Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
EMC1	23065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	19545821	19545821	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	.	NM_015047	exon23	c.G2958A	p.K986K	CAGGAGCTTCACC	.	75	4	75	0	.	80	69	11	0	0
MSH4	4438	broad.mit.edu	37	1	76282197	76282197	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	MSH4-660	NM_002440	exon6	c.A955C	p.N319H	GCCCAAAACCTTG	.	72	3	53	0	.	0	0	0	0	0
ZNF687	57592	bcgsc.ca	37	1	151260133	151260133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	ZNF687-92	NM_020832	exon2	c.G1366A	p.A456T	GGGCGGGCAGGGC	.	86	5	70	0	.	24	24	0	0	0
AQP10	89872	broad.mit.edu	37	1	154294468	154294468	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	AQP10-90	NM_080429	exon2	c.C165T	p.F55F	CAACTTCTTCACC	.	93	3	73	0	.	0	0	0	0	0
TDRD1	56165	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	115978231	115978231	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	TDRD1-90	NM_198795	exon18	c.A2382T	p.K794N	TGTTAAAGTACAT	.	195	13	196	0	.	0	0	0	0	0
MMP21	118856	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	127459092	127459092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	MMP21-228	NM_147191	exon5	c.G1048A	p.V350M	CCATCACCTCTCC	.	148	8	108	0	.	0	0	0	0	0
AP2A2	161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	984672	984672	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	AP2A2-90	NM_012305	exon7	c.C733T	p.Q245X	GATCTCCAGGATT	.	271	20	257	1	.	193	187	6	0	0
SYT9	143425	broad.mit.edu	37	11	7334870	7334870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	SYT9-155	NM_175733	exon3	c.C742T	p.P248S	AATTTGCCCGCCA	.	160	4	162	1	.	5	5	0	0	0
STX5	6811	bcgsc.ca	37	11	62592562	62592562	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	STX5-154	NM_003164	exon8	c.G625T	p.E209X	ACTGCTCTCTCCG	.	76	5	87	0	.	76	76	0	0	0
ARHGAP20	57569	broad.mit.edu	37	11	110450663	110450663	+	Missense_Mutation	SNP	C	C	T	rs202001398		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	ARHGAP20-230	NM_020809	exon16	c.G3007A	p.G1003S	AGGGACCGGGCAT	.	101	4	82	0	C|0.999;T|0.000	1	1	0	0	0
DCPS	28960	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	126201299	126201299	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	DCPS-90	NM_014026	exon3	c.377-1G>T	.	ATTGCAGATGTAA	.	200	12	191	0	.	1	1	0	0	0
PRDM10	56980	broad.mit.edu	37	11	129814751	129814751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	PRDM10-91	NM_020228	exon6	c.G677A	p.R226H	GGGATGCGCCGCT	.	114	4	127	0	.	1	1	0	0	0
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	rs121913529	bycluster	TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	KRAS-92875	NM_004985	exon2	c.G35A	p.G12D	ACGCCACCAGCTC	.	40	13	36	0	.	29	13	16	0	0
OR10AD1	121275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	48596939	48596939	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	OR10AD1-69	NM_001004134	exon1	c.T137C	p.I46T	ATAAAGATGATGA	.	53	5	45	0	.	0	0	0	0	0
ATP5B	506	ucsc.edu	37	12	57036240	57036240	+	Splice_Site	SNP	A	A	G	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	ATP5B-91	NM_001686	exon8	c.1074+2T>C	.	TTTCTTACCTGTA	.	95	1	79	0	.	0	0	0	0	0
STON2	85439	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	81862455	81862455	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	STON2-95	NM_001256430	exon4	c.G156C	p.E52D	ATGGTTCTCCCCG	.	82	7	90	0	.	4	4	0	0	0
MFAP1	4236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	44109600	44109600	+	Silent	SNP	T	T	G	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	MFAP1-226	NM_005926	exon2	c.A126C	p.G42G	CCTTTTTCCGGAC	.	214	12	184	0	.	58	53	5	0	0
AURKB	9212	broad.mit.edu	37	17	8108544	8108544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	AURKB-1508	NM_004217	exon8	c.G851A	p.R284H	ACGATGCGGCGAT	.	31	3	29	0	.	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	643	96	465	64	.	85	15	70	0	0
QRICH2	84074	hgsc.bcm.edu	37	17	74288532	74288532	+	Missense_Mutation	SNP	C	C	T	rs144028230		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	QRICH2-94	NM_032134	exon4	c.G1778A	p.R593H	AAACCACGCTGAT	.	68	6	74	2	C|1.000;T|0.000	1	0	1	0	0
