Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PLCH2	9651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	2436173	2436173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	PLCH2-229	NM_014638	exon22	c.G3772A	p.G1258S	AGCCTGGGCGACC	.	48	19	46	0	.	41	27	14	0	0
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22214014	22214014	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	HSPG2-141	NM_005529	exon8	c.G857T	p.G286V	TGGGGCCCACAGG	.	80	37	70	0	.	23	18	5	0	0
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	42048585	42048585	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	HIVEP3-157	NM_024503	exon4	c.T1884A	p.L628L	TTTGGTAAGCTCG	.	152	61	183	0	.	5	5	0	0	0
CYP4A11	1579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	47402352	47402352	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	CYP4A11-94	NM_000778	exon4	c.C494G	p.S165C	CGTACAGAGTCTG	.	62	23	79	0	.	7	5	2	0	0
ZCCHC11	23318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	52902541	52902541	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ZCCHC11-93	NM_001009881	exon26	c.C4048A	p.R1350R	AGTCTCGAGTATC	.	160	72	178	0	.	57	33	24	0	0
ZNF326	284695	broad.mit.edu;bcgsc.ca	37	1	90475714	90475714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ZNF326-91	NM_182976	exon6	c.A683G	p.N228S	CCACCAATGTGAC	.	140	7	142	1	.	44	44	0	0	0
MSTO1	55154	hgsc.bcm.edu	37	1	155581021	155581021	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	MSTO1-90	NM_018116	exon4	c.C305G	p.T102S	AGCTCACCACACA	.	132	23	159	0	.	36	18	18	0	0
CEP350	9857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	180000535	180000535	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	CEP350-26	NM_014810	exon15	c.A3631C	p.K1211Q	GGAAAGAAATCTG	.	38	16	36	0	.	10	5	5	0	0
PTPN14	5784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	214556993	214556993	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	PTPN14-290	NM_005401	exon13	c.C2205T	p.A735A	CAGCTGGGCACTG	.	67	30	78	0	.	23	7	16	0	0
PITRM1	10531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	3206029	3206029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	PITRM1-91	NM_014889	exon7	c.C679T	p.P227S	GGTCAGGAAGAAG	.	63	28	79	0	.	90	0	90	0	0
MCM10	55388	hgsc.bcm.edu	37	10	13251301	13251301	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	MCM10-653	NM_182751	exon20	c.C2619G	p.S873R	GAACAGCCTTAAA	.	46	3	30	0	.	2	2	0	0	0
NCOA4	8031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	51586276	51586276	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	NCOA4-1042	NM_001145261	exon10	c.A1752T	p.V584V	GGAAGTATTACTT	.	127	48	137	0	.	0	0	0	0	0
PTEN	5728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	89717669	89717669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	PTEN-17735	NM_000314	exon7	c.A694G	p.T232A	GGACCCACACGAC	.	91	30	116	1	.	102	57	45	0	0
DRD4	1815	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	639919	639919	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	DRD4-90	NM_000797	exon3	c.G670A	p.V224M	TGGGAGGTGGCAC	.	33	15	39	0	.	2	1	1	0	0
OR4A16	81327	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	55110978	55110978	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	OR4A16-69	NM_001005274	exon1	c.T302C	p.I101T	TCTTCATAGAACA	.	268	22	317	0	.	0	0	0	0	0
BAD	572	hgsc.bcm.edu	37	11	64039200	64039200	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	BAD-1271	NM_032989	exon3	c.A263G	p.E88G	GGCTCCTCCCCCA	.	12	4	19	0	.	78	28	50	0	0
UBE4A	9354	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118250228	118250228	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	UBE4A-229	NM_004788	exon11	c.C1660T	p.Q554X	GATGCTCAGCAAA	.	97	51	144	0	.	29	24	5	0	0
NLRX1	79671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	119044337	119044337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	NLRX1-92	NM_024618	exon5	c.C379T	p.P127S	CGCCCACCCGCGG	.	46	18	71	0	.	40	16	24	0	0
TRIM29	23650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	119988941	119988941	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	TRIM29-291	NM_012101	exon7	c.C1617T	p.F539F	CAGGGAGAAGGAG	.	33	12	37	0	.	0	0	0	0	0
