Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SKI	6497	hgsc.bcm.edu	37	1	2160390	2160390	+	Missense_Mutation	SNP	C	C	G	rs28384811		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	SKI-838	NM_003036	exon1	c.C185G	p.A62G	TGCCGGCGCCGGT	.	7	3	4	0	C|0.953;G|0.047	0	0	0	0	0
CLSTN1	22883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	9795602	9795602	+	Missense_Mutation	SNP	C	C	T	rs190578331		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	CLSTN1-523	NM_001009566	exon13	c.G1806A	p.M602I	GTGCTGCATGGCC	.	188	34	207	0	C|0.999;T|0.001	456	296	160	0	0
SRRM1	10250	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	24993373	24993373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	SRRM1-93	NM_005839	exon13	c.C1696T	p.P566S	GCCCCTCCTCCTC	.	58	8	65	0	.	126	80	46	0	0
BSDC1	55108	broad.mit.edu	37	1	32842099	32842099	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	BSDC1-92	NM_001143888	exon9	c.A971C	p.Q324P	AGCTTTTGGGACA	.	184	3	135	0	.	94	94	0	0	0
POGZ	23126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151378756	151378756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	POGZ-93	NM_015100	exon19	c.C2755T	p.P919S	GGGTTGGTGGTGG	.	140	32	114	0	.	31	18	13	0	0
BTG2	7832	broad.mit.edu	37	1	203276560	203276560	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	BTG2-651	NM_006763	exon2	c.C471T	p.S157S	AGTCTCCAGCTAG	.	60	4	64	0	.	84	70	14	0	0
MARC1	64757	broad.mit.edu	37	1	220964857	220964857	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	.	NM_022746	exon2	c.G300A	p.E100E	CCAGGAGGGAAAC	.	70	4	73	0	.	1	1	0	0	0
ACTA1	58	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	229568083	229568083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	ACTA1-90	NM_001100	exon4	c.G550A	p.G184S	CGCGGCCCGCCAG	.	76	13	63	0	.	1	1	0	0	0
DIP2C	22982	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	390986	390986	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	DIP2C-156	NM_014974	exon27	c.C3296T	p.A1099V	GCCGCCGCCTCCC	.	36	7	47	0	.	38	21	17	0	0
CAMK1D	57118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	12595265	12595265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	CAMK1D-334	NM_153498	exon2	c.C134T	p.T45I	AGGCAACTGGCAA	.	189	35	205	0	.	9	8	1	0	0
ATRNL1	26033	hgsc.bcm.edu;broad.mit.edu	37	10	116889093	116889093	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	ATRNL1-96	NM_207303	exon5	c.A625C	p.N209H	AGAATCAATTCTT	.	48	10	52	0	.	0	0	0	0	0
SLC43A1	8501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57261478	57261478	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	SLC43A1-90	NM_001198810	exon8	c.A859T	p.N287Y	GAAGGTTTTCTGA	.	62	13	74	0	.	0	0	0	0	0
CAPN5	726	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	76825445	76825445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	CAPN5-90	NM_004055	exon5	c.C664T	p.H222Y	AAGGTGCACAGCC	.	330	21	438	1	.	68	58	10	0	0
USP35	57558	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	77921303	77921303	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	USP35-637	NM_020798	exon10	c.C2402T	p.P801L	AAGGGCCGTGCTA	.	112	8	165	0	.	8	7	1	0	0
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82877713	82877713	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	PCF11-23	NM_015885	exon5	c.A1774G	p.K592E	AGTTCCAAGTCTG	.	156	29	134	0	.	11	8	3	0	0
ATF7	11016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53910964	53910964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	ATF7-455	NM_006856	exon12	c.C1409T	p.S470L	ACATGCGATTGTA	.	184	36	171	0	.	50	33	17	0	0
SMARCC2	6601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56558339	56558339	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	SMARCC2-229	NM_003075	exon27	c.A3316G	p.I1106V	TACTGATGGAGTC	.	120	42	92	0	.	76	29	47	0	0
VSIG10	54621	hgsc.bcm.edu	37	12	118506354	118506354	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	.	NM_019086	exon8	c.A1395G	p.E465E	CTCCTCTTCCTCT	.	26	2	35	1	.	18	18	0	0	0
