Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 JAK1 3716 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 65344759 65344759 + Missense_Mutation SNP C C T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . JAK1-3900 NM_002227 exon4 c.G278A p.R93H ATGGTGCGATTTG . 45 25 53 0 . 137 95 42 0 0 ARHGAP29 9411 bcgsc.ca 37 1 94696978 94696978 + Missense_Mutation SNP C C T rs200189126 TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . ARHGAP29-296 NM_004815 exon2 c.G190A p.E64K TGGCTTCTTTCAA . 74 18 90 1 . 21 21 0 0 0 SNX7 51375 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 99150445 99150445 + Missense_Mutation SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . SNX7-229 NM_015976 exon2 c.C185A p.A62D AGGATGCCTCATT . 104 37 105 0 . 0 0 0 0 0 ANKRD35 148741 bcgsc.ca 37 1 145560900 145560900 + Missense_Mutation SNP G G A rs202165652 TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . ANKRD35-95 NM_144698 exon9 c.G757A p.V253I AGGCTAGTCCAGC . 101 21 134 0 . 0 0 0 0 0 NTRK1 4914 broad.mit.edu 37 1 156837966 156837966 + Missense_Mutation SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . NTRK1-1393 NM_001012331 exon5 c.C499A p.L167M GAGGGACTGGGCG . 154 4 104 0 . 0 0 0 0 0 FCGR2A 2212 bcgsc.ca 37 1 161480669 161480669 + Missense_Mutation SNP T T G novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 T T - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . FCGR2A-91 NM_001136219 exon5 c.T665G p.V222G TGGCTGTGGTCAT . 260 35 238 1 . 2 2 0 0 0 PRRC2C 23215 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 1 171501662 171501662 + Silent SNP A A C rs14798 alternate_allele TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . . NM_015172 exon12 c.A1429C p.R477R GAACAAAGGAAGG . 14 14 21 1 A|1.000;T|0.000 128 8 119 0 1 SLC9C2 284525 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 173505010 173505010 + Missense_Mutation SNP G G T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . . NM_178527 exon15 c.C1734A p.F578L TTCCAAGAAAGTT . 113 29 77 0 . 0 0 0 0 0 PRG4 10216 broad.mit.edu 37 1 186276981 186276981 + Silent SNP A A G novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . PRG4-91 NM_005807 exon7 c.A2130G p.K710K CCCTAAAGGGACT . 230 5 166 0 . 0 0 0 0 0 PTGS2 5743 hgsc.bcm.edu 37 1 186649374 186649374 + Missense_Mutation SNP T T C rs199946406 TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . PTGS2-227 NM_000963 exon1 c.A49G p.T17A CACCTGTATGGCT . 6 6 6 1 . 0 0 0 0 0 AKT3 10000 hgsc.bcm.edu 37 1 243668589 243668589 + Missense_Mutation SNP A A G novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . AKT3-1423 NM_005465 exon13 c.T1402C p.F468L GAGGGAAATGCGG . 57 3 95 0 . 35 35 0 0 0 OR13G1 441933 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 247835611 247835611 + Missense_Mutation SNP C C G novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . OR13G1-69 NM_001005487 exon1 c.G733C p.V245L GGGTCACCACTGT . 122 32 122 0 . 0 0 0 0 0 PIP4K2A 5305 bcgsc.ca 37 10 22856802 22856802 + Missense_Mutation SNP C C T rs201266267 TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . PIP4K2A-665 NM_005028 exon6 c.G656A p.R219K GCTTCTCTAGCCA . 115 20 177 1 . 36 36 0 0 0 SVIL 6840 bcgsc.ca 37 10 29813511 29813511 + Missense_Mutation SNP A A G rs201719880 TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 A A - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . SVIL-96 NM_021738 exon14 c.T2476C p.S826P GCTGGGACAATTT . 138 32 157 8 . 30 30 0 0 0 OR13A1 79290 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 45799786 45799786 + Missense_Mutation SNP C C T rs200530280 alternate_allele TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . OR13A1-68 NM_001004297 exon4 c.G85A p.E29K TGAACTCGGTTAC . 