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	2909052	2909052	+	Silent	SNP	A	A	G	rs201311104		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	FKBP4-226	NM_002014	exon6	c.A708G	p.Q236Q	GTTCCAAATCCCA	.	33	19	39	0	A|0.999;G|0.001	186	106	80	0	0
DPPA3	359787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7867786	7867786	+	Silent	SNP	T	T	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	DPPA3-226	NM_199286	exon2	c.T90A	p.S30S	GGCCTCTCAAATC	.	223	102	235	0	.	0	0	0	0	0
CNTN1	1272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	41323760	41323760	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	CNTN1-1149	NM_001256063	exon7	c.A659G	p.K220R	TTACAAAGAGCGT	.	210	85	219	0	.	0	0	0	0	0
CCNT1	904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49087909	49087909	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	CCNT1-418	NM_001240	exon9	c.C1088A	p.S363Y	GGTAAGGAATGAT	.	176	78	154	0	.	21	12	9	0	0
KRT80	144501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52579248	52579248	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	KRT80-226	NM_182507	exon2	c.G424C	p.E142Q	GCAGTTCCTCCTG	.	89	42	117	1	.	37	16	21	0	0
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	67699344	67699344	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	CAND1-516	NM_018448	exon10	c.G1896A	p.L632L	GGCATTGACACTG	.	152	78	150	1	.	50	27	23	0	0
DCLK1	9201	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	36700222	36700222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	DCLK1-826	NM_004734	exon2	c.C53T	p.A18V	CTCTGCGCCTTAT	.	87	17	142	0	.	0	0	0	0	0
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	39450406	39450406	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	FREM2-100	NM_207361	exon20	c.T8431G	p.Y2811D	GGGACCTATACTG	.	82	42	97	0	.	37	18	19	0	0
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20845481	20845481	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	TEP1-95	NM_007110	exon41	c.C6046T	p.L2016L	GTCCTAGCACAGG	.	49	22	41	0	.	30	17	13	0	0
PNP	4860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20944608	20944608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	PNP-229	NM_000270	exon6	c.C718T	p.L240F	TTCTCACTCATCA	.	93	43	94	0	.	213	131	82	0	0
RNF31	55072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24626550	24626550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	RNF31-90	NM_017999	exon15	c.C2545T	p.R849C	TGGAAACGCATGA	.	28	16	37	0	.	49	29	20	0	0
KIAA0391	9692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	35592664	35592664	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	KIAA0391-226	NM_014672	exon2	c.T213G	p.D71E	GAAAGATGAGGGC	.	52	25	61	0	.	39	21	18	0	0
VTI1B	10490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	68118141	68118141	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	VTI1B-90	NM_006370	exon6	c.G660A	p.L220L	GCCTCCCAGGATG	.	89	48	98	0	.	257	135	122	0	0
HHIPL1	84439	hgsc.bcm.edu	37	14	100119115	100119115	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	HHIPL1-70	NM_032425	exon2	c.C810G	p.Y270X	CTACTACTCAGTG	.	35	2	44	0	.	0	0	0	0	0
SIN3A	25942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75664533	75664533	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SIN3A-230	NM_001145358	exon21	c.C3609T	p.S1203S	ACGCTTGCTTACA	.	135	47	151	0	.	66	33	33	0	0
TICRR	90381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90138745	90138745	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	.	NM_152259	exon7	c.T1803C	p.D601D	TCCGGATGTGGCT	.	88	40	119	0	.	0	0	0	0	0
GUCY2D	3000	ucsc.edu	37	17	7919110	7919110	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	GUCY2D-319	NM_000180	exon16	c.G2994A	p.L998L	CTGCCTGTTTGGG	.	35	4	27	0	.	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	524	80	345	51	.	123	20	103	0	0
SPAG5	10615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	26911390	26911390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SPAG5-90	NM_006461	exon12	c.T2270C	p.L757P	TGGCAGAGTAACT	.	368	253	291	0	.	9	4	5	0	0
