Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
KIF1B	23095	ucsc.edu	37	1	10328256	10328256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	KIF1B-93	NM_183416	exon7	c.G655A	p.A219T	TCCCACGCTGTGT	.	41	5	56	0	.	22	22	0	0	0
MTOR	2475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	11307790	11307790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	MTOR-1439	NM_004958	exon8	c.G1117T	p.V373L	GGCACACCTGAGA	.	90	18	114	0	.	0	0	0	0	0
ZMYM6	9204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	35476600	35476600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ZMYM6-93	NM_007167	exon9	c.C1100T	p.A367V	GGCACCGCCGAAG	.	95	37	87	1	.	6	2	4	0	0
GLMN	11146	hgsc.bcm.edu;broad.mit.edu	37	1	92712096	92712096	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	GLMN-227	NM_053274	exon19	c.G1776C	p.G592G	CTTTATCCCAATA	.	39	3	38	0	.	1	1	0	0	0
LCE2A	353139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152671691	152671691	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	LCE2A-68	NM_178428	exon2	c.G314C	p.C105S	GGGACTGCTGCTG	.	127	32	121	0	.	0	0	0	0	0
DHX9	1660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	182850707	182850707	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	DHX9-92	NM_001357	exon24	c.A2839G	p.M947V	CTTAATATGGCTA	.	105	76	144	0	.	154	12	142	0	0
ABCC2	1244	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101569944	101569944	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ABCC2-91	NM_000392	exon14	c.C1869T	p.D623D	CTTGGACACATCT	.	48	18	78	0	.	70	32	38	0	0
GBF1	8729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104112265	104112265	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	GBF1-91	NM_001199378	exon7	c.C574G	p.L192V	CAGCTGCTCTTCA	.	91	31	125	2	.	0	0	0	0	0
TRIM68	55128	hgsc.bcm.edu;broad.mit.edu	37	11	4621934	4621934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TRIM68-91	NM_018073	exon7	c.T1030C	p.Y344H	TATTATAGCGGTA	.	57	5	47	1	.	17	17	0	0	0
RTN3	10313	hgsc.bcm.edu	37	11	63487952	63487952	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	RTN3-91	NM_001265589	exon3	c.G1978C	p.E660Q	TTTACAGAAACCA	.	43	3	63	1	.	0	0	0	0	0
GAL3ST3	89792	hgsc.bcm.edu	37	11	65810436	65810436	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	GAL3ST3-91	NM_033036	exon3	c.C838G	p.P280A	CCGCGGGGATGGC	.	14	3	21	0	.	0	0	0	0	0
GRM5	2915	broad.mit.edu	37	11	88242044	88242044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	GRM5-949	NM_001143831	exon9	c.C3355T	p.P1119S	TGGCCGGCAGAGG	.	21	7	14	0	.	1	1	0	0	0
MMP27	64066	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102567479	102567479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	MMP27-229	NM_022122	exon5	c.C707T	p.P236L	TAATTTGGGAACA	.	41	6	50	0	.	0	0	0	0	0
POU2AF1	5450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	111225200	111225200	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	POU2AF1-658	NM_006235	exon5	c.T557C	p.L186P	GTGGGTAGTGTGG	.	71	25	63	1	.	1	1	0	0	0
SLC6A13	6540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	346409	346409	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SLC6A13-90	NM_016615	exon6	c.T611A	p.L204Q	CAGCGCAGGGCCC	.	164	41	133	0	.	135	98	37	0	0
ATN1	1822	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	7046365	7046365	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ATN1-139	NM_001007026	exon5	c.C1935G	p.S645S	CCCGTCCCCGGGG	.	95	54	76	0	.	235	99	136	0	0
TAS2R13	50838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	11061866	11061866	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TAS2R13-154	NM_023920	exon1	c.T32G	p.L11R	ATTACAAGAGTGA	.	54	31	41	0	.	0	0	0	0	0
GPR182	11318	broad.mit.edu	37	12	57389326	57389326	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	GPR182-500	NM_007264	exon2	c.G333A	p.L111L	GATGCTGGAGGTC	.	108	5	90	0	.	0	0	0	0	0
