Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 NADK 65220 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 1686870 1686870 + Missense_Mutation SNP A A T novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . NADK-44 NM_001198994 exon9 c.T1066A p.F356I TCAGGAAGCCCAG . 268 48 259 0 . 90 57 33 0 0 RPL11 6135 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 24021204 24021204 + Missense_Mutation SNP T T G novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . RPL11-226 NM_000975 exon4 c.T319G p.F107V TTTGGTTTTGGGA . 131 43 127 0 . 2399 1566 833 0 0 ZSCAN20 7579 bcgsc.ca 37 1 33956714 33956714 + Missense_Mutation SNP A A G novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 A A - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . ZSCAN20-93 NM_145238 exon6 c.A856G p.S286G AAAAGGAGCACTG . 78 4 77 0 . 3 3 0 0 0 CC2D1B 200014 hgsc.bcm.edu 37 1 52822691 52822691 + Missense_Mutation SNP C C G novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . CC2D1B-92 NM_032449 exon16 c.G1878C p.M626I CAGAAGCATTTTT . 9 3 8 0 . 71 44 27 0 0 KCND3 3752 bcgsc.ca 37 1 112525250 112525250 + Missense_Mutation SNP G G T novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . KCND3-155 NM_004980 exon2 c.C99A p.D33E GTTCTTGTCGGCC . 84 5 52 0 . 1 1 0 0 0 S100A7L2 645922 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 153409541 153409541 + Missense_Mutation SNP C C A novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . S100A7L2-69 NM_001045479 exon3 c.G332T p.S111I CACTGGCTTCCCC . 309 63 375 2 . 0 0 0 0 0 ZBTB37 84614 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 173839638 173839638 + Missense_Mutation SNP T T C novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . ZBTB37-90 NM_032522 exon3 c.T275C p.I92T GGCGGATATGCCT . 80 19 71 0 . 3 2 1 0 0 NFASC 23114 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 1 204923960 204923960 + Missense_Mutation SNP C C A novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . NFASC-139 NM_001005388 exon7 c.C416A p.S139Y CAGAATCTCCTCT . 213 51 190 0 . 0 0 0 0 0 FMN2 56776 bcgsc.ca 37 1 240371517 240371517 + Silent SNP T T A novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 T T - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . FMN2-145 NM_020066 exon5 c.T3405A p.L1135L CCCTCTTCCCGGA . 41 14 32 1 . 0 0 0 0 0 ITGB1 3688 broad.mit.edu 37 10 33208866 33208866 + Silent SNP A A G novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . ITGB1-1084 NM_002211 exon11 c.T1416C p.P472P ACTTTCAGGGATG . 172 4 187 0 . 225 224 1 0 0 IFIT5 24138 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 91177427 91177427 + Silent SNP A A G novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . IFIT5-90 NM_012420 exon2 c.A471G p.Q157Q TTATCAAAAGGCT . 102 24 94 0 . 13 10 3 0 0 DMBT1 1755 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 124352013 124352013 + Missense_Mutation SNP G G A novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . DMBT1-494 NM_007329 exon20 c.G2402A p.R801H ATGTGCGCTGCTC . 321 21 254 1 . 0 0 0 0 0 MUC5B 727897 hgsc.bcm.edu 37 11 1268402 1268402 + Missense_Mutation SNP G G A novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . . NM_002458 exon31 c.G10292A p.S3431N CCAGCAGCACAGT . 22 6 11 0 . 0 0 0 0 0 MS4A8 83661 hgsc.bcm.edu;bcgsc.ca 37 11 60482801 60482801 + Missense_Mutation SNP A A G novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . . NM_031457 exon7 c.A667G p.N223D TATCCAAACATCT . 75 6 79 0 . 0 0 0 0 0 HNRNPUL2 221092 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 62489600 62489600 + Nonsense_Mutation SNP C C A novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . HNRNPUL2-22 NM_001079559 exon7 c.G1348T p.E450X ATTCCTCTATGGT . 101 25 74 0 . 0 0 0 0 0 RAD51AP1 10635 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 4657343 4657343 + Missense_Mutation SNP A A T novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . RAD51AP1-227 NM_001130862 exon6 c.A456T p.L152F TTATTTAGGTAAG . 