84 38 95 0 C|0.999;A|0.001 0 0 0 0 0 AGAP9 642517 broad.mit.edu 37 10 47207813 47207813 + Missense_Mutation SNP T T C rs79933604 TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . . NM_001190810 exon4 c.A395G p.H132R CTTACATGGTTTG . 80 3 40 0 T|1.000;|0.000 0 0 0 0 0 ADAMTS14 140766 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 72517740 72517740 + Missense_Mutation SNP G G T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . ADAMTS14-232 NM_139155 exon20 c.G2969T p.G990V GAGAGGGCATCCA . 138 46 122 1 . 0 0 0 0 0 MUC2 4583 hgsc.bcm.edu 37 11 1092966 1092966 + Silent SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . MUC2-90 NM_002457 exon30 c.C4785A p.T1595T CCCAACCCCAACA . 30 5 2 0 . 0 0 0 0 0 LOC338651 0 broad.mit.edu 37 11 1619504 1619504 + RNA SNP G G T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . . . . . . GGTGGAGCAGGTA . 232 5 218 1 . 1 1 0 0 0 OR52N4 390072 bcgsc.ca 37 11 5776805 5776805 + Missense_Mutation SNP G G T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . OR52N4-2 NM_001005175 exon1 c.G835T p.V279L ATCATTGTAGCCA . 144 16 186 0 . 0 0 0 0 0 PPFIBP2 8495 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 7618800 7618800 + Missense_Mutation SNP C C G rs17851928 alternate_allele TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . PPFIBP2-273 NM_003621 exon5 c.C382G p.L128V AGTGTCCTCACAG . 19 9 33 0 . 0 0 0 0 0 TTC17 55761 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 43380551 43380551 + Missense_Mutation SNP G G A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . TTC17-95 NM_018259 exon1 c.G47A p.C16Y CGCCTTGCTCCGG . 20 10 25 0 . 2 1 1 0 0 PICALM 8301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 85714416 85714416 + Missense_Mutation SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . PICALM-659 NM_007166 exon9 c.G886T p.A296S TGCTTGCAGCTGT . 99 27 74 0 . 0 0 0 0 0 USP28 57646 broad.mit.edu 37 11 113679909 113679909 + Nonsense_Mutation SNP G G T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . USP28-706 NM_020886 exon17 c.C2040A p.Y680X CTGAATGTAATGC . 568 7 591 0 . 12 12 0 0 0 OR8G2 26492 broad.mit.edu 37 11 124095997 124095997 + Silent SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . . NM_001007249 exon1 c.C600A p.L200L GGGGCTCTCCTGC . 249 5 268 0 . 0 0 0 0 0 MLL2 8085 hgsc.bcm.edu 37 12 49427265 49427265 + Silent SNP T T C novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . MLL2-612 NM_003482 exon39 c.A11223G p.Q3741Q CTGCTGTTGCTGC . 24 2 34 0 . 25 7 18 0 0 LRP1 4035 broad.mit.edu 37 12 57566959 57566959 + Missense_Mutation SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . LRP1-596 NM_002332 exon21 c.C3172A p.P1058T ACGAGGCCCCCTG . 37 5 83 1 . 0 0 0 0 0 ZCCHC8 55596 bcgsc.ca 37 12 122958214 122958214 + Missense_Mutation SNP T T G novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 T T - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . ZCCHC8-90 NM_017612 exon14 c.A1954C p.T652P TGGCCGTTGAAGG . 208 29 313 2 . 36 36 0 0 0 SPATA13 221178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 24825881 24825881 + Missense_Mutation SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . SPATA13-229 NM_001166271 exon4 c.C2045A p.A682D TGCCTGCTCACCA . 118 49 117 0 . 4 3 1 0 0 SHISA2 387914 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 26620708 26620708 + Missense_Mutation SNP C C G novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . SHISA2-69 NM_001007538 exon2 c.G831C p.Q277H GGGGGACTGAATC . 85 30 87 0 . 1 1 0 0 0 TTBK2 146057 bcgsc.ca 37 15 43132600 43132600 + Missense_Mutation SNP A A C rs141523080 TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 A A - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . TTBK2-338 NM_173500 exon4 c.T249G p.C83W CCTCCCACAGCCA . 132 26 187 0 . 