Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ZMYM1	79830	broad.mit.edu	37	1	35579564	35579564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	ZMYM1-90	NM_024772	exon10	c.A2133G	p.I711M	TAAAATACATGGC	.	27	3	64	0	.	2	2	0	0	0
CPSF7	79869	broad.mit.edu	37	11	61183647	61183647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	CPSF7-90	NM_024811	exon6	c.C1024A	p.P342T	CGTTTGGTGGGGG	.	168	6	173	0	.	28	27	1	0	0
PYGM	5837	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	64522811	64522811	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	PYGM-92	NM_005609	exon7	c.C789T	p.Y263Y	CTGGATGTAGCCA	.	211	11	216	1	.	2	2	0	0	0
CRY1	1407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	107399011	107399011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	CRY1-93	NM_004075	exon3	c.A283G	p.K95E	AAAGTTTAGTAAT	.	167	64	149	0	.	4	2	2	0	0
HNRNPM	4670	ucsc.edu	37	19	8527467	8527467	+	Splice_Site	SNP	T	T	G	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	HNRNPM-68	NM_031203	exon3	c.336+2T>G	.	CAAGGGTAAGTGT	.	145	2	159	2	.	1	1	0	0	0
ZNF181	339318	hgsc.bcm.edu	37	19	35232372	35232372	+	Silent	SNP	A	A	G	rs2607244		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	ZNF181-91	NM_001029997	exon4	c.A1086G	p.S362S	TAGGTCATCTCTC	.	49	5	56	2	A|1.000;|0.000	11	11	0	0	0
SYT3	84258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51135675	51135675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	SYT3-155	NM_032298	exon2	c.C542T	p.P181L	TGGCTCGGTTTGA	.	74	23	71	0	.	0	0	0	0	0
ZNF304	57343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57869057	57869057	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	ZNF304-91	NM_020657	exon3	c.G1820A	p.R607K	ACCAGAGGGTTCA	.	106	23	90	0	.	5	4	1	0	0
TGFBRAP1	9392	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	105886051	105886051	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	TGFBRAP1-91	NM_004257	exon11	c.C2084T	p.A695V	TCGGCCGCTGCAA	.	35	6	45	0	.	6	5	1	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179659659	179659659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	TTN-636	NM_001267550	exon7	c.G1235A	p.G412D	TTAGCACCAGTGG	.	114	43	114	1	.	0	0	0	0	0
FRG1B	284802	broad.mit.edu	37	20	29628263	29628263	+	RNA	SNP	A	A	G	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	FRG1B-22	.	.	.	.	TGCTTTATTAGAT	.	161	5	129	1	.	90	90	0	0	0
MUC13	56667	broad.mit.edu	37	3	124632011	124632011	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	MUC13-90	NM_033049	exon8	c.T1158C	p.P386P	ACACTCAGGGGCC	.	81	4	84	1	.	0	0	0	0	0
DEFB114	245928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	49931770	49931770	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	DEFB114-91	NM_001037499	exon1	c.C49T	p.L17L	CTGGTAGAATGAA	.	60	11	71	0	.	0	0	0	0	0
SEPT7	989	hgsc.bcm.edu	37	7	35930362	35930362	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	.	NM_001011553	exon10	c.T954C	p.Y318Y	GACTTATAATGGA	.	48	3	29	1	.	119	119	0	0	0
MPDZ	8777	hgsc.bcm.edu	37	9	13183483	13183483	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	MPDZ-231	NM_003829	exon19	c.T2583C	p.S861S	ATGAAGAGATAAA	.	48	3	44	0	.	15	15	0	0	0
XPNPEP2	7512	bcgsc.ca	37	X	128895980	128895980	+	Splice_Site	SNP	A	A	G	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	XPNPEP2-130	NM_003399	exon18	c.1604-2A>G	.	CTTTCTAGGGCCA	.	63	4	73	0	.	0	0	0	0	0
MAGEA6	4105	broad.mit.edu	37	X	151870045	151870045	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	MAGEA6-90	NM_005363	exon3	c.G735A	p.L245L	GAAGCTGCTCACC	.	214	7	193	0	.	0	0	0	0	0
CCDC71	64925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	49200861	49200862	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	CCDC71-91	NM_022903	exon2	c.780_781del	p.260_261del	.	.	152	43	194	0	.	0	0	0	0	0
KRTAP1-3	81850	hgsc.bcm.edu	37	17	39190845	39190846	+	Missense_Mutation	DNP	GG	GG	CA	novel		TCGA-BQ-7055-01A-11D-1961-08	TCGA-BQ-7055-11A-01D-1961-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	69910e4a-5f3a-49c8-9c58-5f5fc0b4625a	1a7e89d4-822a-4ca2-b6e3-e3114990152b	.	.		exon1	c.C228T	p.Q77E	GGTCTGGCAGCAG	.	128.0	8.0	101.0	2.0	.	0	0	0	0	0