Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
KIAA1751	85452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1887063	1887063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	KIAA1751-69	NM_001080484	exon18	c.G2243A	p.G748E	TCAGCCCCCTGGA	.	149	38	149	0	.	0	0	0	0	0
CAMTA1	23261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	7721912	7721912	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	CAMTA1-520	NM_015215	exon8	c.G791C	p.C264S	GCCTCTGCACCGG	.	23	9	34	0	.	0	0	0	0	0
RERE	473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	8424145	8424145	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	RERE-515	NM_012102	exon16	c.A1711T	p.S571C	TCATGCTATGCTT	.	100	42	84	0	.	20	13	7	0	0
ECE1	1889	hgsc.bcm.edu	37	1	21546592	21546592	+	Silent	SNP	G	G	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ECE1-93	NM_001397	exon19	c.C2169G	p.S723S	TTCGTGGGAGCTC	.	60	3	63	0	.	40	40	0	0	0
HMGCL	3155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	24147039	24147039	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	HMGCL-90	NM_000191	exon2	c.T105G	p.I35M	TTCCACAATTTTC	.	149	53	133	0	.	29	11	18	0	0
C1orf63	57035	bcgsc.ca	37	1	25573160	25573160	+	Missense_Mutation	SNP	C	C	A	rs201238140	alternate_allele	TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	C1orf63-91	NM_020317	exon2	c.G295T	p.G99W	TGAACCCGTAGCG	.	67	5	53	0	C|0.999;T|0.000	13	13	0	0	0
PHACTR4	65979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	28785697	28785697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PHACTR4-90	NM_023923	exon2	c.T148C	p.F50L	TCAGGCTTTGGCA	.	84	28	93	0	.	5	1	4	0	0
PUM1	9698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	31406096	31406096	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PUM1-92	NM_001020658	exon22	c.T3529A	p.L1177I	GCCCTAAGTCAAC	.	162	63	178	0	.	46	28	18	0	0
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	62582269	62582269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	INADL-94	NM_176877	exon36	c.T4721C	p.L1574S	GGAGATTGATTCA	.	47	20	53	1	.	5	1	4	0	0
FNBP1L	54874	broad.mit.edu	37	1	93996339	93996339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	FNBP1L-227	NM_001164473	exon7	c.C538T	p.H180Y	CGTACGCATATGG	.	20	7	10	0	.	4	1	3	0	0
RBM15	64783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110883658	110883658	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	RBM15-661	NM_022768	exon1	c.C1631G	p.T544S	CCTTGACTCATTA	.	143	57	107	0	.	0	0	0	0	0
ADCY10	55811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	167870956	167870956	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ADCY10-493	NM_018417	exon5	c.A380T	p.H127L	AATCCATGGATCT	.	237	83	198	0	.	0	0	0	0	0
IKBKE	9641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	206651658	206651658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	IKBKE-1061	NM_001193322	exon9	c.A968G	p.H323R	TGCACCACATCTA	.	241	66	247	0	.	4	2	2	0	0
SYT14	255928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	210267875	210267875	+	Silent	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SYT14-92	NM_001146264	exon6	c.T786C	p.S262S	AGAAAGTTTTCAT	.	66	26	71	0	.	0	0	0	0	0
EPRS	2058	hgsc.bcm.edu	37	1	220180553	220180553	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	EPRS-92	NM_004446	exon14	c.A1733C	p.K578T	TGTATTTTTGTAA	.	37	2	36	0	.	0	0	0	0	0
KIAA1217	56243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	24835172	24835172	+	Silent	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	KIAA1217-98	NM_019590	exon21	c.T5751C	p.H1917H	CATCCATACTCCC	.	99	51	111	0	.	57	26	31	0	0
ARMC4	55130	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	28270470	28270470	+	Silent	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ARMC4-96	NM_018076	exon7	c.A861G	p.K287K	TGAACCTTTTCTC	.	127	8	170	0	.	0	0	0	0	0