1 1 0 0 0 DENND4A 10260 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 65983020 65983020 + Silent SNP C C T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . DENND4A-229 NM_001144823 exon23 c.G3909A p.V1303V AAGTCTCACTGGC . 100 29 133 0 . 8 4 4 0 0 SIN3A 25942 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 75692465 75692465 + Silent SNP C C T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . SIN3A-230 NM_001145358 exon12 c.G1770A p.S590S AGACCACGAAGGG . 87 32 86 0 . 7 3 4 0 0 ZNF598 90850 hgsc.bcm.edu 37 16 2059674 2059674 + Missense_Mutation SNP T T C rs71384660 TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . ZNF598-432 NM_178167 exon2 c.A74G p.E25G CCGCCTTCCCGCT . 2 2 0 0 T|0.007;C|0.993 10 0 10 0 0 PKD1 5310 broad.mit.edu 37 16 2142592 2142592 + Missense_Mutation SNP A A C novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . PKD1-91 NM_001009944 exon39 c.T11158G p.S3720A CCTCAGACCTGCC . 27 11 38 6 . 5 4 1 0 0 NLRC3 197358 hgsc.bcm.edu 37 16 3613197 3613197 + Missense_Mutation SNP G G A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . NLRC3-96 NM_178844 exon5 c.C1741T p.R581C CGCTGCGGGCCAG . 17 14 19 2 . 0 0 0 0 0 CIITA 4261 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 10992850 10992850 + Missense_Mutation SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . CIITA-226 NM_000246 exon5 c.C427A p.Q143K AAAAGTCAGAAAA . 137 29 115 0 . 0 0 0 0 0 B3GNT9 84752 hgsc.bcm.edu 37 16 67184342 67184342 + Missense_Mutation SNP A A G novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . . NM_033309 exon2 c.T47C p.L16P CCAAGGAGCAGCG . 9 2 5 0 . 0 0 0 0 0 ANKRD11 29123 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 89349917 89349917 + Missense_Mutation SNP C C G novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . ANKRD11-139 NM_001256183 exon9 c.G3033C p.K1011N ATCCTTCTTCTCC . 122 69 187 0 . 12 2 10 0 0 TVP23C 201158 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA . 647 69 308 18 . 53 14 39 0 0 MYO15A 51168 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 18082124 18082124 + Missense_Mutation SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . MYO15A-97 NM_016239 exon65 c.C10533A p.N3511K GGAGAACCTGCTC . 100 55 80 1 . 0 0 0 0 0 ASIC2 40 hgsc.bcm.edu 37 17 31618997 31618997 + Missense_Mutation SNP C C A rs112647385 TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . . NM_183377 exon1 c.G137T p.R46L AGCGCCCGCTCGC . 5 5 0 0 C|0.740;A|0.260 0 0 0 0 0 KIAA1468 57614 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 59888685 59888685 + Silent SNP C C T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . KIAA1468-158 NM_020854 exon5 c.C813T p.N271N GAATAACTATAAG . 98 28 68 0 . 1 0 1 0 0 RHPN2 85415 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 33503622 33503622 + Missense_Mutation SNP G G C novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . RHPN2-516 NM_033103 exon5 c.C399G p.I133M TTCCAGGATAAAA . 54 24 50 0 . 0 0 0 0 0 KIAA0355 9710 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 34832921 34832921 + Silent SNP G G A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . KIAA0355-91 NM_014686 exon10 c.G2082A p.L694L GTCACTGCCTGTG . 111 35 133 0 . 9 9 0 0 0 IGFLR1 79713 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 36230750 36230750 + Silent SNP G G C novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . IGFLR1-90 NM_024660 exon4 c.C582G p.A194A GGGGTCGGCTTTC . 159 66 197 0 . 1 0 1 0 0 CNFN 84518 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 42893120 42893120 + Missense_Mutation SNP A A G novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . CNFN-90 NM_032488 exon2 c.T70C p.W24R TGTGCCAGTCACT . 37 22 50 0 . 