Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PEX14	5195	hgsc.bcm.edu	37	1	10535061	10535061	+	Splice_Site	SNP	T	T	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	PEX14-90	NM_004565	exon1	c.36+2T>C	.	GCCAGGTAAGGGG	.	15	2	29	0	.	0	0	0	0	0
TRIM63	84676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	26386776	26386776	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	TRIM63-226	NM_032588	exon4	c.A578T	p.D193V	CGGGAATCCTCCA	.	125	25	156	0	.	0	0	0	0	0
SERINC2	347735	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	31897695	31897695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SERINC2-90	NM_001199038	exon4	c.G394A	p.D132N	AGCCGGGACCCCC	.	33	6	22	0	.	202	112	90	0	0
KIF2C	11004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	45206651	45206651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	KIF2C-228	NM_006845	exon2	c.C137A	p.A46E	AATGGGCAGAAGG	.	75	8	69	0	.	0	0	0	0	0
ST7L	54879	bcgsc.ca	37	1	113119657	113119657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ST7L-90	NM_138728	exon11	c.C1196T	p.A399V	TCCACGGCATTAA	.	78	5	82	0	.	10	10	0	0	0
ANKRD35	148741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	145561665	145561665	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ANKRD35-95	NM_144698	exon10	c.C1353T	p.T451T	ACAGACCTTTGGC	.	97	22	113	0	.	0	0	0	0	0
HRNR	388697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152191362	152191362	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	HRNR-93	NM_001009931	exon3	c.C2743T	p.R915W	AAGACCGACCGGA	.	250	52	304	1	.	0	0	0	0	0
FLAD1	80308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154961016	154961016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	FLAD1-93	NM_025207	exon2	c.G808A	p.G270R	ATGAAGGGACTAT	.	69	9	69	0	.	36	27	9	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228522554	228522554	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	OBSCN-403	NM_001271223	exon72	c.A18997G	p.R6333G	CTGGAGAGGTTCA	.	10	2	8	0	.	0	0	0	0	0
SPRTN	83932	hgsc.bcm.edu	37	1	231474336	231474336	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	.	NM_032018	exon1	c.C207T	p.S69S	GTGGAGCGTGCGA	.	159	15	187	0	.	10	5	5	0	0
AKR1C3	8644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	5139633	5139633	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	AKR1C3-515	NM_001253908	exon3	c.C260G	p.S87C	TTTGGTCCACTTT	.	134	28	137	0	.	0	0	0	0	0
IL15RA	3601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	6008174	6008174	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	IL15RA-90	NM_001256765	exon3	c.A475G	p.T159A	ACTCCGTCAGGCT	.	40	6	65	0	.	6	5	1	0	0
BMS1	9790	ucsc.edu	37	10	43315737	43315737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	BMS1-93	NM_014753	exon16	c.G2634T	p.E878D	GTATGAGGGTTTT	.	181	4	190	4	.	109	72	37	0	0
TYSND1	219743	hgsc.bcm.edu	37	10	71906010	71906010	+	Silent	SNP	C	C	G	rs11549688		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	TYSND1-135	NM_173555	exon1	c.G333C	p.A111A	GAGGCTCGCGCAC	.	4	3	2	0	C|0.964;G|0.036	1	1	0	0	0
VDAC2	7417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	76980587	76980587	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	VDAC2-93	NM_001184783	exon8	c.C488T	p.A163V	GACCTGCAATCCA	.	129	20	165	0	.	284	164	120	0	0
BTAF1	9044	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	93773747	93773747	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	BTAF1-92	NM_003972	exon32	c.A4545T	p.K1515N	ACCTAAAATTATT	.	184	23	262	0	.	7	7	0	0	0
