	.	36	7	41	0	.	0	0	0	0	0
EMC2	9694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	109489022	109489022	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	.	NM_014673	exon9	c.C603T	p.T201T	GTATACCCAAGGT	.	85	27	67	0	.	1	1	0	0	0
FAM49B	51571	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	130883632	130883632	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	FAM49B-90	NM_016623	exon4	c.G184T	p.E62X	GTATTTCGTGGCC	.	153	56	122	0	.	0	0	0	0	0
PHF20L1	51105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	133816926	133816926	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	PHF20L1-92	NM_016018	exon8	c.G788C	p.R263T	ACAAGAGGAAAAA	.	164	48	128	0	.	41	25	16	0	0
CA9	768	broad.mit.edu;ucsc.edu	37	9	35676109	35676109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	CA9-95	NM_001216	exon4	c.G653T	p.R218L	CCGGGCGGGAGTA	.	34	4	46	0	.	12	12	0	0	0
FBXO10	26267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	37537307	37537307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	FBXO10-637	NM_012166	exon3	c.C1219A	p.L407M	AGTTCAGCACTAG	.	32	11	24	0	.	6	2	4	0	0
ASPN	54829	hgsc.bcm.edu	37	9	95237070	95237070	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	ASPN-514	NM_001193335	exon2	c.C110G	p.T37R	TCATCTGTGTCTT	.	52	4	44	1	.	1	1	0	0	0
OBP2B	29989	hgsc.bcm.edu	37	9	136083879	136083879	+	Missense_Mutation	SNP	C	C	G	rs28584111		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	OBP2B-68	NM_014581	exon2	c.G183C	p.K61N	TTCCAACTTCCCA	.	73	8	57	2	.	0	0	0	0	0
CAMSAP1	157922	broad.mit.edu	37	9	138714243	138714243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	CAMSAP1-92	NM_015447	exon11	c.A2264G	p.E755G	TGGGCCTCACCCA	.	97	3	96	0	.	23	23	0	0	0
YY2	404281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	21875588	21875588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	YY2-193	NM_206923	exon1	c.G986A	p.R329H	ATTTGCGCACACA	.	289	203	253	0	.	5	0	5	0	0
RBM17	84991	broad.mit.edu;bcgsc.ca	37	10	6157412	6157414	+	Splice_Site	DEL	TCA	TCA	-	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	TCA	TCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	RBM17-90	.	.	.	.	TGCCTTTCAGCGG	.	256	119	198	0	.	0	0	0	0	0
R3HDM2	22864	broad.mit.edu	37	12	57674205	57674207	+	In_Frame_Del	DEL	TGC	TGC	-	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	TGC	TGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	R3HDM2-92	NM_014925	exon12	c.1236_1238del	p.412_413del	GGAAGTTGCTGCT	.	111	6	72	0	.	0	0	0	0	0
IL25	64806	broad.mit.edu	37	14	23845057	23845058	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	IL25-91	NM_022789	exon2	c.502_503del	p.168_168del	TTAGCTTGTGTGT	.	185	7	166	0	.	0	0	0	0	0
RTL1	388015	broad.mit.edu;bcgsc.ca	37	14	101348358	101348358	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	RTL1-46	NM_001134888	exon1	c.2768delA	p.K923fs	AGAATCTTCATCT	.	53	17	38	0	.	0	0	0	0	0
WNT6	7475	broad.mit.edu	37	2	219724790	219724792	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	GCT	GCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	WNT6-564	NM_006522	exon1	c.30_32del	p.10_11del	CCTCGGGCTGCTG	.	9	3	8	0	.	0	0	0	0	0
TMEM60	85025	broad.mit.edu	37	7	77423460	77423460	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	TMEM60-90	NM_032936	exon2	c.231delA	p.K77fs	CCAGGCTTTTTTT	.	200	9	146	0	.	0	0	0	0	0
DAP3	7818	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	155695184	155695185	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	DAP3-228	NM_033657	exon5	c.282_283insA	p.F94fs	.	.	178	63	163	0	.	0	0	0	0	0
EFCAB6	64800	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	44107398	44107399	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	EFCAB6-97	NM_022785	exon10	c.988_989insT	p.V330fs	.	.	88	25	74	0	.	0	0	0	0	0
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	42793437	42793438	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-BQ-5882-01A-11D-1589-08	TCGA-BQ-5882-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f65963b3-cd4d-4c08-afc0-15bce361cd03	b04cfca5-40a2-4035-b650-45bc55651c71	.	CCDC13-91	NM_144719	exon5	c.594_595insGA	p.D198fs	.	.	83	25	124	0	.	0	0	0	0	0