1 1 0 0 0 ZNF285 26974 bcgsc.ca 37 19 44896602 44896602 + Missense_Mutation SNP A A C novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 A A - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . ZNF285-94 NM_152354 exon3 c.T44G p.V15G AAGACAACAGCCA . 102 19 151 0 . 1 1 0 0 0 DMPK 1760 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 46280763 46280763 + Missense_Mutation SNP G G A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . DMPK-546 NM_001081563 exon7 c.C998T p.T333I AGCCGTGTCTCCG . 76 31 82 0 . 67 27 40 0 0 VN1R2 317701 broad.mit.edu 37 19 53762720 53762720 + Silent SNP T T C novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . VN1R2-90 NM_173856 exon1 c.T1092C p.P364P TAGCCCTTTTGTT . 240 3 217 1 . 0 0 0 0 0 PRKCG 5582 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 54385815 54385815 + Missense_Mutation SNP G G T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . PRKCG-1367 NM_002739 exon1 c.G67T p.G23W AGAAAGGGGGCCC . 156 72 175 0 . 0 0 0 0 0 KIR3DL3 115653 hgsc.bcm.edu 37 19 55239373 55239373 + Missense_Mutation SNP G G A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . KIR3DL3-46 NM_153443 exon4 c.G652A p.V218I GTGGTCGTAGGTG . 146 65 181 0 . 0 0 0 0 0 CEP250 11190 bcgsc.ca 37 20 34092577 34092577 + Missense_Mutation SNP A A C rs200640167 TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 A A - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . CEP250-27 NM_007186 exon30 c.A6380C p.H2127P TACCCCACAGCCA . 117 22 149 0 . 11 11 0 0 0 SAMHD1 25939 hgsc.bcm.edu 37 20 35563508 35563508 + Missense_Mutation SNP G G C rs121434517 alternate_allele TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . SAMHD1-90 NM_015474 exon4 c.C433G p.R145G TGTATCGAAGACG . 73 4 114 0 . 34 34 0 0 0 PIK3CA 5290 hgsc.bcm.edu;broad.mit.edu 37 3 178936091 178936091 + Missense_Mutation SNP G G A rs104886003 bycluster TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . PIK3CA-27752 NM_006218 exon10 c.G1633A p.E545K ATCACTGAGCAGG . 68 4 92 0 . 12 12 0 0 0 ANXA3 306 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 79531260 79531260 + Silent SNP A A T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . ANXA3-90 NM_005139 exon13 c.A963T p.G321G TGGTGGAGATGAC . 78 39 94 1 . 111 71 40 0 0 GAB1 2549 hgsc.bcm.edu 37 4 144354854 144354854 + Missense_Mutation SNP A A G novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . GAB1-1146 NM_207123 exon3 c.A578G p.K193R GCAAGAAGCCCGA . 59 3 70 0 . 13 13 0 0 0 CCNB1 891 bcgsc.ca 37 5 68470159 68470159 + Missense_Mutation SNP G G A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . CCNB1-650 NM_031966 exon5 c.G628A p.V210I TGGCTAGTACAGG . 150 19 193 1 . 45 45 0 0 0 PCDHB2 56133 hgsc.bcm.edu 37 5 140476195 140476195 + Missense_Mutation SNP G G T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . PCDHB2-96 NM_018936 exon1 c.G1821T p.Q607H GTACCAGCTGCTC . 181 23 232 0 . 14 14 0 0 0 PCDHB3 56132 bcgsc.ca 37 5 140481333 140481333 + Missense_Mutation SNP T T G novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 T T - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . PCDHB3-92 NM_018937 exon1 c.T1100G p.V367G TGGCTGTTTTCAG . 105 23 110 0 . 1 1 0 0 0 PCDHB5 26167 broad.mit.edu 37 5 140517124 140517124 + Missense_Mutation SNP C C G novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . PCDHB5-95 NM_015669 exon1 c.C2108G p.S703W TCTTTTCGGTGCT . 211 6 311 0 . 8 8 0 0 0 LARS 51520 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 145533344 145533344 + Missense_Mutation SNP C C T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . LARS-90 NM_020117 exon12 c.G1183A p.D395N GGGAGTCGGAAGG . 67 31 35 0 . 49 23 26 0 0 GRPEL2 134266 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 148730749 148730749 + Silent SNP C C T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . GRPEL2-91 NM_152407 exon4 c.C582T p.T194T TGGCACCGTGGCA . 