MMS19	64210	broad.mit.edu	37	10	99222420	99222420	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	.	NM_022362	exon20	c.G1932A	p.L644L	TTTTCTCAGAACT	.	36	4	58	0	.	25	18	7	0	0
PSD	5662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	104176443	104176443	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	PSD-272	NM_001270965	exon3	c.C353G	p.P118R	GGAGCAGGTAGCC	.	81	17	90	0	.	0	0	0	0	0
BRSK2	9024	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	1459605	1459605	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	BRSK2-333	NM_001256630	exon3	c.G394A	p.E132K	GTTTATGAAAACA	.	127	15	136	0	.	0	0	0	0	0
FBXO3	26273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	33770334	33770334	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	FBXO3-227	NM_012175	exon9	c.C1037A	p.P346H	ACTCCAGGTCCTT	.	79	17	103	0	.	0	0	0	0	0
ACY3	91703	hgsc.bcm.edu;broad.mit.edu	37	11	67412339	67412339	+	Silent	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ACY3-90	NM_080658	exon7	c.T636C	p.G212G	GGCCGTACCTGTG	.	24	3	21	0	.	0	0	0	0	0
USP5	8078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6968684	6968684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	USP5-659	NM_003481	exon9	c.C1109T	p.T370I	ACCCTACCCAGGA	.	116	27	124	0	.	44	27	17	0	0
ATF7IP	55729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	14613823	14613823	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ATF7IP-252	NM_018179	exon9	c.C2553T	p.P851P	TGTGCCCAGTCCT	.	197	27	217	1	.	13	8	5	0	0
EIF4B	1975	hgsc.bcm.edu;broad.mit.edu	37	12	53431279	53431279	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	EIF4B-568	NM_001417	exon11	c.C1393T	p.P465S	AAACCTCCCAAAC	.	58	7	70	0	.	396	248	148	0	0
IRS2	8660	hgsc.bcm.edu	37	13	110435756	110435756	+	Missense_Mutation	SNP	C	C	G	rs201499247		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	IRS2-1334	NM_003749	exon1	c.G2645C	p.G882A	CGCTGGCCCAAGA	.	10	5	1	1	.	0	0	0	0	0
CGRRF1	10668	ucsc.edu	37	14	55005042	55005042	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	CGRRF1-91	NM_006568	exon6	c.G940C	p.E314Q	GTTCAGGAATCTT	.	87	4	79	0	.	16	14	2	0	0
GPR135	64582	hgsc.bcm.edu	37	14	59931931	59931931	+	Missense_Mutation	SNP	T	T	G	rs1752428		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	GPR135-90	NM_022571	exon1	c.A14C	p.Q5P	GGCGGCTGCGGCT	.	4	4	1	1	T|0.531;G|0.469	0	0	0	0	0
SYNE2	23224	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64633998	64633998	+	Silent	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SYNE2-164	NM_182914	exon91	c.G16653A	p.L5551L	ACATTTGAATGAA	.	57	5	79	0	.	16	8	8	0	0
TRIP11	9321	ucsc.edu;bcgsc.ca	37	14	92480875	92480875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	TRIP11-1400	NM_004239	exon7	c.G870A	p.M290I	TTTTTGCATCTCA	.	30	4	34	0	.	1	1	0	0	0
CLMN	79789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	95670344	95670344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	CLMN-90	NM_024734	exon9	c.G1342A	p.G448R	GGCTCCCTTCAAA	.	102	22	109	0	.	16	11	5	0	0
SPTBN5	51332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42149779	42149779	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SPTBN5-91	NM_016642	exon50	c.G8251C	p.A2751P	CACAGGCCTTCTG	.	23	8	21	0	.	0	0	0	0	0
SPG11	80208	hgsc.bcm.edu	37	15	44861660	44861660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SPG11-95	NM_025137	exon35	c.A6521G	p.Y2174C	AATATGTATGTCA	.	19	2	32	0	.	36	36	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	4	4	1	1	T|0.007;C|0.993	3	0	3	0	0
SALL1	6299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	51172851	51172851	+	Silent	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SALL1-98	NM_002968	exon2	c.T3282C	p.H1094H	AGAAACATGCACG	.	123	18	96	0	.	45	25	20	0	0