CUL2	8453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	35324145	35324145	+	Silent	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	CUL2-229	NM_001198778	exon10	c.C1014A	p.I338I	ATCATGGATGTGG	.	63	21	59	0	.	3	1	2	0	0
ALOX5	240	hgsc.bcm.edu;broad.mit.edu	37	10	45869784	45869784	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ALOX5-228	NM_000698	exon1	c.C57A	p.D19E	CACTGACGACTAC	.	12	6	10	0	.	9	5	4	0	0
GRID1	2894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	87407050	87407050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	GRID1-142	NM_017551	exon13	c.A2102G	p.Q701R	CTGTCCTGCTCCA	.	427	157	418	0	.	0	0	0	0	0
NRAP	4892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	115411657	115411657	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	NRAP-522	NM_001261463	exon7	c.A580G	p.K194E	CTCTCTTATACTC	.	71	21	66	0	.	0	0	0	0	0
DMBT1	1755	bcgsc.ca	37	10	124351971	124351971	+	Missense_Mutation	SNP	G	G	A	rs199833346		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	DMBT1-494	NM_007329	exon20	c.G2360A	p.R787Q	ATGCCCGGTTTGG	.	363	10	318	1	G|0.999;A|0.000	0	0	0	0	0
IFITM1	8519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	315058	315058	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	.	NM_003641	exon2	c.C323G	p.S108C	TCGGCTCTGTGAC	.	122	35	114	0	.	22	20	2	0	0
SIGIRR	59307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	407548	407548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SIGIRR-90	NM_001135053	exon6	c.T502C	p.Y168H	AGACGTAGGCGTC	.	40	10	21	0	.	30	18	12	0	0
TRIM3	10612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6479061	6479061	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TRIM3-714	NM_001248006	exon4	c.G380A	p.C127Y	GCCTCACAGTAAA	.	118	41	123	1	.	1	1	0	0	0
ALKBH3	221120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	43905565	43905565	+	Silent	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ALKBH3-90	NM_139178	exon4	c.T216C	p.I72I	AGTGATTGAGTAA	.	214	83	233	0	.	0	0	0	0	0
RCE1	9986	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66613413	66613413	+	Silent	SNP	A	A	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	RCE1-290	NM_005133	exon8	c.A837C	p.P279P	GCACCCACAGAGG	.	190	73	199	1	.	35	18	17	0	0
PC	5091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66620716	66620716	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PC-228	NM_000920	exon12	c.T1507A	p.Y503N	CGAGGTAGTGCAA	.	88	28	104	0	.	0	0	0	0	0
UVRAG	7405	hgsc.bcm.edu	37	11	75526481	75526481	+	Missense_Mutation	SNP	C	C	A	rs7118567		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	UVRAG-229	NM_003369	exon1	c.C29A	p.P10H	GGGGCCCCGTCCC	.	4	4	1	1	C|0.828;A|0.172	0	0	0	0	0
PHLDB1	23187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118513026	118513026	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PHLDB1-90	NM_001144758	exon13	c.A2791T	p.M931L	GAGCTGATGGCCG	.	155	53	151	0	.	1	1	0	0	0
LRP6	4040	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	12334248	12334248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	LRP6-661	NM_002336	exon6	c.G1102A	p.D368N	CAGGATCGTAATC	.	295	162	171	0	.	0	0	0	0	0
PPFIA2	8499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	81671123	81671123	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PPFIA2-231	NM_001220473	exon27	c.C3283T	p.R1095W	CTTCCCGTCTTCT	.	20	12	15	0	.	0	0	0	0	0
RASSF9	9182	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	86199543	86199543	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	RASSF9-23	NM_005447	exon2	c.A245G	p.K82R	CTCCACTTCTCTA	.	216	53	137	0	.	0	0	0	0	0
ANKS1B	56899	hgsc.bcm.edu	37	12	100048989	100048989	+	Splice_Site	SNP	C	C	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	.	NM_152788	exon10	c.1129-1G>C	.	GGTTCTCTGAAAT	.	23	2	10	0	.	0	0	0	0	0
TDG	6996	hgsc.bcm.edu	37	12	104378526	104378526	+	Splice_Site	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TDG-661	NM_003211	exon8	c.793-1G>T	.	ATTCTAGCTCTGC	.	77	4	36	1	.	0	0	0	0	0