105 37 150 0 . 11 9 2 0 0 HLA-G 3135 ucsc.edu 37 6 29797247 29797247 + Silent SNP C C T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . HLA-G-517 NM_002127 exon5 c.C672T p.T224T GGCCACCCTGAGG . 288 1 158 0 . 0 0 0 0 0 CCDC28A 25901 bcgsc.ca 37 6 139106480 139106480 + Missense_Mutation SNP A A C rs77141562 TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 A A - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . CCDC28A-90 NM_015439 exon4 c.A709C p.T237P AGAAAAACAGCCA . 150 31 177 0 . 95 94 0 1 0 HIVEP2 3097 broad.mit.edu 37 6 143090729 143090729 + Missense_Mutation SNP C C T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . HIVEP2-95 NM_006734 exon5 c.G5147A p.G1716D AGCTTGCCGGTTC . 129 4 91 0 . 8 8 0 0 0 SAMD5 389432 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 147830100 147830100 + Silent SNP G G A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . SAMD5-68 NM_001030060 exon1 c.G36A p.A12A CAAAGCGCTGCAG . 55 12 73 0 . 4 1 3 0 0 AP5Z1 9907 hgsc.bcm.edu 37 7 4820940 4820940 + Missense_Mutation SNP G G A rs200423282 TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . . NM_014855 exon2 c.G176A p.R59Q ACAGCCGGAGGTG . 40 2 76 0 . 0 0 0 0 0 PKD1L1 168507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 47970797 47970797 + Missense_Mutation SNP G G A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . PKD1L1-145 NM_138295 exon6 c.C641T p.T214M TCCATCGTGACAG . 85 27 110 0 . 0 0 0 0 0 TPK1 27010 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 144245631 144245631 + Missense_Mutation SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . TPK1-188 NM_022445 exon8 c.G566T p.G189V GGCTGTCCAACAG . 145 65 172 0 . 11 8 3 0 0 ZNF767 79970 broad.mit.edu;bcgsc.ca 37 7 149318520 149318520 + RNA SNP G G T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . ZNF767-90 . . . . ACGGCTGTCTTCT . 125 57 194 0 . 11 8 3 0 0 MLL3 58508 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 151845739 151845739 + Missense_Mutation SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . MLL3-1398 NM_170606 exon52 c.G13273T p.D4425Y ACAGATCCAAGTC . 102 45 128 0 . 27 20 7 0 0 MYOM2 9172 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 2044224 2044224 + Missense_Mutation SNP A A G novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . MYOM2-95 NM_003970 exon18 c.A2263G p.K755E CACCATAAAAACT . 73 23 74 0 . 1 1 0 0 0 EBF2 64641 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 25766022 25766022 + Missense_Mutation SNP C C A rs200594181 TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . EBF2-26 NM_022659 exon7 c.G601T p.A201S TTCCTGCTGTTTT . 53 25 45 0 C|0.999;A|0.000 0 0 0 0 0 FAM110B 90362 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 59059734 59059734 + Silent SNP C C T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . FAM110B-153 NM_147189 exon5 c.C945T p.S315S GATCAGCTCAGAC . 45 19 60 0 . 48 16 31 0 1 MYBL1 4603 broad.mit.edu;bcgsc.ca 37 8 67477040 67477040 + Silent SNP T T A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . MYBL1-395 NM_001080416 exon16 c.A2151T p.T717T AACCACTGTTTCC . 11 4 18 0 . 5 3 2 0 0 CSMD3 114788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 113249531 113249531 + Nonsense_Mutation SNP G G T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . CSMD3-1132 NM_198123 exon67 c.C10515A p.Y3505X GAAATTGTAAGAG . 104 38 99 0 . 0 0 0 0 0 CSMD3 114788 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 113249566 113249566 + Missense_Mutation SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . CSMD3-1132 NM_198123 exon67 c.G10480T p.V3494L CAAATACATCATC . 80 25 82 0 . 