DPY19L2	283417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	64041138	64041138	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	DPY19L2-515	NM_173812	exon5	c.T596A	p.I199K	GAGGCTATGATTA	.	189	40	148	0	.	0	0	0	0	0
RFX4	5992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	107154995	107154995	+	Silent	SNP	T	T	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	RFX4-91	NM_001206691	exon18	c.T1983A	p.T661T	CCCCACTTCCCGG	.	528	282	430	1	.	0	0	0	0	0
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	117655909	117655909	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	NOS1-154	NM_001204218	exon29	c.A4333G	p.N1445D	GGCGGTTGGTCAC	.	603	135	458	0	.	0	0	0	0	0
RIMBP2	23504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	130919339	130919339	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	RIMBP2-142	NM_015347	exon11	c.C2142T	p.D714D	CTTGAAGTCTGGA	.	206	30	167	0	.	0	0	0	0	0
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20869208	20869208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TEP1-95	NM_007110	exon9	c.C1484T	p.P495L	GTCTCTGGCCTAG	.	125	39	133	1	.	7	5	2	0	0
HERC2	8924	hgsc.bcm.edu	37	15	28447597	28447597	+	Missense_Mutation	SNP	A	A	G	rs113634395		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	HERC2-234	NM_004667	exon46	c.T7376C	p.L2459P	ATCGGCAGAGCGG	.	66	11	63	0	.	17	15	2	0	0
TP53BP1	7158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43749140	43749140	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TP53BP1-294	NM_001141980	exon12	c.A1666T	p.M556L	GAGACATGGGTTC	.	66	27	108	0	.	31	13	18	0	0
MYO1E	4643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	59501015	59501015	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	MYO1E-514	NM_004998	exon14	c.C1395T	p.D465D	GCACACGTCATCC	.	71	16	73	0	.	73	65	8	0	0
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	63011987	63011987	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TLN2-573	NM_015059	exon22	c.C2899G	p.Q967E	ATCCCTCAGCTGG	.	36	13	52	0	.	9	3	6	0	0
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	79264261	79264261	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	RASGRF1-662	NM_002891	exon27	c.C3676T	p.R1226X	TCTCTCGGATAAT	.	216	75	233	0	.	1	1	0	0	0
KIAA1024	23251	broad.mit.edu	37	15	79748657	79748657	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	KIAA1024-183	NM_015206	exon2	c.C168T	p.L56L	TTGTCTCGATCCC	.	124	6	144	0	.	0	0	0	0	0
ROGDI	79641	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4849743	4849743	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ROGDI-92	NM_024589	exon6	c.C376G	p.L126V	TAAGCAGGTAAAT	.	19	4	39	0	.	46	26	20	0	0
MYH11	4629	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	15841744	15841744	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	MYH11-666	NM_001040114	exon19	c.C2258A	p.A753D	ATGCAGGCCTGCT	.	69	23	43	1	.	0	0	0	0	0
ZP2	7783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	21215430	21215430	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ZP2-91	NM_003460	exon9	c.A893T	p.Q298L	TGCAGCTGGCTCA	.	88	33	102	0	.	0	0	0	0	0
FOXC2	2303	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	86601010	86601010	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	FOXC2-226	NM_005251	exon1	c.T69G	p.N23K	GCAGAATTACTAC	.	85	32	93	0	.	2	2	0	0	0
TSR1	55720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	2232753	2232753	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TSR1-91	NM_018128	exon11	c.T1787A	p.M596K	ACCACCATATTCA	.	75	26	68	0	.	41	18	23	0	0
PITPNM3	83394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	6375990	6375990	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	PITPNM3-228	NM_031220	exon11	c.G1416A	p.Q472Q	GAGGGACTGCCCA	.	28	15	33	0	.	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	358	56	362	48	.	64	0	64	0	0