QRICH2	84074	hgsc.bcm.edu	37	17	74288538	74288538	+	Missense_Mutation	SNP	T	T	A	rs142871405	alternate_allele	TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	QRICH2-94	NM_032134	exon4	c.A1772T	p.D591V	CGCTGATCTGCAC	.	73	5	70	1	T|1.000;C|0.000	0	0	0	0	0
RBBP8	5932	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	20573491	20573491	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	RBBP8-659	NM_203292	exon11	c.C1701G	p.C567W	TAAATGCTCTCCA	.	87	5	105	0	.	93	88	5	0	0
ACSBG2	81616	broad.mit.edu	37	19	6147661	6147661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	ACSBG2-23	NM_030924	exon3	c.G272A	p.R91Q	CTTGTCGGAAGGC	.	166	4	129	0	.	0	0	0	0	0
ZFP30	22835	broad.mit.edu	37	19	38126264	38126264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	ZFP30-90	NM_014898	exon6	c.G1178A	p.R393H	GAGTAACGACGAA	.	106	5	89	0	.	3	3	0	0	0
KIF3C	3797	broad.mit.edu;bcgsc.ca	37	2	26203576	26203576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	KIF3C-94	NM_002254	exon1	c.C1211T	p.P404L	CTCCGGGGCCGCT	.	109	5	116	0	.	6	6	0	0	0
VWA3B	200403	broad.mit.edu	37	2	98736133	98736133	+	Missense_Mutation	SNP	G	G	A	rs200875707	alternate_allele	TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	VWA3B-139	NM_144992	exon4	c.G449A	p.G150D	TTGGCGGCATTCT	.	388	7	319	0	G|0.999;C|0.001	0	0	0	0	0
SMPD4	55627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	130931124	130931124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	SMPD4-90	NM_017751	exon4	c.G349A	p.V117M	ACTCCACAGGATT	.	50	7	39	0	.	33	24	9	0	0
THSD7B	80731	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	137852688	137852688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	THSD7B-75	.	.	.	.	AATGTCCCAGGTA	.	70	7	60	0	.	0	0	0	0	0
PER2	8864	hgsc.bcm.edu	37	2	239162113	239162113	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	PER2-154	NM_022817	exon19	c.C2551G	p.P851A	CTGCTGGCACTGG	.	33	2	26	0	.	9	9	0	0	0
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	47632919	47632919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	ARFGEF2-358	NM_006420	exon31	c.G4282A	p.V1428I	TCTGATGTATTTG	.	147	43	132	0	.	51	21	30	0	0
CLIC6	54102	hgsc.bcm.edu	37	21	36042941	36042941	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	CLIC6-91	NM_053277	exon1	c.C1254T	p.A418A	CCTGGCCGAGGAG	.	12	8	5	2	.	5	0	5	0	0
MMP11	4320	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	24123480	24123480	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	MMP11-291	NM_005940	exon6	c.G959A	p.R320H	GCCTCCGTGGGGG	.	77	21	75	0	.	20	18	2	0	0
MEI1	150365	hgsc.bcm.edu	37	22	42189857	42189857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	MEI1-70	NM_152513	exon27	c.T3370C	p.C1124R	CAGGCCTGTGTTG	.	35	2	35	0	.	0	0	0	0	0
ENTPD3	956	hgsc.bcm.edu;broad.mit.edu	37	3	40465427	40465427	+	Silent	SNP	T	T	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	ENTPD3-91	NM_001248	exon10	c.T1326A	p.T442T	GGAGACTTGGCCC	.	179	9	141	0	.	1	1	0	0	0
LTF	4057	broad.mit.edu	37	3	46492033	46492033	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	LTF-703	NM_002343	exon7	c.T834C	p.S278S	ATTCACACTTCGT	.	77	5	47	0	.	63	57	6	0	0
ZIC4	84107	hgsc.bcm.edu	37	3	147109013	147109013	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	ZIC4-91	NM_001168378	exon4	c.G859T	p.E287X	CGAACTCGCATCT	.	39	2	37	0	.	0	0	0	0	0
IDUA	3425	hgsc.bcm.edu	37	4	980971	980971	+	Missense_Mutation	SNP	T	T	G	rs10794537		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	IDUA-91	NM_000203	exon1	c.T99G	p.H33Q	GGTGCATGTGGAC	.	2	2	0	0	T|0.175;G|0.825	11	0	11	0	0
CENPC1	1060	hgsc.bcm.edu	37	4	68338326	68338326	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	CENPC1-205	NM_001812	exon19	c.A2829T	p.R943S	CTTTCATCTTTTT	.	9	8	2	0	.	2	1	1	0	0
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	123264653	123264653	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	KIAA1109-80	NM_015312	exon71	c.C12441G	p.G4147G	ATCTGGCTTGAGC	.	91	7	111	0	.	27	25	2	0	0