SLC38A7	55238	hgsc.bcm.edu;broad.mit.edu	37	16	58713827	58713827	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SLC38A7-69	NM_018231	exon3	c.G204A	p.G68G	GAGTAACCCTGCA	.	57	8	50	1	.	6	5	1	0	0
FAM65A	79567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67577079	67577079	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	FAM65A-92	NM_001193523	exon13	c.T2450A	p.L817Q	GGGCCCTAATGGC	.	40	14	39	0	.	39	17	22	0	0
ZFHX3	463	hgsc.bcm.edu	37	16	72821615	72821615	+	Silent	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZFHX3-72	NM_006885	exon10	c.C10560T	p.G3520G	GCCGCCGCCACCG	.	70	7	53	1	.	2	2	0	0	0
ZZEF1	23140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3919676	3919676	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZZEF1-93	NM_015113	exon49	c.G8086T	p.G2696X	CCATTCCTGGCTC	.	162	39	154	0	.	14	14	0	0	0
ZFP3	124961	hgsc.bcm.edu	37	17	4995909	4995909	+	Silent	SNP	T	T	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZFP3-90	NM_153018	exon2	c.T1110C	p.C370C	GGAATGTGGGAAG	.	72	4	85	0	.	0	0	0	0	0
SOX15	6665	hgsc.bcm.edu	37	17	7492829	7492829	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SOX15-135	NM_006942	exon1	c.T166C	p.F56L	CCATGAACGCGTT	.	32	2	35	0	.	0	0	0	0	0
WIPF2	147179	hgsc.bcm.edu;bcgsc.ca	37	17	38420806	38420806	+	Silent	SNP	A	A	G	rs139121244		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	WIPF2-93	NM_133264	exon5	c.A378G	p.P126P	GCCTCCAGTATCT	.	151	35	168	0	A|1.000;G|0.000	7	7	0	0	0
KRT37	8688	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39577782	39577782	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	KRT37-91	NM_003770	exon6	c.G1078C	p.A360P	TCTGGGCCAGCTC	.	101	13	89	0	.	0	0	0	0	0
MED13	9969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	60023946	60023946	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	MED13-136	NM_005121	exon30	c.G6408C	p.Q2136H	ATTGTACTGTTCC	.	77	24	49	0	.	19	7	12	0	0
RNF157	114804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	74163165	74163165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	RNF157-228	NM_052916	exon5	c.G486T	p.Q162H	CTTGTACTGCACA	.	219	29	215	0	.	7	4	3	0	0
BIRC5	332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	76212806	76212806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	BIRC5-1083	NM_001012271	exon4	c.G352A	p.E118K	TTTGAAGAATTAA	.	117	29	126	0	.	0	0	0	0	0
APCDD1	147495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	10471914	10471914	+	Silent	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	APCDD1-90	NM_153000	exon3	c.G630A	p.Q210Q	ACTTCAGCTCATC	.	219	38	271	0	.	1	0	1	0	0
CEP192	55125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	13071144	13071144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	CEP192-27	NM_032142	exon28	c.G5281T	p.D1761Y	TGCTTAGATATTC	.	61	14	56	0	.	2	2	0	0	0
ZNF519	162655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	14105675	14105675	+	Silent	SNP	T	T	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF519-90	NM_145287	exon3	c.A864G	p.G288G	TTTCTCTCCAGTA	.	83	18	78	0	.	12	11	1	0	0
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	21451430	21451430	+	Silent	SNP	G	G	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	LAMA3-100	NM_001127717	exon38	c.G4803T	p.V1601V	CCCAGTGTCTAGG	.	85	14	112	0	.	0	0	0	0	0
ZNF521	25925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	22805629	22805629	+	Silent	SNP	G	G	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF521-275	NM_015461	exon4	c.C2253G	p.V751V	CCTATAGACTTTC	.	83	16	79	0	.	0	0	0	0	0