KRTAP1-3	81850	hgsc.bcm.edu	37	17	39190835	39190835	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	.	NM_030966	exon1	c.C239G	p.S80C	CCGCAGGAGCTGG	.	94	5	97	1	.	0	0	0	0	0
KRTAP1-3	81850	hgsc.bcm.edu	37	17	39190845	39190845	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	.	NM_030966	exon1	c.C229G	p.Q77E	TGGTCTGGCAGCA	.	102	6	101	1	.	0	0	0	0	0
ST6GALNAC2	10610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74570497	74570497	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ST6GALNAC2-90	NM_006456	exon3	c.G311A	p.R104H	CTCAGGCGGTCCC	.	44	16	40	0	.	177	92	84	0	1
FUT3	2525	ucsc.edu	37	19	5844830	5844830	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	FUT3-90	NM_001097640	exon3	c.C21A	p.A7A	TGGCTTGGCTGCA	.	47	8	33	4	.	0	0	0	0	0
TRMT1	55621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	13226494	13226494	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TRMT1-92	NM_001136035	exon4	c.A399T	p.E133D	CAGGTTTTCACTC	.	299	114	280	0	.	32	18	14	0	0
SIN3B	23309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	16964967	16964967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SIN3B-228	NM_015260	exon8	c.T953C	p.L318P	GGGTGCTGAAGAG	.	65	28	64	0	.	14	6	8	0	0
LSR	51599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35757260	35757260	+	Splice_Site	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	LSR-90	NM_015925	exon5	c.866-2A>G	.	CCTCACAGTGTAT	.	140	39	175	0	.	1	0	1	0	0
C19orf55	148137	broad.mit.edu	37	19	36253153	36253153	+	Splice_Site	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	C19orf55-23	NM_001039887	exon5	c.440-1G>A	.	TTCTCAGCAGGAG	.	21	4	23	0	.	0	0	0	0	0
ZSCAN4	201516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58187881	58187881	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ZSCAN4-91	NM_152677	exon3	c.C368G	p.T123S	ACCTGACTGATGA	.	73	26	73	0	.	0	0	0	0	0
KHK	3795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27317347	27317347	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	KHK-115	NM_000221	exon3	c.T212A	p.F71Y	GCAGTTTTGTCCT	.	125	35	152	1	.	14	7	7	0	0
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	61450209	61450209	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	USP34-579	NM_014709	exon64	c.C7735G	p.R2579G	CAAGTCGATTATT	.	38	10	46	0	.	3	1	2	0	0
ZNF638	27332	broad.mit.edu	37	2	71576384	71576384	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ZNF638-94	NM_014497	exon2	c.T300G	p.H100Q	GCCTCATGGTAGC	.	90	3	102	0	.	18	18	0	0	0
GCFC2	6936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	75921529	75921529	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	.	NM_003203	exon6	c.C858G	p.H286Q	TGAGCGGTGAGTT	.	98	40	125	0	.	6	3	3	0	0
KIAA1211L	343990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	99411105	99411105	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	.	NM_207362	exon10	c.C2779G	p.L927V	GATGCAGTTCCTT	.	144	60	125	0	.	7	5	2	0	0
ARHGAP15	55843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	143986166	143986166	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ARHGAP15-653	NM_018460	exon5	c.T313C	p.S105P	TCTACTTCCTGGA	.	90	25	117	1	.	7	7	0	0	0
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	168103542	168103542	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	XIRP2-104	NM_152381	exon9	c.T5640A	p.H1880Q	AAGCCATCGATGG	.	72	18	73	0	.	0	0	0	0	0
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	220309733	220309733	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SPEG-383	NM_005876	exon3	c.C665G	p.P222R	CCGGGCCACGGCA	.	22	9	16	0	.	0	0	0	0	0
MRPL44	65080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	224824513	224824513	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	MRPL44-90	NM_022915	exon2	c.A442G	p.M148V	CCAGACATGCCCA	.	106	47	114	0	.	81	50	31	0	0