108 46 82 0 . 0 0 0 0 0 LMBR1L 55716 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 49500795 49500795 + Missense_Mutation SNP G G T novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . LMBR1L-227 NM_018113 exon2 c.C106A p.L36I GGCAGAGGATGTA . 317 136 219 0 . 30 11 19 0 0 TMEM19 55266 broad.mit.edu 37 12 72092800 72092800 + Missense_Mutation SNP C C A novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . TMEM19-90 NM_018279 exon5 c.C758A p.P253Q CTGCCCCGCAGTG . 184 5 178 1 . 58 58 0 0 0 PAH 5053 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 103234258 103234258 + Missense_Mutation SNP A A G novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . PAH-72 NM_000277 exon12 c.T1235C p.V412A TAGCGAACTGAGA . 144 64 140 0 . 3 0 3 0 0 HCAR2 338442 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 123187395 123187395 + Missense_Mutation SNP T T A novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . HCAR2-91 NM_177551 exon1 c.A436T p.I146F AGATGATGGCTGC . 167 36 139 0 . 2 2 0 0 0 CHRNA5 1138 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 78885562 78885562 + Missense_Mutation SNP A A C novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . CHRNA5-516 NM_000745 exon6 c.A1374C p.L458F TATATTAATACCA . 59 13 57 0 . 1 1 0 0 0 ADCY9 115 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 4029168 4029168 + Silent SNP G G A novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . ADCY9-139 NM_001116 exon8 c.C2628T p.P876P CAGTGCGGGAAGC . 157 30 140 0 . 40 25 15 0 0 ACSM3 6296 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 20787239 20787239 + Silent SNP C C T novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . ACSM3-91 NM_005622 exon3 c.C298T p.L100L GAGGAACTGGGAT . 248 53 188 0 . 31 16 15 0 0 WDR81 124997 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 17 1631524 1631524 + Missense_Mutation SNP G G A novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . WDR81-91 NM_001163809 exon1 c.G3271A p.V1091M CTCTATGTGACTG . 152 25 102 0 . 18 18 0 0 0 PELP1 27043 hgsc.bcm.edu 37 17 4575451 4575451 + Silent SNP T T C novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . PELP1-24 NM_014389 exon16 c.A2835G p.E945E TTCTTCTTCTTCC . 9 4 6 2 . 98 33 65 0 0 RNF167 26001 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 4848277 4848277 + Missense_Mutation SNP T T C novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . RNF167-226 NM_015528 exon10 c.T1019C p.L340P CCCCACTGTCCCC . 450 100 309 1 . 470 363 107 0 0 KIF1C 10749 ucsc.edu 37 17 4908297 4908297 + Splice_Site SNP T T C novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 T T . . . . Unknown Untested Somatic WXS none Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . KIF1C-92 NM_006612 exon13 c.1165+2T>C . GGAAGGTCGAGGT . 210 1 155 1 . 0 0 0 0 0 SLC16A11 162515 hgsc.bcm.edu 37 17 6946083 6946083 + Splice_Site SNP C C T novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . SLC16A11-91 NM_153357 exon4 c.419-1G>A . CAAAGCCTGCGAA . 13 9 8 2 . 0 0 0 0 0 MYO19 80179 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 34871758 34871758 + Missense_Mutation SNP T T C novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . MYO19-23 NM_001163735 exon8 c.A490G p.I164V CTGCAATCTTGTG . 74 13 54 0 . 32 21 11 0 0 DGKE 8526 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 54926211 54926211 + Missense_Mutation SNP A A G novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . DGKE-289 NM_003647 exon6 c.A1043G p.D348G AACTAGATCGGTA . 112 26 93 0 . 0 0 0 0 0 SLC14A2 8170 broad.mit.edu 37 18 43262338 43262338 + Missense_Mutation SNP C C T novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . SLC14A2-93 NM_001242692 exon21 c.C2617T p.L873F TTCCTGCTCCTGA . 530 7 514 0 . 0 0 0 0 0 STAP2 55620 hgsc.bcm.edu;broad.mit.edu 37 19 4328673 4328673 + Missense_Mutation SNP C C G novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . STAP2-90 NM_001013841 exon6 c.G589C p.G197R CGCACCCGTTGTG . 