KRT27	342574	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	38938378	38938378	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	KRT27-90	NM_181537	exon1	c.T368C	p.F123S	GGTCCAAATTTCT	.	190	10	129	0	.	0	0	0	0	0
COL1A1	1277	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	48275830	48275830	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	COL1A1-986	NM_000088	exon6	c.G507C	p.E169D	TGATTTCTCATCA	.	69	21	50	1	.	15	13	2	0	0
DYNLL2	140735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	56164457	56164457	+	Silent	SNP	T	T	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	DYNLL2-90	NM_080677	exon2	c.T6A	p.S2S	CATGTCTGACCGG	.	90	62	75	1	.	311	101	210	0	0
HEXDC	284004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80382347	80382347	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	HEXDC-92	NM_173620	exon3	c.T162C	p.P54P	GGGCCCTCTGAGG	.	139	38	115	0	.	42	22	20	0	0
ZNF521	25925	broad.mit.edu	37	18	22902006	22902006	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ZNF521-275	NM_015461	exon3	c.C186G	p.I62M	TTCTGTGATATCG	.	102	3	114	0	.	0	0	0	0	0
TIMM21	29090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	71816322	71816322	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	.	NM_014177	exon1	c.C279G	p.T93T	GGGAACCGCCGTC	.	67	32	72	0	.	42	25	17	0	0
STXBP2	6813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7712265	7712265	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	STXBP2-91	NM_001272034	exon18	c.A1597T	p.N533Y	CACAAGAACAAGG	.	52	21	57	0	.	154	3	150	0	1
DOCK6	57572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	11312640	11312640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	DOCK6-93	NM_020812	exon44	c.G5613T	p.K1871N	CTTACGCTTGTGT	.	20	11	16	0	.	45	30	15	0	0
DOCK6	57572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11312680	11312680	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	DOCK6-93	NM_020812	exon44	c.C5573G	p.P1858R	CCATCCGGCGTGA	.	35	10	42	0	.	24	14	10	0	0
OR7A17	26333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	14991895	14991895	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	OR7A17-68	NM_030901	exon1	c.C273T	p.V91V	GGTGATGACTCTG	.	126	59	95	0	.	0	0	0	0	0
USHBP1	83878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	17362478	17362478	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	USHBP1-91	NM_031941	exon12	c.G1835C	p.R612P	TCCCTGCGCAGAG	.	104	48	96	0	.	4	3	1	0	0
CRTC1	23373	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18876245	18876245	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	CRTC1-1361	NM_001098482	exon10	c.C966G	p.H322Q	ACAGCACCGCCCA	.	180	66	199	0	.	25	19	6	0	0
ZNF253	56242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	20003291	20003291	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ZNF253-90	NM_021047	exon4	c.C1235T	p.S412F	TCCTCTCCAAACA	.	38	19	37	0	.	25	13	12	0	0
KIR3DL2	3812	bcgsc.ca	37	19	55362679	55362679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	KIR3DL2-92	NM_001242867	exon2	c.C39A	p.F13L	AGGGTTCTTCTTG	.	309	18	280	3	.	0	0	0	0	0
ZNF471	57573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57037192	57037192	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ZNF471-154	NM_020813	exon5	c.T1756C	p.C586R	TCATCCTGTGCTC	.	76	33	62	0	.	0	0	0	0	0
ZNF514	84874	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	95815880	95815880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ZNF514-90	NM_032788	exon5	c.G350A	p.C117Y	CAACCGCAGGCTG	.	152	63	154	1	.	21	14	7	0	0
SULT1C4	27233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	109002781	109002781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SULT1C4-22	NM_006588	exon6	c.T749C	p.I250T	CATCGATTCCTGC	.	119	59	111	0	.	394	193	201	0	0
RANBP2	5903	hgsc.bcm.edu;broad.mit.edu	37	2	109370389	109370389	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	RANBP2-675	NM_006267	exon15	c.A2164T	p.I722L	AAGATTATAGATG	.	353	114	442	0	.	17	9	8	0	0
RPRM	56475	broad.mit.edu;bcgsc.ca	37	2	154334999	154334999	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	RPRM-204	NM_019845	exon1	c.G81A	p.V27V	GCAGCGCACGGCT	.	19	9	40	0	.	0	0	0	0	0