NCOR2	9612	hgsc.bcm.edu	37	12	124829474	124829474	+	Silent	SNP	G	G	A	rs61241227		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	NCOR2-229	NM_006312	exon34	c.C4383T	p.T1461T	CGCGCCGGTGTCG	.	11	5	5	1	A|0.000;C|0.003;G|0.996	14	0	14	0	0
SCARB1	949	hgsc.bcm.edu	37	12	125348148	125348148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SCARB1-226	NM_005505	exon1	c.T119C	p.V40A	TTAAGGACCTGCT	.	37	2	35	0	.	0	0	0	0	0
POLE	5426	hgsc.bcm.edu	37	12	133235892	133235892	+	Silent	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	POLE-233	NM_006231	exon26	c.T3264C	p.P1088P	CGTGACAGGGGAG	.	84	7	48	2	.	0	0	0	0	0
NPAP1	23742	hgsc.bcm.edu	37	15	24921074	24921074	+	Silent	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	.	NM_018958	exon1	c.A60G	p.P20P	AGGGCCAGGGCGT	.	28	2	21	0	.	0	0	0	0	0
TRPM1	4308	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	31362391	31362391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TRPM1-94	NM_001252020	exon3	c.C173A	p.P58H	GGCAGAGGGGGGA	.	382	147	370	1	.	0	0	0	0	0
SLC12A1	6557	hgsc.bcm.edu	37	15	48584051	48584051	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SLC12A1-24	NM_001184832	exon24	c.A2950G	p.N984D	AGGCCAAACAAAG	.	12	2	5	0	.	0	0	0	0	0
ANKDD1A	348094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65223120	65223120	+	Splice_Site	SNP	T	T	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ANKDD1A-69	NM_182703	exon7	c.669+2T>G	.	ATGCGGTGAGTCA	.	33	14	24	0	.	0	0	0	0	0
IGDCC4	57722	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	65684505	65684505	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	IGDCC4-93	NM_020962	exon11	c.A2089T	p.K697X	CTTTCTTCTTGAG	.	112	44	91	0	.	0	0	0	0	0
MAP2K5	5607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	67985904	67985904	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	MAP2K5-546	NM_145160	exon15	c.G970T	p.A324S	TATATGGCGGTAA	.	95	30	86	0	.	0	0	0	0	0
ACSBG1	23205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	78485857	78485857	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ACSBG1-91	NM_015162	exon5	c.G654C	p.K218N	CAGGATCTTTTCC	.	148	62	124	1	.	0	0	0	0	0
RASGRF1	5923	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	79254568	79254568	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	RASGRF1-662	NM_002891	exon28	c.A3740G	p.Y1247C	AGTAAATATTGCG	.	13	5	11	0	.	0	0	0	0	0
PKD1	5310	broad.mit.edu	37	16	2142548	2142548	+	Silent	SNP	G	G	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PKD1-91	NM_001009944	exon39	c.C11202T	p.Y3734Y	GTGGACGTAGGGC	.	53	4	38	0	.	10	10	0	0	0
SENP3	26168	broad.mit.edu	37	17	7470323	7470323	+	Splice_Site	SNP	G	G	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SENP3-659	NM_015670	exon8	c.1341+1G>A	.	AAAAACGTGAGTT	.	15	3	11	0	.	0	0	0	0	0
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10312636	10312636	+	Silent	SNP	A	A	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	MYH8-101	NM_002472	exon16	c.T1857A	p.T619T	GGCTAGAGTCTTC	.	147	77	124	0	.	0	0	0	0	0
AATK	9625	hgsc.bcm.edu	37	17	79096272	79096272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	AATK-933	NM_001080395	exon11	c.G1464T	p.E488D	GAAGGCCTCCGCG	.	6	3	1	1	.	1	1	0	0	0
C19orf21	126353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	758211	758211	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	C19orf21-91	NM_173481	exon2	c.C1265A	p.P422H	TCCCACCTGATGC	.	47	25	32	0	.	5	2	3	0	0
TUBB4A	10382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	6501326	6501326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	.	NM_006087	exon3	c.G249T	p.Q83H	AAAGATCTGACCG	.	53	27	65	0	.	9	4	5	0	0
ZNF557	79230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	7083599	7083599	+	Silent	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ZNF557-92	NM_001044387	exon8	c.T1137C	p.S379S	GTGCAGTGATTGT	.	65	16	76	0	.	1	0	1	0	0