KIAA1328	57536	broad.mit.edu	37	18	34802114	34802114	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	KIAA1328-90	NM_020776	exon10	c.G1658C	p.R553P	CAACCCGGAAGAA	.	14	6	12	0	.	0	0	0	0	0
ADNP2	22850	broad.mit.edu	37	18	77896690	77896690	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ADNP2-140	NM_014913	exon4	c.T3394A	p.X1132K	GAACCATAAAACT	.	14	7	22	2	.	10	10	0	0	0
ZNF430	80264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	21240780	21240780	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF430-516	NM_025189	exon5	c.C1666G	p.L556V	TCAAACCTTATTG	.	39	10	49	0	.	3	3	0	0	0
DPY19L3	147991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	32930113	32930113	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	DPY19L3-72	NM_001172774	exon7	c.T692G	p.L231R	ATTTCCTGAGACC	.	80	15	124	0	.	4	2	2	0	0
SERTAD1	29950	hgsc.bcm.edu;ucsc.edu	37	19	40928862	40928862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SERTAD1-226	NM_013376	exon2	c.C592T	p.P198S	CCTCAGGGCCTGG	.	15	3	16	0	.	50	36	14	0	0
CD177	57126	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	43858482	43858482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	CD177-22	.	.	.	.	GCCGCCAGGAGGA	.	82	14	122	0	.	1	1	0	0	0
FUT2	2524	hgsc.bcm.edu;broad.mit.edu	37	19	49206557	49206557	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	FUT2-90	NM_001097638	exon2	c.A344C	p.H115P	TGCTGCACAGCGC	.	84	6	106	1	.	0	0	0	0	0
ZNF473	25888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50550199	50550199	+	Silent	SNP	G	G	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF473-91	NM_015428	exon5	c.G2499T	p.L833L	GCACCTGAGAGTT	.	79	18	77	0	.	1	1	0	0	0
SIGLEC12	89858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52004707	52004707	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SIGLEC12-96	NM_053003	exon1	c.A281T	p.H94L	AGGAGGTGGAATC	.	243	30	275	1	.	22	22	0	0	0
ZNF28	7576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53303801	53303801	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF28-91	NM_006969	exon4	c.C1297G	p.H433D	CAGTGTGAATTAT	.	200	30	289	0	.	3	2	1	0	0
ZNF761	388561	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	53958007	53958007	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF761-91	NM_001008401	exon7	c.T246G	p.N82K	TCACAATGGAGAT	.	100	9	111	1	.	2	0	2	0	0
ADCY3	109	bcgsc.ca	37	2	25141697	25141697	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ADCY3-94	NM_004036	exon1	c.C160T	p.R54W	TCAGCCGCATGAA	.	80	5	67	0	.	0	0	0	0	0
LOXL3	84695	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74761483	74761483	+	Silent	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	LOXL3-226	NM_032603	exon11	c.C1899T	p.H633H	AGCTTTGTGGCCC	.	121	20	117	0	.	3	3	0	0	0
POLR1A	25885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	86279952	86279952	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	POLR1A-93	NM_015425	exon16	c.G2380A	p.G794S	TGAAGCCTCTGTA	.	76	9	91	1	.	0	0	0	0	0
TUBA3D	113457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	132236969	132236969	+	Silent	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	TUBA3D-44	NM_080386	exon3	c.G315A	p.R105R	CGCCAGGGGCCAT	.	256	40	273	0	.	0	0	0	0	0
FIGN	55137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	164466515	164466515	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	FIGN-156	NM_018086	exon3	c.T1827A	p.F609L	CATCAGAAATTCG	.	105	23	153	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179650403	179650403	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	TTN-636	NM_001267550	exon15	c.A2437T	p.S813C	GAGGGCTAGCTGT	.	88	16	94	0	.	0	0	0	0	0