BAZ2B	29994	ucsc.edu	37	2	160295143	160295143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	BAZ2B-94	NM_013450	exon8	c.G964A	p.E322K	TTTTTTCCTGGGC	.	243	3	239	6	.	15	14	1	0	0
MYO3B	140469	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	171375969	171375969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	MYO3B-530	NM_138995	exon30	c.G3494A	p.R1165H	TACATCGTAGGAG	.	68	24	93	0	.	0	0	0	0	0
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	178098803	178098803	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	NFE2L2-90	NM_006164	exon2	c.G242T	p.G81V	AATTCACCTGTCT	.	98	51	68	0	.	175	98	77	0	0
COPS7B	64708	hgsc.bcm.edu;broad.mit.edu	37	2	232663673	232663673	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	COPS7B-228	NM_022730	exon6	c.A635G	p.E212G	AAGCAGAGGTAAG	.	21	9	23	0	.	0	0	0	0	0
PTPRT	11122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	41100970	41100970	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	PTPRT-664	NM_007050	exon8	c.C1386T	p.L462L	CAGCAAGAGTCGC	.	147	51	103	0	.	0	0	0	0	0
ZGPAT	84619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	62366823	62366823	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ZGPAT-90	NM_032527	exon6	c.T1364C	p.L455P	GGGCCCTGAGCCT	.	51	30	32	0	.	52	14	38	0	0
SFI1	9814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	32002357	32002357	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SFI1-90	NM_001007467	exon21	c.G2098C	p.D700H	CGAGTGGATGAAG	.	63	25	61	0	.	20	8	12	0	0
C1QTNF6	114904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37578251	37578251	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	C1QTNF6-90	NM_182486	exon3	c.C814G	p.L272V	TGATGAGGTGGCC	.	35	18	48	0	.	8	6	2	0	0
ARFGAP3	26286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	43213794	43213794	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ARFGAP3-153	NM_014570	exon10	c.T882C	p.I294I	GCCACTAATGTTC	.	139	63	174	0	.	46	22	24	0	0
SLC22A13	9390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38317429	38317429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SLC22A13-91	NM_004256	exon7	c.T1079C	p.L360P	TCGGCCTGGACGT	.	77	29	77	0	.	0	0	0	0	0
SACM1L	22908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	45773632	45773632	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SACM1L-91	NM_014016	exon13	c.A1089T	p.Q363H	AATGCAAGATGAA	.	146	69	151	0	.	0	0	0	0	0
SLC38A3	10991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50252997	50252997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SLC38A3-67	NM_006841	exon6	c.T395C	p.L132P	AGCAGCTGGGCTA	.	65	29	85	0	.	0	0	0	0	0
PPM1M	132160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52282683	52282683	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	.	NM_144641	exon7	c.C945T	p.L315L	GGATCTCAAGTAC	.	150	70	140	0	.	29	17	12	0	0
SLMAP	7871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	57827089	57827089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SLMAP-90	NM_007159	exon3	c.T410C	p.L137P	CCCGGCTCCGCTC	.	81	39	73	0	.	0	0	0	0	0
KIAA1524	57650	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	108282018	108282018	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	KIAA1524-92	NM_020890	exon13	c.G1589T	p.R530I	AATATTCTCAGTC	.	204	74	252	0	.	6	3	3	0	0
PLXND1	23129	hgsc.bcm.edu;broad.mit.edu	37	3	129290142	129290142	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	PLXND1-90	NM_015103	exon18	c.G3341C	p.C1114S	ACCTTGCAGAGCT	.	21	8	15	0	.	2	2	0	0	0
ZNF721	170960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	436019	436019	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ZNF721-47	NM_133474	exon3	c.C2237G	p.T746R	GTATGAATTTTCT	.	33	12	29	0	.	13	5	8	0	0
NSUN7	79730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	40778094	40778094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	NSUN7-90	NM_024677	exon7	c.C854A	p.S285Y	TCCATTCTGTAAA	.	41	19	52	0	.	7	4	3	0	0
POLR2B	5431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	57861558	57861558	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	POLR2B-92	NM_000938	exon6	c.C718A	p.L240M	AGCATGCTGGCAA	.	122	55	147	1	.	109	55	54	0	0