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11135092	11135092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SMARCA4-1523	NM_003072	exon21	c.A3059G	p.D1020G	TGACTGATGGCTC	.	66	21	77	0	.	31	18	13	0	0
ZNF443	10224	hgsc.bcm.edu;broad.mit.edu	37	19	12541116	12541116	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ZNF443-91	NM_005815	exon4	c.G1870A	p.A624T	CAAATGCTTTCCC	.	218	64	183	0	.	4	3	1	0	0
NOSIP	51070	hgsc.bcm.edu	37	19	50060443	50060443	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	NOSIP-91	NM_015953	exon6	c.C322G	p.Q108E	GGTCCTGCGAGGC	.	21	2	18	0	.	36	36	0	0	0
ZSCAN5A	79149	bcgsc.ca	37	19	56733626	56733626	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ZSCAN5A-155	NM_024303	exon5	c.A809G	p.D270G	GGTGTGTCAGCAT	.	176	7	178	3	.	2	2	0	0	0
SLC30A6	55676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32422810	32422810	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SLC30A6-90	NM_001193513	exon11	c.T700A	p.F234I	AGTATCTTCCTTC	.	151	58	144	0	.	1	0	1	0	0
MTIF2	4528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	55470636	55470636	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	MTIF2-91	NM_002453	exon12	c.T1480C	p.F494L	CTAAAAACCGTAG	.	145	48	145	0	.	14	9	5	0	0
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	61493234	61493234	+	Silent	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	USP34-579	NM_014709	exon42	c.G5502A	p.K1834K	TTTGCACTTTGGC	.	82	33	67	0	.	4	3	1	0	0
RAB3GAP1	22930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	135891507	135891507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	RAB3GAP1-92	NM_001172435	exon15	c.A1403G	p.N468S	TGATCAATTTTTA	.	128	46	157	0	.	11	7	4	0	0
TNS1	7145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	218713668	218713668	+	Silent	SNP	C	C	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TNS1-156	NM_022648	exon17	c.G1197C	p.T399T	AGAAAGCGTGTGT	.	226	95	195	1	.	3	3	0	0	0
DNMT3B	1789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	31374365	31374365	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	DNMT3B-660	NM_175850	exon5	c.C400G	p.R134G	TCCCCACGTTCCA	.	123	54	114	0	.	1	0	1	0	0
MMP24	10893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	33851627	33851627	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	.	NM_006690	exon5	c.T851C	p.L284P	ATGAGCTGGGCCA	.	23	10	16	0	.	10	7	3	0	0
KRTAP10-12	386685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	46117131	46117131	+	Silent	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	KRTAP10-12-90	NM_198699	exon1	c.C15T	p.S5S	CTGCTCCAGCGAC	.	188	70	217	0	.	0	0	0	0	0
C21orf58	54058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	47731374	47731374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	C21orf58-91	NM_058180	exon6	c.G717T	p.K239N	ACCTTCCTTAATA	.	19	9	22	0	.	0	0	0	0	0
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29445939	29445939	+	Silent	SNP	C	C	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ZNRF3-69	NM_001206998	exon8	c.C1770G	p.L590L	CTCCCTCAGCAGC	.	235	81	220	0	.	6	6	0	0	0
C3orf22	152065	ucsc.edu;bcgsc.ca	37	3	126268739	126268739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	C3orf22-90	NM_152533	exon4	c.C398T	p.A133V	CCTGCCGCCTTGC	.	34	4	54	0	.	0	0	0	0	0
ABTB1	80325	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	127396051	127396051	+	Silent	SNP	C	C	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ABTB1-90	NM_172027	exon8	c.C684A	p.I228I	GACCATCGAGCCC	.	19	8	23	0	.	27	18	9	0	0
LSG1	55341	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	194379786	194379786	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	LSG1-90	NM_018385	exon7	c.A659C	p.E220A	CGCTGCTCAGCAG	.	265	96	263	0	.	4	0	4	0	0
CEP135	9662	hgsc.bcm.edu;bcgsc.ca	37	4	56874494	56874494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	CEP135-94	NM_025009	exon18	c.A2282G	p.E761G	TATAGGAAAAAGC	.	84	5	91	0	.	0	0	0	0	0