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	238303376	238303376	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	COL6A3-526	NM_004369	exon3	c.T563C	p.I188T	CTTGCTATTTCTT	.	85	13	122	0	.	1	1	0	0	0
RNPEPL1	57140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	241516157	241516157	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	RNPEPL1-154	NM_018226	exon9	c.C1716T	p.L572L	CCGGCTCCTGGAT	.	83	11	99	0	.	62	42	20	0	0
NCOA6	23054	hgsc.bcm.edu;broad.mit.edu	37	20	33345744	33345744	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	NCOA6-292	NM_014071	exon7	c.G807A	p.Q269Q	CTGCTGCTGTTGT	.	46	4	73	2	.	5	5	0	0	0
WFDC12	128488	broad.mit.edu;bcgsc.ca	37	20	43752864	43752864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	WFDC12-90	NM_080869	exon2	c.G122A	p.C41Y	TTGAAGCAGCGTA	.	126	7	114	0	.	13	10	3	0	0
LAMA5	3911	hgsc.bcm.edu	37	20	60887506	60887506	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	LAMA5-93	NM_005560	exon68	c.A9310C	p.K3104Q	GCCGCTTGAGGTC	.	37	2	23	0	.	71	71	0	0	0
SLC2A4RG	56731	hgsc.bcm.edu;broad.mit.edu	37	20	62374341	62374341	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SLC2A4RG-90	NM_020062	exon8	c.T1162C	p.X388Q	CTGGACTAAGTCC	.	23	6	22	0	.	67	41	26	0	0
SCAP	22937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47456625	47456625	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SCAP-91	NM_012235	exon19	c.G3102A	p.L1034L	GGTCTCCAAGGAG	.	69	17	65	0	.	44	32	12	0	0
C3orf18	51161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50602964	50602964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	C3orf18-279	NM_016210	exon3	c.C167T	p.T56M	CCGGCCGTGCCAC	.	65	13	67	0	.	1	0	1	0	0
BBX	56987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	107491690	107491690	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	BBX-94	NM_001142568	exon11	c.G1122C	p.E374D	TTTTGAGGCATTG	.	109	48	99	0	.	7	2	5	0	0
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	184922367	184922367	+	Silent	SNP	G	G	A	rs149294851	alternate_allele	TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	EHHADH-93	NM_001966	exon6	c.C747T	p.I249I	CTTCTTGATGCCC	.	289	88	234	0	G|1.000;C|0.000	32	5	27	0	0
MFSD10	10227	hgsc.bcm.edu	37	4	2934901	2934901	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	MFSD10-68	NM_001120	exon3	c.C304G	p.L102V	CACACAGAAACTG	.	54	9	38	0	.	64	26	38	0	0
JAKMIP1	152789	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	6066676	6066676	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	JAKMIP1-292	NM_001099433	exon9	c.G1362A	p.L454L	TTCGGACAACGTT	.	92	6	125	0	.	0	0	0	0	0
BOD1L1	259282	broad.mit.edu;bcgsc.ca	37	4	13601157	13601157	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	.	NM_148894	exon10	c.T7367C	p.L2456P	TTTATGAGGTGTA	.	107	5	109	0	.	5	4	1	0	0
RELL1	768211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	37650975	37650975	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	RELL1-68	NM_001085399	exon2	c.A236T	p.H79L	AGCAGGTGGCAAA	.	258	29	274	1	.	16	8	8	0	0
DMP1	1758	broad.mit.edu	37	4	88583660	88583660	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	DMP1-132	NM_004407	exon6	c.G730A	p.E244K	TCTGGAGAAAACA	.	45	3	32	0	.	0	0	0	0	0
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	104070327	104070327	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	CENPE-277	NM_001813	exon27	c.T3635A	p.F1212Y	GTTTCAAATGACT	.	74	17	89	1	.	1	1	0	0	0