SP110	3431	broad.mit.edu	37	2	231050754	231050754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SP110-155	NM_001185015	exon12	c.T1253C	p.V418A	TTTTGGACCCTCA	.	162	5	174	1	.	31	31	0	0	0
ENTPD6	955	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	25198149	25198149	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ENTPD6-90	NM_001247	exon9	c.G810C	p.Q270H	CCTGCAGGCCTCC	.	131	32	132	0	.	0	0	0	0	0
ADRBK2	157	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	26086189	26086189	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ADRBK2-955	NM_005160	exon12	c.G991A	p.A331T	GGACACGCAAGAA	.	41	8	60	0	.	1	1	0	0	0
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37365472	37365472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	GOLGA4-93	NM_001172713	exon15	c.G2161A	p.A721T	TTAAAAGCCCGTC	.	39	29	44	0	.	18	0	18	0	0
ACY1	95	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52023049	52023049	+	Silent	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ACY1-154	NM_001198895	exon15	c.G1185C	p.L395L	CCTGCTGCCTGCC	.	125	98	167	1	.	495	6	489	0	0
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52651555	52651555	+	Splice_Site	SNP	C	C	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	PBRM1-575	NM_018313	exon16	c.1542-1G>A	.	TTTTTACTGTTGA	.	35	23	38	0	.	0	0	0	0	0
KIAA2018	205717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113377559	113377559	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	KIAA2018-93	NM_001009899	exon7	c.A2970G	p.S990S	TGTATCTGATGAA	.	134	104	152	0	.	2	0	2	0	0
CD86	942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121822644	121822644	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	CD86-92	NM_175862	exon3	c.C350G	p.P117R	AAAAGCCCACAGG	.	77	64	125	0	.	6	6	0	0	0
USP38	84640	hgsc.bcm.edu;bcgsc.ca	37	4	144141548	144141548	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	USP38-660	NM_032557	exon10	c.G3068C	p.C1023S	GAAGCTGTGGACC	.	71	4	92	0	.	26	26	0	0	0
SMAD1	4086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	146475084	146475084	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SMAD1-415	NM_005900	exon6	c.T1146G	p.I382M	GAAAATTTTTAAC	.	101	36	141	0	.	14	8	6	0	0
IRF2	3660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	185339324	185339324	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	IRF2-91	NM_002199	exon5	c.C408G	p.I136M	TACCTTGATGTGC	.	186	64	187	0	.	0	0	0	0	0
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	187525694	187525694	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	FAT1-34	NM_005245	exon18	c.T10385C	p.L3462P	ACTACCAGCTGCA	.	38	13	37	0	.	173	94	79	0	0
FRG1	2483	hgsc.bcm.edu	37	4	190878625	190878625	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	FRG1-90	NM_004477	exon6	c.A505G	p.S169G	GCAAAAAGTAAAA	.	77	5	92	1	.	201	201	0	0	0
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	7766912	7766912	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ADCY2-97	NM_020546	exon17	c.T2207G	p.F736C	TATTTTTCCTCCC	.	252	87	265	1	.	1	0	1	0	0
UGT3A2	167127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	36039694	36039694	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	UGT3A2-158	NM_174914	exon5	c.T960G	p.F320L	GTGAGCAAAGGCA	.	126	46	122	0	.	0	0	0	0	0
GFRA3	2676	hgsc.bcm.edu	37	5	137610073	137610073	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	GFRA3-91	NM_001496	exon1	c.T41C	p.V14A	ATCAGGACTACGG	.	9	6	8	0	.	0	0	0	0	0
SNRPC	6631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	34730469	34730469	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SNRPC-90	NM_003093	exon3	c.T149C	p.I50T	GCCTGATTGACAA	.	22	6	25	0	.	0	0	0	0	0