RCHY1	25898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	76415883	76415883	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	RCHY1-228	NM_015436	exon8	c.T565G	p.S189A	AAGCAGAGTGCAT	.	80	26	62	0	.	16	10	6	0	0
BMP2K	55589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	79786783	79786783	+	Silent	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	BMP2K-383	NM_017593	exon10	c.T1140C	p.T380T	TGCTACTACTGCC	.	104	44	104	0	.	1	1	0	0	0
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	104081805	104081805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	CENPE-277	NM_001813	exon21	c.G2263A	p.E755K	CTACTTCAGAAGG	.	85	39	90	0	.	0	0	0	0	0
LRBA	987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	151821345	151821345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	LRBA-157	NM_006726	exon14	c.C1780A	p.L594M	TGGACAGATAAGT	.	68	24	77	0	.	0	0	0	0	0
WWC2	80014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	184182067	184182067	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	WWC2-93	NM_024949	exon11	c.T1291A	p.S431T	AGCCTCTCTGCCA	.	36	18	27	0	.	0	0	0	0	0
KIAA0947	23379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	5461992	5461992	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	KIAA0947-48	NM_015325	exon13	c.A2545T	p.T849S	TTCAAGACCACTG	.	96	41	109	0	.	2	1	1	0	0
ITGA1	3672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	52211309	52211309	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ITGA1-228	NM_181501	exon15	c.G1873T	p.G625W	TCAGGTGGGGATG	.	157	62	171	0	.	1	1	0	0	0
LHFPL2	10184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	77784725	77784725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	LHFPL2-90	NM_005779	exon5	c.C682T	p.L228F	ACTAAAGGAGGCA	.	124	52	135	0	.	0	0	0	0	0
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu	37	5	101735268	101735268	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SLCO6A1-96	NM_173488	exon10	c.C1805T	p.A602V	GTCATGGCCAAGA	.	60	3	47	0	.	0	0	0	0	0
PCDHB14	56122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140605207	140605207	+	Silent	SNP	G	G	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PCDHB14-91	NM_018934	exon1	c.G2130C	p.A710A	CGTGGCGGTGCGG	.	333	109	391	0	.	21	18	0	3	0
SOX30	11063	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	157078648	157078648	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SOX30-91	NM_178424	exon1	c.G439A	p.D147N	ACTGATCCAGGCT	.	48	20	52	0	.	0	0	0	0	0
NKX2-5	1482	hgsc.bcm.edu	37	5	172659920	172659920	+	Silent	SNP	C	C	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	NKX2-5-90	NM_004387	exon2	c.G627C	p.P209P	CGGCGGCGGGGGC	.	18	2	10	1	.	0	0	0	0	0
NOTCH4	4855	hgsc.bcm.edu	37	6	32191691	32191691	+	Silent	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	NOTCH4-1321	NM_004557	exon1	c.A15G	p.S5S	CAGCAGTGAAGGG	.	57	4	38	1	.	1	1	0	0	0
BRD2	6046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32945538	32945538	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	BRD2-398	NM_005104	exon9	c.T1334C	p.V445A	AGGATGTATTTGA	.	155	82	180	1	.	0	0	0	0	0
SLC22A7	10864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43267444	43267444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SLC22A7-90	NM_153320	exon3	c.T583C	p.Y195H	GTCAGCTATGTAA	.	178	68	166	0	.	12	6	6	0	0
EPHA7	2045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	93969151	93969151	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	EPHA7-1453	NM_004440	exon10	c.G1845T	p.E615D	TGGGTCCTCATAG	.	168	72	172	0	.	9	4	5	0	0
OSTM1	28962	hgsc.bcm.edu	37	6	108395713	108395713	+	Missense_Mutation	SNP	G	G	C	rs201176284		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	OSTM1-68	NM_014028	exon1	c.C143G	p.S48W	TGCTCCGACAGGA	.	12	4	3	0	.	1	1	0	0	0
MAP3K4	4216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	161470014	161470014	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	MAP3K4-548	NM_006724	exon3	c.C710A	p.S237X	TTACCTCAGTCTC	.	54	23	49	0	.	0	0	0	0	0