KIAA0825	285600	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	93856481	93856481	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	KIAA0825-91	NM_173665	exon5	c.T442G	p.S148A	CAACAGAATGAAG	.	60	15	55	0	.	0	0	0	0	0
HSD17B4	3295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	118824931	118824931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	HSD17B4-92	NM_001199291	exon10	c.C742T	p.L248F	CTTGTCCTTTGGC	.	186	61	87	0	.	116	49	67	0	0
ZNF608	57507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	123980011	123980011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF608-229	NM_020747	exon5	c.C4049T	p.P1350L	GGGTAAGGATAAG	.	105	17	86	0	.	16	12	4	0	0
GPR116	221395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	46867766	46867766	+	Missense_Mutation	SNP	C	C	A	rs145334563	byfrequency;alternate_allele	TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	GPR116-91	NM_015234	exon3	c.G157T	p.V53F	ACATACCGGCTCG	.	100	22	119	0	C|0.999;T|0.001	0	0	0	0	0
COL9A1	1297	hgsc.bcm.edu;bcgsc.ca	37	6	70944522	70944522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	COL9A1-94	NM_001851	exon34	c.G2234T	p.G745V	GGCAGGCCGGTGG	.	53	5	55	0	.	0	0	0	0	0
RFX6	222546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	117249981	117249981	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	RFX6-93	NM_173560	exon18	c.C2458A	p.Q820K	GTGAATCAGCACG	.	172	32	194	1	.	0	0	0	0	0
HEBP2	23593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	138727187	138727187	+	Silent	SNP	C	C	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	HEBP2-90	NM_014320	exon3	c.C318A	p.T106T	CATTACCATTTCC	.	197	36	245	1	.	138	56	82	0	0
PMS2	5395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	6035170	6035170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	PMS2-1083	NM_000535	exon8	c.G898A	p.A300T	CCTTTGCTGGGTC	.	104	31	95	0	.	0	0	0	0	0
POU6F2	11281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	39446255	39446255	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	POU6F2-90	NM_007252	exon7	c.C942T	p.S314S	GAGCTCCATAGCA	.	99	31	103	0	.	0	0	0	0	0
ZMIZ2	83637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44805818	44805818	+	Silent	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZMIZ2-137	NM_031449	exon17	c.C2298G	p.P766P	CACGCCCAGCACC	.	138	19	113	0	.	60	36	24	0	0
ABCB4	5244	hgsc.bcm.edu;bcgsc.ca	37	7	87051487	87051487	+	Silent	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ABCB4-96	NM_018850	exon18	c.T2266C	p.L756L	AAATCAAAGAGAA	.	58	4	59	0	.	3	3	0	0	0
CYP3A43	64816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99454477	99454477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	CYP3A43-92	NM_057096	exon9	c.C820A	p.Q274K	TTTCAACAGATGA	.	188	18	215	0	.	0	0	0	0	0
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100361742	100361742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZAN-142	.	.	.	.	TGTGCACACACAT	.	50	21	49	0	.	0	0	0	0	0
CPA4	51200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	129962495	129962495	+	Silent	SNP	T	T	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	CPA4-515	NM_016352	exon11	c.T1245C	p.H415H	GGAGCATGTGCGG	.	188	39	159	0	.	4	4	0	0	0
CPA4	51200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	129962499	129962499	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	CPA4-515	NM_016352	exon11	c.C1249T	p.R417W	CATGTGCGGGACA	.	185	42	154	0	.	2	2	0	0	0
AKR1B15	441282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	134260620	134260620	+	Silent	SNP	C	C	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	AKR1B15-23	NM_001080538	exon8	c.C684T	p.C228C	GTACTGCCACTCC	.	105	20	129	0	.	312	307	5	0	0