0 0 0 0 0 DENND3 22898 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 142186773 142186773 + Silent SNP C C T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . DENND3-91 NM_014957 exon15 c.C2379T p.F793F AGTCTTCGAAGCC . 91 40 121 0 . 8 7 1 0 0 FAM83H 286077 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 144809117 144809117 + Silent SNP G G C novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . FAM83H-92 NM_198488 exon5 c.C2514G p.A838A GCTCTGGGCAGAG . 22 8 28 0 . 17 10 7 0 0 SMARCA2 6595 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 2110312 2110312 + Silent SNP C C T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . SMARCA2-653 NM_139045 exon24 c.C3351T p.S1117S TGGATCCCAGTAT . 102 32 64 0 . 20 16 4 0 0 MELK 9833 bcgsc.ca 37 9 36651842 36651842 + Missense_Mutation SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . MELK-760 NM_014791 exon12 c.C1021A p.Q341K TGTGGACAAGCCA . 312 43 293 5 . 6 6 0 0 0 SPATA31D1 389763 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 84607771 84607771 + Missense_Mutation SNP G G T novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . . NM_001001670 exon4 c.G2386T p.D796Y GACAAGGATCTGA . 102 37 157 0 . 0 0 0 0 0 PALM2-AKAP2 445815 ucsc.edu 37 9 112899612 112899612 + Missense_Mutation SNP C C A rs201181068 TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . PALM2-AKAP2-475 NM_007203 exon8 c.C1788A p.D596E CTCAGACAAGCCA . 98 10 124 5 . 31 22 9 0 0 SVEP1 79987 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 113141740 113141740 + Missense_Mutation SNP T T C novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . SVEP1-75 NM_153366 exon44 c.A10295G p.Y3432C TATTGATAATGTA . 71 33 79 0 . 6 6 0 0 0 OR1B1 347169 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 125391500 125391500 + Silent SNP G G A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . OR1B1-68 NM_001004450 exon1 c.C315T p.F105F ATAGAAGAAAAAG . 55 21 60 0 . 0 0 0 0 0 EIF1AX 1964 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 20152121 20152121 + Missense_Mutation SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . EIF1AX-131 NM_001412 exon4 c.G209T p.W70L TTTATCCAAACCT . 33 20 37 0 . 0 0 0 0 0 GPR34 2857 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 41555435 41555435 + Silent SNP T T A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . GPR34-131 NM_001097579 exon3 c.T549A p.L183L TGCTCTTGGTGGA . 58 49 60 0 . 1 1 0 0 0 GPRASP1 9737 broad.mit.edu 37 X 101908967 101908967 + Silent SNP C C A novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . GPRASP1-131 NM_001099411 exon3 c.C126A p.T42T TAGGACCCAGGCC . 125 4 145 0 . 0 0 0 0 0 TXNRD1 7296 broad.mit.edu;bcgsc.ca 37 12 104721450 104721453 + Splice_Site DEL GTGA GTGA - novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 GTGA GTGA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . TXNRD1-90 . . . . GTCAAGGTGAGTG . 21 9 45 0 . 0 0 0 0 0 COL4A3BP 10087 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 74712823 74712828 + In_Frame_Del DEL TACCAT TACCAT - novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 TACCAT TACCAT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . COL4A3BP-226 NM_001130105 exon8 c.1094_1099del p.365_367del . . 73 26 89 0 . 0 0 0 0 0 IL32 9235 broad.mit.edu 37 16 3119304 3119305 + Frame_Shift_Ins INS - - G novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . IL32-92 NM_001012632 exon7 c.515_516insG p.D172fs GGGGGGACAAGGA . 447 21 227 0 . 0 0 0 0 0 BCORL1 63035 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 129173153 129173154 + Frame_Shift_Ins INS - - CTGG novel TCGA-BQ-5893-01A-11D-1589-08 TCGA-BQ-5893-11A-01D-1589-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c3f8ab09-b776-4ca3-9b9d-f9848542f3dd bbfe1ddb-1749-401c-b2f8-9b0854ae7d23 . BCORL1-294 NM_021946 exon9 c.4514_4515insCTGG p.I1505fs . . 38 22 74 0 . 0 0 0 0 0