23 10 19 0 . 0 0 0 0 0 ACER1 125981 broad.mit.edu 37 19 6312191 6312191 + Missense_Mutation SNP A A G novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . ACER1-90 NM_133492 exon3 c.T319C p.C107R AATAGCAGCGGGG . 63 8 62 0 . 0 0 0 0 0 HNRNPM 4670 ucsc.edu 37 19 8527467 8527467 + Splice_Site SNP T T G novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 T T . . . . Unknown Untested Somatic WXS none Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . HNRNPM-68 NM_031203 exon3 c.336+2T>G . CAAGGGTAAGTGT . 132 1 150 0 . 0 0 0 0 0 KIF5C 3800 ucsc.edu 37 2 149799207 149799207 + Silent SNP G G A novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . KIF5C-69 NM_004522 exon7 c.G522A p.V174V GTTTGTGTCGAGC . 36 4 25 0 . 0 0 0 0 0 DIS3L2 129563 hgsc.bcm.edu 37 2 233199380 233199380 + Missense_Mutation SNP A A G rs2697798 TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . DIS3L2-136 NM_152383 exon19 c.A2329G p.I777V ATGGGCATCCTGA . 26 6 8 2 . 51 51 0 0 0 ALPI 248 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 233322816 233322816 + Missense_Mutation SNP C C T novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . ALPI-90 NM_001631 exon8 c.C965T p.P322L GGAACCCCCGCGG . 108 26 105 0 . 1 0 1 0 0 PPP1R16B 26051 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 37536822 37536822 + Nonsense_Mutation SNP G G T novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . PPP1R16B-228 NM_015568 exon10 c.G1180T p.E394X GACCAAGAGAATA . 84 14 49 0 . 0 0 0 0 0 PPP1R16B 26051 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 37536828 37536828 + Missense_Mutation SNP A A G novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . PPP1R16B-228 NM_015568 exon10 c.A1186G p.K396E GAGAATAAGGACC . 73 12 43 0 . 0 0 0 0 0 ADA 100 broad.mit.edu;bcgsc.ca 37 20 43264929 43264929 + Missense_Mutation SNP C C T novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . ADA-653 NM_000022 exon2 c.G34A p.V12M GTTCCACCTGCAA . 24 5 32 0 . 0 0 0 0 0 APOL6 80830 hgsc.bcm.edu 37 22 36055619 36055619 + Silent SNP C C G novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . APOL6-90 NM_030641 exon3 c.C1008G p.V336V GTGTGTCTGTGTG . 32 3 27 0 . 11 11 0 0 0 MICALL1 85377 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 38313744 38313744 + Missense_Mutation SNP C C T novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . MICALL1-153 NM_033386 exon4 c.C368T p.A123V GCCTTGCACCCTG . 117 28 110 0 . 22 13 9 0 0 SCAP 22937 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 47455522 47455522 + Missense_Mutation SNP C C A novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . SCAP-91 NM_012235 exon23 c.G3662T p.C1221F GAGACACAGCCCT . 163 68 127 1 . 205 79 125 1 0 PLXNB1 5364 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 48459373 48459373 + Silent SNP C C A novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . PLXNB1-293 NM_001130082 exon16 c.G3321T p.T1107T AGCCACCGTGACC . 94 20 87 0 . 131 87 44 0 0 NDUFAF3 25915 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 49059877 49059877 + Missense_Mutation SNP A A T novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . NDUFAF3-90 NM_199069 exon2 c.A176T p.Y59F CAATGTACATCGA . 106 23 66 0 . 422 295 125 2 0 DNAH1 25981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 52432935 52432935 + Silent SNP A A G novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . DNAH1-67 NM_015512 exon76 c.A12159G p.V4053V GCTGGTAGTGATG . 49 11 36 0 . 7 5 2 0 0 HRG 3273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 186383957 186383957 + Missense_Mutation SNP A A T novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . HRG-91 NM_000412 exon1 c.A137T p.Y46F ATGGCTACCTTTT . 183 76 162 1 . 0 0 0 0 0 FTMT 94033 broad.mit.edu;bcgsc.ca 37 5 121187826 121187826 + Silent SNP G G T novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . FTMT-91 NM_177478 exon1 c.G168T p.R56R CTCCCGGGACCCT . 