GCH1	2643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	55310765	55310765	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	GCH1-91	NM_000161	exon6	c.G723A	p.R241R	CTCTTCCCGAGTC	.	155	24	164	1	.	11	11	0	0	0
BTBD6	90135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	105716270	105716270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	BTBD6-90	NM_033271	exon5	c.C719T	p.A240V	GGGAGGCCCTCAA	.	44	7	54	0	.	71	47	24	0	0
MYO5C	55930	broad.mit.edu	37	15	52504078	52504078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	MYO5C-145	NM_018728	exon35	c.T4145C	p.L1382S	GGCTTCAAGTCTG	.	87	3	104	0	.	0	0	0	0	0
ACAN	176	hgsc.bcm.edu	37	15	89389052	89389052	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	ACAN-25	NM_001135	exon7	c.C1368G	p.F456L	GGCATTCACCAGT	.	13	2	18	0	.	2	2	0	0	0
FAM86A	196483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	5140457	5140457	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	FAM86A-90	NM_201400	exon5	c.A452T	p.E151V	GGGTTCTCGATGG	.	159	16	128	0	.	21	18	3	0	0
TPPP3	51673	broad.mit.edu;bcgsc.ca	37	16	67424233	67424233	+	Silent	SNP	C	C	G	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	TPPP3-90	NM_016140	exon5	c.G375C	p.L125L	GTCCGTCAGCCGG	.	255	7	261	0	.	50	49	1	0	0
OR1D5	8386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	2966535	2966535	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	.	NM_014566	exon1	c.T367A	p.Y123N	CCACATAGCGATC	.	130	39	131	0	.	0	0	0	0	0
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10426831	10426831	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	MYH2-194	NM_017534	exon37	c.C5454T	p.I1818I	TTTCTGGATCTGC	.	230	82	190	0	.	50	50	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	462	56	395	46	.	77	10	67	0	0
RHBDL3	162494	bcgsc.ca	37	17	30632400	30632400	+	Silent	SNP	C	C	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	RHBDL3-91	NM_138328	exon7	c.C822T	p.V274V	TCCAGTCGTGGGC	.	167	20	149	0	.	0	0	0	0	0
RDM1	201299	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	34257138	34257138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	RDM1-228	NM_001034836	exon2	c.C218T	p.A73V	CTGTGGGCAGCCC	.	361	23	271	0	.	0	0	0	0	0
MLX	6945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40720856	40720856	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	MLX-90	NM_170607	exon4	c.T333C	p.D111D	CGTAGATGATGAG	.	23	6	21	0	.	0	0	0	0	0
MLL4	8085	ucsc.edu	37	19	36228069	36228069	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	MLL4-697	NM_014727	exon33	c.C7455G	p.C2485W	GCGTTGCCAGCAC	.	12	2	28	0	.	26	18	8	0	0
ZNF568	374900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	37441598	37441598	+	Missense_Mutation	SNP	T	T	C	rs201711551		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	ZNF568-136	NM_198539	exon7	c.T1543C	p.S515P	CAGAAATCAAACC	.	101	15	96	0	T|1.000;C|0.000	2	2	0	0	0
DHDH	27294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49447704	49447704	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	DHDH-90	NM_014475	exon6	c.T835G	p.F279V	TGCAATTTTGACA	.	110	24	147	0	.	32	13	19	0	0
DHDH	27294	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49447728	49447728	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	DHDH-90	NM_014475	exon6	c.T859A	p.Y287N	ATGAGTTATGAGG	.	116	20	153	0	.	25	16	9	0	0
ZSCAN18	65982	broad.mit.edu	37	19	58596700	58596700	+	Silent	SNP	G	G	A	rs200010643		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	ZSCAN18-90	NM_001145542	exon7	c.C1053T	p.A351A	GGGGGCGGCCTCC	.	26	4	45	0	G|0.998;A|0.002	62	42	20	0	0
PDIA6	10130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	10927529	10927529	+	Silent	SNP	A	A	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	PDIA6-90	NM_005742	exon11	c.T1035A	p.L345L	GGTCTCAAGTTCA	.	80	10	79	0	.	771	675	96	0	0