PPARD	5467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	35392132	35392132	+	Silent	SNP	A	A	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	PPARD-187	NM_001171818	exon8	c.A654C	p.T218T	CGAGACATTGTGG	.	62	22	67	0	.	34	25	9	0	0
TCTE1	202500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	44254102	44254102	+	Missense_Mutation	SNP	C	C	T	rs149566851	bycluster;by1000genomes;alternate_allele	TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TCTE1-94	NM_182539	exon3	c.G445A	p.G149S	AGCTGCCGCCATG	.	108	22	91	0	C|1.000;A|0.000	0	0	0	0	0
TDRD6	221400	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	46660547	46660547	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TDRD6-138	NM_001168359	exon1	c.G4682C	p.R1561T	CAGACAGGAGAAA	.	70	30	86	0	.	0	0	0	0	0
FAM46A	55603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	82461531	82461531	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	FAM46A-90	NM_017633	exon2	c.G328A	p.E110K	GCTTCTCGGCCAG	.	67	31	71	0	.	0	0	0	0	0
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	117706858	117706858	+	Silent	SNP	T	T	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ROS1-1353	NM_002944	exon15	c.A2292T	p.G764G	TGTCTTTCCAGCC	.	118	53	143	0	.	0	0	0	0	0
RAET1G	353091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	150240371	150240371	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	RAET1G-90	NM_001001788	exon3	c.A439G	p.I147V	GGAAGATCTGTCC	.	130	59	142	0	.	2	1	1	0	0
PSMB1	5689	broad.mit.edu	37	6	170844433	170844433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	PSMB1-91	NM_002793	exon6	c.C601T	p.R201W	CCAGCCGCATGGC	.	86	6	89	0	.	460	416	44	0	0
HEATR2	54919	broad.mit.edu	37	7	813765	813765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	HEATR2-69	NM_017802	exon10	c.C2012T	p.A671V	CAGCCGCGGCCAT	.	141	5	84	0	.	69	64	5	0	0
HECW1	23072	broad.mit.edu	37	7	43581576	43581576	+	Silent	SNP	T	T	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	HECW1-669	NM_015052	exon26	c.T4227A	p.V1409V	CACTGTTAATGAA	.	163	7	104	0	.	26	24	2	0	0
GNAI1	2770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	79842142	79842142	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	GNAI1-653	NM_002069	exon7	c.A831G	p.K277K	AGAAAAAATCAAA	.	263	74	198	0	.	16	13	3	0	0
SAMD9	54809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	92734539	92734539	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SAMD9-140	NM_001193307	exon2	c.A872C	p.E291A	AAAACTTCCACAA	.	95	52	88	0	.	6	3	3	0	0
EPHB4	2050	broad.mit.edu	37	7	100417814	100417814	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	EPHB4-1446	NM_004444	exon5	c.C913A	p.R305S	CGACGCGGCACTG	.	302	8	232	1	.	67	67	0	0	0
SLC26A5	375611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	103029511	103029511	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SLC26A5-91	NM_206883	exon14	c.T1458C	p.Y486Y	CAAACCATAGTCC	.	78	17	54	0	.	0	0	0	0	0
KIAA1549	57670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	138602963	138602963	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	KIAA1549-369	NM_020910	exon2	c.A1409G	p.D470G	GAGAAGTCTGCTA	.	77	23	66	0	.	14	10	4	0	0
TMEM176B	28959	broad.mit.edu;bcgsc.ca	37	7	150493608	150493608	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	TMEM176B-91	NM_014020	exon2	c.C50G	p.P17R	TGGGATGGCCTAG	.	123	6	70	0	.	1645	1537	107	0	1
ZNF618	114991	ucsc.edu	37	9	116811236	116811236	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ZNF618-22	NM_133374	exon14	c.A1375C	p.T459P	GGTGTCACCTGCC	.	20	5	15	3	.	20	17	3	0	0
LAS1L	81887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	64749564	64749564	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	LAS1L-196	NM_031206	exon5	c.G709T	p.E237X	CTGACTCCGTACT	.	218	75	235	0	.	7	6	1	0	0