21 6 20 0 . 0 0 0 0 0 ASCC3 10973 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 101296249 101296249 + Silent SNP T T A novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . ASCC3-96 NM_006828 exon4 c.A576T p.I192I TAGGCTTATAGTT . 70 16 67 0 . 0 0 0 0 0 SPDYE6 729597 broad.mit.edu 37 7 101988946 101988946 + Silent SNP G G A novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . SPDYE6-1 NM_001146210 exon6 c.C927T p.L309L CTTACGGAGCAAG . 1717 106 1566 1 . 47 46 1 0 0 KIAA1549 57670 hgsc.bcm.edu 37 7 138546145 138546145 + Missense_Mutation SNP A A G novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . KIAA1549-369 NM_020910 exon16 c.T4987C p.Y1663H CTGGATACCTCCC . 53 3 39 0 . 32 31 0 0 1 TTI2 80185 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 33369560 33369560 + Missense_Mutation SNP A A T novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . . NM_001265581 exon2 c.T572A p.F191Y TGTAGGAATCCTG . 363 95 353 0 . 5 2 3 0 0 TERF1 7013 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 73921183 73921183 + Missense_Mutation SNP C C T novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . TERF1-228 NM_017489 exon1 c.C62T p.A21V GGGATGCCGACCC . 46 9 52 0 . 8 4 4 0 0 PSCA 8000 hgsc.bcm.edu 37 8 143762846 143762846 + Missense_Mutation SNP C C G novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . . NM_005672 exon2 c.C127G p.R43G ACCGCGCGCATCC . 16 6 14 0 . 0 0 0 0 0 TLN1 7094 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 35698169 35698169 + Missense_Mutation SNP C C G novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . TLN1-609 NM_006289 exon56 c.G7372C p.A2458P CAGCAGCCTGGGC . 83 14 70 0 . 0 0 0 0 0 SPATA31C1 441452 broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 90536638 90536638 + Missense_Mutation SNP T T A novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . . NM_001145124 exon4 c.T1816A p.W606R CGATCCTGGCTTG . 284 87 248 1 . 0 0 0 0 0 MAOA 4128 ucsc.edu 37 X 43515619 43515619 + Silent SNP G G A novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . MAOA-194 NM_000240 exon1 c.G30A p.A10A TATCGCGGGCCAC . 34 4 33 0 . 19 19 0 0 0 MORC4 79710 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 106201626 106201626 + Missense_Mutation SNP A A G novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . MORC4-131 NM_001085354 exon11 c.T1325C p.I442T GGATCAATCTTCC . 59 32 50 0 . 10 5 5 0 0 LMO4 8543 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 87805263 87805263 + Frame_Shift_Del DEL T T - novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . LMO4-226 NM_006769 exon3 c.281delT p.I94fs . . 58 17 54 0 . 0 0 0 0 0 AGBL2 79841 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 47726183 47726183 + Frame_Shift_Del DEL G G - novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . AGBL2-92 NM_024783 exon7 c.498delC p.L166fs . . 98 24 112 0 . 0 0 0 0 0 PDGFRB 5159 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 149515196 149515213 + In_Frame_Del DEL CCGTGTCTAGCCCAGTGA CCGTGTCTAGCCCAGTGA - novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 CCGTGTCTAGCCCAGTGA CCGTGTCTAGCCCAGTGA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . PDGFRB-1499 NM_002609 exon3 c.269_286del p.90_96del . . 116 22 131 0 . 0 0 0 0 0 NOM1 64434 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 156752614 156752614 + Frame_Shift_Del DEL A A - novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . NOM1-90 NM_138400 exon4 c.1378delA p.K460fs . . 61 16 58 0 . 0 0 0 0 0 ZNF407 55628 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 18 72344119 72344120 + Frame_Shift_Ins INS - - TA novel TCGA-BQ-7062-01A-11D-1961-08 TCGA-BQ-7062-11A-01D-1961-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq 8017a612-f39d-4ab8-bd99-55f6568c4bd8 46dc5965-f675-4a6a-8374-017cd8873bb9 . ZNF407-92 NM_001146190 exon1 c.1144_1145insTA p.L382fs . . 94 26 75 0 . 0 0 0 0 0