TPPP	11076	hgsc.bcm.edu	37	5	678087	678087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	TPPP-90	NM_007030	exon2	c.G89A	p.R30K	GACAGCCTCTTGG	.	18	2	19	0	.	4	4	0	0	0
MAST4	375449	broad.mit.edu	37	5	66432487	66432487	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	MAST4-647	NM_001164664	exon19	c.G2489A	p.G830E	GGCTGGGAACAGG	.	16	3	8	0	.	0	0	0	0	0
GPR98	84059	broad.mit.edu	37	5	90136585	90136585	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	GPR98-103	NM_032119	exon78	c.A16802G	p.D5601G	TTTTTGACCCAAA	.	220	3	233	0	.	0	0	0	0	0
PCDHA9	9752	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140229899	140229899	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	PCDHA9-138	NM_031857	exon1	c.C1819T	p.L607F	GCGTGGCTTTCAT	.	110	9	82	0	.	1	1	0	0	0
MICB	4277	broad.mit.edu	37	6	31473399	31473399	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	MICB-90	NM_005931	exon2	c.C76T	p.H26Y	GAGCCCCACAGTC	.	88	3	90	0	.	0	0	0	0	0
SAMD9L	219285	broad.mit.edu;bcgsc.ca	37	7	92763422	92763422	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	SAMD9L-94	NM_152703	exon5	c.C1863T	p.I621I	TTTAAGGATAGTG	.	314	10	268	0	.	4	4	0	0	0
CFTR	1080	broad.mit.edu	37	7	117235098	117235098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	CFTR-518	NM_000492	exon15	c.A2605G	p.I869V	TTAGTAATTTTTC	.	133	4	102	0	.	25	21	4	0	0
SLC4A2	6522	hgsc.bcm.edu	37	7	150763663	150763663	+	Missense_Mutation	SNP	G	G	C	rs201747636		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	SLC4A2-90	NM_003040	exon6	c.G638C	p.G213A	CAGGGGGTGACGA	.	4	2	0	0	.	18	0	18	0	0
TMEM2	23670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	74300679	74300679	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	TMEM2-92	NM_013390	exon23	c.C3935G	p.P1312R	TGAGCTGGTTTGG	.	106	8	107	0	.	32	30	2	0	0
CORO2A	7464	broad.mit.edu	37	9	100899870	100899870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	CORO2A-230	NM_003389	exon3	c.G302T	p.C101F	TCAGAACAGGAGG	.	222	4	243	0	.	13	13	0	0	0
CNGA2	1260	broad.mit.edu	37	X	150911739	150911739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	CNGA2-193	NM_005140	exon7	c.G764A	p.R255H	TTGCCCGCATGTT	.	206	5	177	0	.	0	0	0	0	0
NLGN4Y	22829	hgsc.bcm.edu	37	Y	16952767	16952767	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	.	NM_014893	exon6	c.C2076T	p.A692A	CTTAGCCTTTGCG	.	5	5	0	0	.	0	0	0	0	0
CERS3	204219	broad.mit.edu;bcgsc.ca	37	15	101013174	101013174	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	.	NM_178842	exon10	c.693delG	p.G231fs	GAGGGTCCCACTG	.	124	17	140	0	.	0	0	0	0	0
CYB5D2	124936	bcgsc.ca	37	17	4058011	4058021	+	Frame_Shift_Del	DEL	CCCGGCACTGA	CCCGGCACTGA	-	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	CCCGGCACTGA	CCCGGCACTGA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	CYB5D2-155	NM_144611	exon3	c.435_445del	p.145_149del	GCCCACCCCGGCA	.	77	3	80	0	.	0	0	0	0	0
ADCY8	114	broad.mit.edu;bcgsc.ca	37	8	131916171	131916174	+	Frame_Shift_Del	DEL	TAAG	TAAG	-	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	TAAG	TAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	ADCY8-157	NM_001115	exon7	c.1755_1758del	p.585_586del	CTTAATTAAGTAA	.	205	22	207	0	.	0	0	0	0	0
XBP1	7494	broad.mit.edu	37	22	29196498	29196499	+	In_Frame_Ins	INS	-	-	GCC	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	XBP1-290	NM_001079539	exon1	c.15_16insGGC	p.A5delinsAA	CGCGGCTGCCACC	.	6	2	4	0	.	0	0	0	0	0
AR	367	hgsc.bcm.edu	37	X	66765195	66765196	+	Missense_Mutation	DNP	GC	GC	AG	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	AR		exon1	c.C208G	p.Q70E	CAGCAGCAGCAGC	.	19.0	4.0	17.0	0.0	.	0	0	0	0	0
CLCNKA	1187	ucsc.edu	37	1	16356252	16356253	+	Missense_Mutation	DNP	CA	CA	TG	novel		TCGA-BQ-5883-01A-11D-1589-08	TCGA-BQ-5883-11A-01D-1589-08	CA	CA	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	6c69acfc-a1cb-443f-b402-13ee50da93b7	517cb40d-9cef-49ff-a7ce-5b9c539c2b09	.	CLCNKA-91	NM_004070	exon13	c.A1255G	p.I419V	ACCACCATCCCCA	.	253	2	250	3	A|0.999;G|0.001	0	0	0	0	0