KIF4A	24137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	69637856	69637856	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	KIF4A-134	NM_012310	exon29	c.3372+2T>C	.	GCAAGGTAGGATC	.	115	44	134	0	.	0	0	0	0	0
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	144904633	144904633	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SLITRK2-136	NM_001144005	exon5	c.G690C	p.W230C	GGCCTGGCTAGAC	.	171	36	188	0	.	0	0	0	0	0
OPN1MW2	728458	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	153496172	153496172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	.	NM_001048181	exon5	c.C900A	p.H300Q	CTTCCACCCTTTG	.	263	134	253	1	.	0	0	0	0	0
NCAPD3	23310	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	134038822	134038822	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	NCAPD3-229	NM_015261	exon25	c.3229delC	p.Q1077fs	.	.	91	35	110	0	.	0	0	0	0	0
MGA	23269	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	42041819	42041837	+	Frame_Shift_Del	DEL	CTAATGTAATAAAACAAAA	CTAATGTAATAAAACAAAA	-	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	CTAATGTAATAAAACAAAA	CTAATGTAATAAAACAAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	MGA-522	NM_001164273	exon17	c.6014_6032del	p.2005_2011del	.	.	111	24	153	0	.	0	0	0	0	0
ZNF564	163050	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	12639496	12639497	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ZNF564-91	NM_144976	exon2	c.17_18del	p.6_6del	.	.	146	54	140	0	.	0	0	0	0	0
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	47164114	47164114	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SETD2-1273	NM_014159	exon3	c.2012delT	p.L671X	.	.	85	70	102	0	.	0	0	0	0	0
VCPIP1	80124	hgsc.bcm.edu	37	8	67578598	67578621	+	In_Frame_Del	DEL	TTAATGTCCTCCAGAGTGTCATGC	TTAATGTCCTCCAGAGTGTCATGC	-	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	TTAATGTCCTCCAGAGTGTCATGC	TTAATGTCCTCCAGAGTGTCATGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	VCPIP1-662	NM_025054	exon1	c.573_596del	p.191_199del	.	.	121	21	175	0	.	0	0	0	0	0
ASPM	259266	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	197073973	197073974	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ASPM-615	NM_018136	exon18	c.4408_4409insT	p.I1470fs	.	.	58	45	69	0	.	0	0	0	0	0
ANKRD26	22852	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	27349330	27349331	+	In_Frame_Ins	INS	-	-	TCA	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ANKRD26-138	NM_001256053	exon15	c.1508_1509insTGA	p.K503delinsMK	.	.	143	44	171	0	.	0	0	0	0	0
C16orf62	57020	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	19711796	19711797	+	Missense_Mutation	INS	-	-	G	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	C16orf62-69	NM_020314	exon31	c.3157_3158insG	p.X1053delinsW	.	.	85	28	99	0	.	0	0	0	0	0
PDE7B	27115	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	136512787	136512788	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	PDE7B-91	NM_018945	exon13	c.1162_1163insA	p.E388fs	.	.	35	12	38	0	.	0	0	0	0	0
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	77617295	77617296	+	Missense_Mutation	DNP	GA	GA	TT	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	ZFHX4		exon2	c.A973T	p.I325F	CAGGGGATTGGCA	.	161.0	63.0	142.0	0.0	.	0	0	0	0	0
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	144904634	144904635	+	Nonsense_Mutation	DNP	CT	CT	TA	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	SLITRK2		exon5	c.T692A	p.L231*	CCTGGCTAGACAC	.	173.0	37.0	187.0	1.0	.	0	0	0	0	0
GSPT2	23708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	51486959	51486960	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-BQ-7061-01A-11D-1961-08	TCGA-BQ-7061-11A-01D-1961-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ae48a526-0daa-42b6-b98e-1453e9dc631a	4968c132-2d26-4a31-ab07-6d7c154551de	.	GSPT2		exon1	c.C238T	p.P80S	CAGCCGCCCACCC	.	28.0	9.0	20.0	0.0	.	0	0	0	0	0