SVOPL	136306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	138281232	138281232	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SVOPL-68	NM_001139456	exon14	c.C1397T	p.S466L	ACAGATGAGAAGA	.	107	14	80	0	.	1	0	1	0	0
ZNF783	0	broad.mit.edu	37	7	148979208	148979208	+	Missense_Mutation	SNP	G	G	A	rs201974383	alternate_allele	TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	.	NM_001195220	exon6	c.G1415A	p.G472D	ACTGCGGCAAGGC	.	46	3	40	0	.	2	2	0	0	0
ZNF777	27153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	149152518	149152518	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF777-136	NM_015694	exon2	c.T596A	p.L199Q	GCCTCCAGCTTCC	.	209	46	204	0	.	15	8	7	0	0
USP17L2	377630	hgsc.bcm.edu	37	8	11996075	11996075	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	USP17L2-435	NM_201402	exon1	c.G195C	p.R65S	CTTCTTCCTGGGA	.	9	2	6	1	.	0	0	0	0	0
TSNARE1	203062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	143381927	143381927	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	TSNARE1-90	NM_145003	exon10	c.G1210C	p.E404Q	CCTGCTCCTGGCC	.	103	14	109	0	.	9	8	1	0	0
HRCT1	646962	broad.mit.edu	37	9	35906559	35906559	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	HRCT1-22	NM_001039792	exon1	c.A275C	p.H92P	ACCACCACCCCCG	.	24	13	44	14	.	3	3	0	0	0
TSTD2	158427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	100368460	100368460	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	TSTD2-92	NM_139246	exon7	c.C919A	p.L307I	CAAGAAGGATAGT	.	72	9	103	0	.	4	4	0	0	0
FKBP15	23307	hgsc.bcm.edu	37	9	115973833	115973833	+	Silent	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	FKBP15-25	NM_015258	exon2	c.T93C	p.A31A	GCCAGCAGCTGCC	.	27	2	24	0	.	6	6	0	0	0
HSPA5	3309	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	128001454	128001454	+	Silent	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	HSPA5-230	NM_005347	exon5	c.T762C	p.G254G	TTCTCCACCCAGA	.	52	7	68	0	.	488	253	230	5	0
GARNL3	84253	hgsc.bcm.edu	37	9	130149608	130149608	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	GARNL3-516	NM_032293	exon25	c.A2525G	p.E842G	TGGGGGAAGGTGA	.	39	2	55	0	.	0	0	0	0	0
PKN3	29941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131476565	131476565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	PKN3-521	NM_013355	exon11	c.C1402A	p.P468T	AGCTCCCCGAGCA	.	240	42	243	0	.	4	2	2	0	0
ZER1	10444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131512978	131512978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZER1-91	NM_006336	exon8	c.T1276C	p.Y426H	AGCGGTACTCGGA	.	100	16	82	0	.	27	19	8	0	0
POLA1	5422	hgsc.bcm.edu	37	X	24906193	24906193	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	POLA1-229	NM_016937	exon35	c.C4100G	p.T1367S	CCCGAACTGGGCC	.	60	3	56	0	.	6	6	0	0	0
DDX3X	1654	hgsc.bcm.edu	37	X	41200810	41200810	+	Silent	SNP	T	T	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	DDX3X-715	NM_001193416	exon4	c.T225C	p.R75R	ATCTCGTAGTGAT	.	60	3	65	0	.	86	86	0	0	0
ZXDB	158586	hgsc.bcm.edu;broad.mit.edu	37	X	57619097	57619097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZXDB-130	NM_007157	exon1	c.G616A	p.G206R	CAGCCCGGGTGTC	.	20	3	20	0	.	2	1	1	0	0
KIF4A	24137	broad.mit.edu	37	X	69595071	69595071	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	KIF4A-134	NM_012310	exon17	c.G1796A	p.R599H	GCCGCCGCAAACG	.	34	3	34	0	.	0	0	0	0	0