POLR2B	5431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	57891054	57891054	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	POLR2B-92	NM_000938	exon22	c.A2967G	p.V989V	AAAGGTATCGGCT	.	86	38	91	0	.	0	0	0	0	0
DHX29	54505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	54591351	54591351	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	DHX29-229	NM_019030	exon5	c.T507C	p.D169D	AAGTGCATCTTAA	.	58	24	67	0	.	0	0	0	0	0
MAST4	375449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	66448594	66448594	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	MAST4-647	NM_001164664	exon25	c.T3425C	p.I1142T	AGCCGATTGTGAT	.	150	78	131	1	.	38	26	11	1	0
BDP1	55814	ucsc.edu	37	5	70858261	70858261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	BDP1-92	NM_018429	exon38	c.G7657A	p.E2553K	AGCCAGGAAAAAA	.	74	1	89	0	.	9	8	1	0	0
CTNNA1	1495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	138268291	138268291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	CTNNA1-671	NM_001903	exon17	c.G2323A	p.D775N	AAGCAGGACCTGC	.	34	19	43	0	.	1185	586	599	0	0
ANKHD1	54882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	139864824	139864824	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ANKHD1-185	NM_017747	exon12	c.T1989C	p.H663H	TACTCATCGACTC	.	46	18	49	0	.	0	0	0	0	0
TMCO6	55374	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140021512	140021512	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	TMCO6-90	NM_018502	exon4	c.G372A	p.L124L	CCTGCTGCAGCTT	.	89	37	88	0	.	28	12	16	0	0
C6orf47	57827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31627425	31627425	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	C6orf47-91	NM_021184	exon1	c.T300C	p.T100T	CTCTTGAGTGCTA	.	86	35	83	0	.	86	44	42	0	0
PHF1	5252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33380325	33380325	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	PHF1-226	NM_024165	exon3	c.A200T	p.D67V	TTGAGGATGATTC	.	114	45	146	0	.	63	32	31	0	0
NCR2	9436	broad.mit.edu	37	6	41303624	41303624	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	NCR2-91	NM_004828	exon1	c.C10T	p.R4X	GCCTGGCGAGCCC	.	5	3	9	0	.	0	0	0	0	0
GUCA1B	2979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	42152609	42152609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	GUCA1B-92	NM_002098	exon4	c.G547T	p.D183Y	TCATGTCCATCTG	.	89	46	112	0	.	0	0	0	0	0
SYNJ2	8871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	158450005	158450005	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SYNJ2-227	NM_003898	exon3	c.C432T	p.V144V	GACTGTCCGCACG	.	89	34	76	0	.	15	10	5	0	0
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	21678590	21678590	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	DNAH11-146	.	.	.	.	TGAATACCTGGAA	.	174	45	145	1	.	0	0	0	0	0
OR2AE1	81392	broad.mit.edu	37	7	99474253	99474253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	OR2AE1-90	NM_001005276	exon1	c.T404C	p.L135P	TTCATGAGCACAG	.	109	3	86	0	.	2	2	0	0	0
ARMC10	83787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	102724230	102724230	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ARMC10-91	NM_031905	exon3	c.A346G	p.R116G	ATTGAAAGAGCTT	.	98	32	76	0	.	89	62	27	0	0
ZNF862	643641	broad.mit.edu	37	7	149559260	149559260	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ZNF862-69	NM_001099220	exon7	c.C3011A	p.P1004Q	ACCTCCCGTTCTC	.	107	5	75	1	.	0	0	0	0	0
RP1	6101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	55534829	55534829	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	RP1-102	NM_006269	exon3	c.A768G	p.A256A	AAATGCAAAGTCA	.	51	18	51	0	.	0	0	0	0	0
POP1	10940	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	99152324	99152324	+	Nonsense_Mutation	SNP	G	G	T	rs184169115	alternate_allele	TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	POP1-154	NM_001145860	exon10	c.G1381T	p.E461X	ACAGAGGAGACAC	.	59	25	54	1	G|0.999;A|0.000	4	4	0	0	0
SLC45A4	57210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	142238284	142238284	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SLC45A4-70	NM_001080431	exon1	c.C82T	p.Q28X	CTTTCTGAAGACT	.	187	83	217	0	.	0	0	0	0	0