HEATR2	54919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	803456	803456	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	HEATR2-69	NM_017802	exon8	c.T1628G	p.M543R	AGACGATGGACTC	.	261	44	137	0	.	23	17	6	0	0
TMEM184A	202915	hgsc.bcm.edu	37	7	1589783	1589783	+	Silent	SNP	G	G	A	rs139449337		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TMEM184A-90	NM_001097620	exon5	c.C528T	p.I176I	GAACCCGATGGAG	.	37	26	14	2	G|0.997;A|0.003	3	3	0	0	0
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	47870900	47870900	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PKD1L1-145	NM_138295	exon42	c.C6388G	p.Q2130E	AAGGCTGAAGGGC	.	211	48	105	0	.	0	0	0	0	0
COL1A2	1278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	94057039	94057039	+	Missense_Mutation	SNP	G	G	T	rs145541630	alternate_allele	TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	COL1A2-521	NM_000089	exon49	c.G3368T	p.R1123L	AGCCTCGCTCAGC	.	261	53	113	0	G|1.000;A|0.000	75	64	11	0	0
DOCK4	9732	hgsc.bcm.edu;broad.mit.edu	37	7	111629106	111629106	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	DOCK4-26	NM_014705	exon6	c.A428G	p.K143R	TGGCGCTTCACGT	.	63	12	33	0	.	0	0	0	0	0
GPR37	2861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	124404923	124404923	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	GPR37-523	NM_005302	exon1	c.C108G	p.N36K	AGTTTCGTTTCTG	.	86	61	46	0	.	0	0	0	0	0
MLL3	58508	hgsc.bcm.edu;bcgsc.ca	37	7	151962168	151962168	+	Missense_Mutation	SNP	C	C	G	rs78352960	alternate_allele	TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	MLL3-1398	NM_170606	exon8	c.G1139C	p.R380P	CCTGCACGTTTTA	.	901	146	771	0	C|0.500;A|0.500	2	2	0	0	0
PRSS3	5646	bcgsc.ca	37	9	33796657	33796657	+	Silent	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PRSS3-90	NM_007343	exon2	c.C228T	p.D76D	CTTTGACGATGAT	.	310	34	319	15	.	0	0	0	0	0
UCK1	83549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	134404931	134404931	+	Silent	SNP	G	G	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	UCK1-90	NM_001261451	exon3	c.C324T	p.N108N	CACGATGTTCTTC	.	179	79	192	1	.	55	28	27	0	0
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	135156906	135156906	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SETX-93	NM_015046	exon20	c.A6602G	p.K2201R	ATGAGCTTATTGC	.	118	53	130	0	.	4	2	2	0	0
TSC1	7248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	135781374	135781374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TSC1-1906	NM_000368	exon15	c.G1591A	p.V531M	GGTTCACGCTGGC	.	89	32	74	1	.	0	0	0	0	0
TXLNG	55787	hgsc.bcm.edu	37	X	16804661	16804661	+	Silent	SNP	A	A	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TXLNG-130	NM_018360	exon1	c.A51G	p.E17E	CGCCGAAGAGGCG	.	3	3	0	0	.	2	0	2	0	0
SH3KBP1	30011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	19626146	19626146	+	Silent	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SH3KBP1-130	NM_031892	exon9	c.C915A	p.G305G	CCACCAGCCTACG	.	50	40	38	0	.	4	2	2	0	0
MAGEB4	4115	broad.mit.edu	37	X	30261230	30261230	+	Silent	SNP	C	C	A	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	MAGEB4-131	NM_002367	exon1	c.C978A	p.G326G	GCGTGGCACTACA	.	23	3	31	0	.	0	0	0	0	0
KDM5C	8242	bcgsc.ca	37	X	53239616	53239616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	KDM5C-1272	NM_004187	exon12	c.C1726A	p.L576I	ACATGAGGGTGTT	.	46	4	52	0	.	12	12	0	0	0
PCDH11X	27328	ucsc.edu;bcgsc.ca	37	X	91456392	91456392	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PCDH11X-193	NM_001168363	exon3	c.C3052T	p.R1018X	GTTGTGCGATCTT	.	36	4	35	0	.	0	0	0	0	0
DCAF12L1	139170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	125685498	125685498	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	DCAF12L1-132	NM_178470	exon1	c.T1094G	p.V365G	GTGCCCACAGTGA	.	66	55	48	0	.	0	0	0	0	0
TCF7L2	6934	broad.mit.edu	37	10	114925317	114925317	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TCF7L2-586	NM_001146274	exon14	c.1395delA	p.R465fs	TAGGAGAAAAAAA	.	255	7	197	0	.	0	0	0	0	0