PAK3	5063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	110366494	110366494	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	PAK3-1043	NM_001128166	exon3	c.G163A	p.G55R	CCAGGAGGAGGGG	.	47	15	50	0	.	1	0	1	0	0
WDR47	22911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	109554105	109554105	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	WDR47-91	NM_001142550	exon5	c.584delA	p.K195fs	.	.	342	55	435	0	.	0	0	0	0	0
MMRN2	79812	broad.mit.edu;bcgsc.ca	37	10	88705024	88705026	+	Frame_Shift_Del	DEL	ATC	ATC	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	ATC	ATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	MMRN2-153	NM_024756	exon4	c.401_402del	p.134_134del	CATGGAATCTGCA	.	61	8	69	0	.	0	0	0	0	0
C16orf92	146378	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	30035201	30035219	+	In_Frame_Del	DEL	ACTCAGGTATGAACCAGCT	ACTCAGGTATGAACCAGCT	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	ACTCAGGTATGAACCAGCT	ACTCAGGTATGAACCAGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	C16orf92-68	NM_001109660	exon2	c.284_289del	p.95_97del	.	.	73	15	82	0	.	0	0	0	0	0
WIPF2	147179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	38420795	38420800	+	In_Frame_Del	DEL	CCAAGG	CCAAGG	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	CCAAGG	CCAAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	WIPF2-93	NM_133264	exon5	c.367_372del	p.123_124del	.	.	141	24	163	0	.	0	0	0	0	0
SCRN2	90507	broad.mit.edu	37	17	45916884	45916884	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SCRN2-91	NM_138355	exon4	c.482delT	p.F161fs	AGCAGGAAGGTGC	.	198	11	185	0	.	0	0	0	0	0
ZNF227	7770	broad.mit.edu;bcgsc.ca	37	19	44739499	44739499	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ZNF227-91	NM_182490	exon6	c.916delT	p.F306fs	GATTGCTTCAATA	.	82	9	112	0	.	0	0	0	0	0
ADCY5	111	broad.mit.edu	37	3	123166392	123166392	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	ADCY5-94	NM_183357	exon1	c.1001delT	p.F334fs	ATGAAGAACACGG	.	36	8	24	0	.	0	0	0	0	0
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	89953910	89953915	+	In_Frame_Del	DEL	AAATCA	AAATCA	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	AAATCA	AAATCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	GPR98-103	NM_032119	exon21	c.4567_4572del	p.1523_1524del	.	.	126	30	124	0	.	0	0	0	0	0
DMTF1	9988	hgsc.bcm.edu;broad.mit.edu	37	7	86808890	86808890	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	DMTF1-91	NM_001142327	exon8	c.549delC	p.I183fs	.	.	51	10	39	0	.	0	0	0	0	0
VIPR2	7434	broad.mit.edu;bcgsc.ca	37	7	158902583	158902587	+	Frame_Shift_Del	DEL	GTGAT	GTGAT	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	GTGAT	GTGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	VIPR2-91	NM_003382	exon3	c.175_179del	p.59_60del	CAGCACGTGATGT	.	111	7	139	0	.	0	0	0	0	0
OR1N2	138882	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	125316283	125316283	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	OR1N2-72	NM_001004457	exon1	c.835delC	p.P279fs	.	.	140	21	115	0	.	0	0	0	0	0
SLC31A1	1317	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	116018468	116018469	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	SLC31A1-90	NM_001859	exon2	c.40_41insC	p.S14fs	.	.	118	18	134	0	.	0	0	0	0	0
FCAR	2204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55401195	55401196	+	Missense_Mutation	DNP	TG	TG	GT	novel		TCGA-DW-7838-01A-11D-2136-08	TCGA-DW-7838-10A-01D-2136-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7897a3f-6f47-41e8-b9b6-29bceb9d3c54	a0033479-cc47-403c-a95a-2fca2634ddbf	.	FCAR		exon5	c.G831T	p.L277C	AGGATTGACCTTT	.	228.0	36.0	207.0	0.0	.	0	0	0	0	0