SYN1	6853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	47432308	47432308	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SYN1-131	NM_006950	exon13	c.C2073G	p.T691T	GCGGATGGTCTCA	.	58	56	74	0	.	0	0	0	0	0
RRAGB	10325	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	55744773	55744773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	RRAGB-130	NM_016656	exon1	c.G13A	p.D5N	GAATCTGACTCTG	.	11	10	14	0	.	43	1	42	0	0
HEPH	9843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	65390505	65390505	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	HEPH-135	NM_138737	exon2	c.C255T	p.G85G	CCTGGGCATCCGG	.	23	19	25	0	.	1	1	0	0	0
ARHGAP36	158763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	130215818	130215818	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ARHGAP36-133	NM_144967	exon2	c.G179A	p.R60H	TGGAGCGTCTGAA	.	96	87	127	0	.	0	0	0	0	0
MFN2	9927	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	12061548	12061549	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	MFN2-91	NM_014874	exon9	c.907_908del	p.303_303del	.	.	47	26	48	0	.	0	0	0	0	0
SF3B2	10992	hgsc.bcm.edu	37	11	65819834	65819859	+	Frame_Shift_Del	DEL	CGCGCGCCTTCCTGCGGCTAAGATGG	CGCGCGCCTTCCTGCGGCTAAGATGG	-	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	CGCGCGCCTTCCTGCGGCTAAGATGG	CGCGCGCCTTCCTGCGGCTAAGATGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SF3B2-92	NM_006842	wholegene			.	.	47	10	45	0	.	0	0	0	0	0
PAK1	5058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	77047284	77047284	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	PAK1-957	NM_001128620	exon13	c.1260delA	p.K420fs	.	.	104	43	121	0	.	0	0	0	0	0
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu	37	12	43823478	43823478	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ADAMTS20-795	NM_025003	exon24	c.3431delT	p.L1144fs	.	.	27	12	19	0	.	0	0	0	0	0
KBTBD6	89890	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	41705610	41705612	+	In_Frame_Del	DEL	CAC	CAC	-	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	CAC	CAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	KBTBD6-92	NM_152903	exon1	c.1036_1038del	p.346_346del	.	.	94	29	152	0	.	0	0	0	0	0
COX5A	9377	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	75221461	75221461	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	COX5A-90	NM_004255	exon2	c.213delT	p.R71fs	.	.	108	34	174	0	.	0	0	0	0	0
SLC46A1	113235	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	26731859	26731859	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	SLC46A1-22	NM_001242366	exon2	c.856delG	p.D286fs	.	.	112	70	88	0	.	0	0	0	0	0
ADAMTS9	56999	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	64536694	64536703	+	Frame_Shift_Del	DEL	CACCACCTTG	CACCACCTTG	-	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	CACCACCTTG	CACCACCTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	ADAMTS9-230	NM_182920	exon31	c.4734_4743del	p.1578_1581del	.	.	135	26	237	0	.	0	0	0	0	0
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	151880116	151880116	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	MLL3-1398	NM_170606	exon35	c.5208delT	p.F1736fs	.	.	463	289	340	0	.	0	0	0	0	0
MATN2	4147	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	98943606	98943609	+	Frame_Shift_Del	DEL	CTAA	CTAA	-	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	CTAA	CTAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	MATN2-24	NM_002380	exon3	c.568_571del	p.190_191del	.	.	44	19	53	0	.	0	0	0	0	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49435198	49435199	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	MLL2-612	NM_003482	exon31	c.6355_6356insC	p.A2119fs	.	.	38	19	42	0	.	0	0	0	0	0
TCERG1	10915	broad.mit.edu	37	5	145886722	145886723	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-7051-01A-12D-1961-08	TCGA-BQ-7051-11A-02D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9b9c9f82-1e35-4ff6-94dc-0d2af8f0219b	d10a271b-6cf9-4623-a59e-f8cb7afcaca5	.	TCERG1-92	NM_006706	exon19	c.2862_2863insA	p.T954fs	ACTTACCAAAAAA	.	89	7	86	0	.	0	0	0	0	0