ATP2A2	488	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	110765478	110765478	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	ATP2A2-94	NM_001681	exon8	c.751delC	p.Q251fs	.	.	346	90	237	0	.	0	0	0	0	0
ZNF814	730051	broad.mit.edu	37	19	58386399	58386399	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	.	NM_001144989	exon3	c.359delA	p.H120fs	CACCTGTGCAGTT	.	116	16	107	0	.	0	0	0	0	0
IL36RN	26525	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	113820191	113820191	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	IL36RN-91	NM_012275	exon5	c.405delG	p.Q135fs	.	.	71	18	101	0	.	0	0	0	0	0
SGK2	10110	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	42203603	42203603	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SGK2-990	NM_016276	exon9	c.832delT	p.W278fs	.	.	48	21	52	0	.	0	0	0	0	0
RFPL3	10738	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	32754385	32754386	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	RFPL3-91	NM_001098535	exon1	c.327_328del	p.109_110del	.	.	184	72	174	0	.	0	0	0	0	0
EP300	2033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	41574164	41574176	+	Frame_Shift_Del	DEL	CACAGCAGCAACT	CACAGCAGCAACT	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	CACAGCAGCAACT	CACAGCAGCAACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	EP300-2011	NM_001429	exon31	c.6449_6461del	p.2150_2154del	.	.	106	42	120	0	.	0	0	0	0	0
ADTRP	84830	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	11723657	11723657	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	.	NM_001143948	exon6	c.637delG	p.A213fs	.	.	259	92	246	0	.	0	0	0	0	0
AIM1	202	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	106967843	106967843	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	AIM1-139	NM_001624	exon2	c.1536delT	p.N512fs	.	.	150	60	120	0	.	0	0	0	0	0
SOBP	55084	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	107827597	107827597	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SOBP-91	NM_018013	exon3	c.387delT	p.P129fs	.	.	300	100	256	0	.	0	0	0	0	0
SRRT	51593	broad.mit.edu;bcgsc.ca	37	7	100485469	100485473	+	Frame_Shift_Del	DEL	GCCCC	GCCCC	-	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	GCCCC	GCCCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SRRT-92	NM_001128853	exon17	c.2315_2319del	p.772_773del	CACCTGGCCCCGC	.	224	18	107	0	.	0	0	0	0	0
PC	5091	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	66617140	66617141	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	PC-228	NM_022172	exon19	c.3089_3090insC	p.L1030fs	.	.	77	18	77	0	.	0	0	0	0	0
LRFN4	78999	broad.mit.edu	37	11	66625888	66625889	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	LRFN4-90	NM_024036	exon1	c.673_674insC	p.A225fs	TCTCCCGCCCCCC	.	8	3	7	0	.	0	0	0	0	0
DSPP	1834	hgsc.bcm.edu	37	4	88535323	88535324	+	In_Frame_Ins	INS	-	-	GGCAGTGACTCAAAAGGAGCAGAA	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	DSPP-90	NM_014208	exon5	c.1509_1510insGGCAGTGACTCAAAAGGAGCAGAA	p.N503delinsNGSDSKGAE	.	.	115	19	121	0	.	0	0	0	0	0
SUV39H2	79723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	14939337	14939338	+	Missense_Mutation	DNP	AC	AC	TT	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	SUV39H2		exon3	c.C671T	p.T224F	CTGGTACTCCCAT	.	131.0	49.0	138.0	0.0	.	0	0	0	0	0
TECPR2	9895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102906785	102906786	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TECPR2		exon11	c.G2592T	p.W864F	TCTCTGGAAGATT	.	183.0	63.0	177.0	0.0	.	0	0	0	0	0
TFRC	7037	hgsc.bcm.edu;bcgsc.ca	37	3	195782165	195782166	+	Missense_Mutation	DNP	TC	TC	AG	novel		TCGA-DW-7840-01A-11D-2136-08	TCGA-DW-7840-10A-01D-2136-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9967ba89-7c82-4192-b2fa-ff7dfd8e1d38	0f3c3813-e814-4e7f-9a99-c3c2abc1d0bd	.	TFRC		exon17	c.G1684C	p.D562L	GATAATCTGTGTC	.	67.0	25.0	76.0	0.0	.	0	0	0	0	0