STAT1	6772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	191859893	191859893	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	STAT1-1335	NM_007315	exon10	c.T838A	p.L280M	CCTCCAACTTTTT	.	109	35	96	1	.	164	103	61	0	0
WNT10A	80326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219754883	219754883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	WNT10A-523	NM_025216	exon3	c.G554A	p.G185D	AGCGTGGTAAGGG	.	67	13	67	0	.	4	4	0	0	0
GPR55	9290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	231775289	231775289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	GPR55-91	NM_005683	exon2	c.G389A	p.S130N	AGGTGGCTCACCA	.	78	8	76	1	.	0	0	0	0	0
TP53TG5	27296	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	44005872	44005872	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	TP53TG5-90	NM_014477	exon3	c.G234C	p.K78N	GAGAATCTTTGGA	.	185	11	219	0	.	0	0	0	0	0
GRM2	2912	broad.mit.edu	37	3	51749233	51749233	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	GRM2-522	NM_000839	exon4	c.A1444C	p.T482P	CTGGACACCAGCC	.	39	7	43	6	.	0	0	0	0	0
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	PIK3CA-27752	NM_006218	exon10	c.G1624A	p.E542K	CTCTCTGAAATCA	.	87	24	78	0	.	14	5	9	0	0
PCDHB10	56126	broad.mit.edu	37	5	140573732	140573732	+	Missense_Mutation	SNP	G	G	A	rs17844579	bycluster	TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	PCDHB10-92	NM_018930	exon1	c.G1607A	p.R536H	CAGACCGCGGCTC	.	217	5	286	0	G|1.000;T|0.000	3	3	0	0	0
GFPT2	9945	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	179751868	179751868	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	GFPT2-92	NM_005110	exon8	c.C624T	p.V208V	GCTCCGGACTCCG	.	168	32	181	1	.	7	6	1	0	0
GRM4	2914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	34059742	34059742	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	GRM4-525	NM_001256811	exon3	c.G654A	p.W218X	ATAGTTCCACTTG	.	68	16	69	1	.	0	0	0	0	0
CRIP3	401262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43275462	43275462	+	Silent	SNP	T	T	C	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	CRIP3-91	NM_206922	exon4	c.A216G	p.V72V	GGAGCCTACACCA	.	97	18	90	0	.	1	1	0	0	0
LOC100506776	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	38389256	38389256	+	RNA	SNP	T	T	C	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	.	.	.	.	.	GGAAGATTTCTGA	.	117	31	92	0	.	2	2	0	0	0
ZNF679	168417	broad.mit.edu	37	7	63720697	63720697	+	Silent	SNP	A	A	G	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	ZNF679-1	NM_153363	exon3	c.A138G	p.L46L	GATGTTAGAGAAC	.	184	4	214	0	.	36	6	30	0	0
FZD1	8321	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	90894779	90894779	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	FZD1-658	NM_003505	exon1	c.G584A	p.R195H	GCGCGCGCCAGGG	.	169	33	119	0	.	76	56	20	0	0
ATP5J2-PTCD1	100526740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99022814	99022814	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	.	NM_001198879	exon7	c.C1488T	p.A496A	GGGAACGGCCCCG	.	149	50	136	0	.	20	7	13	0	0
ZCWPW1	55063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100016757	100016757	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	ZCWPW1-90	NM_001258008	exon5	c.A338G	p.Q113R	GACTTCTGCAGAA	.	246	96	235	2	.	1	1	0	0	0
SERPINE1	5054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100780346	100780346	+	Silent	SNP	G	G	C	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	SERPINE1-652	NM_000602	exon8	c.G1152C	p.V384V	CTTTGTGGTCCGG	.	203	27	202	0	.	34	33	1	0	0
SLC26A5	375611	broad.mit.edu;bcgsc.ca	37	7	103017286	103017286	+	Silent	SNP	G	G	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	SLC26A5-91	NM_206883	exon19	c.C2010A	p.V670V	TATACCGACGTCT	.	171	8	134	0	.	0	0	0	0	0
HSDL2	84263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	115181173	115181173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	HSDL2-90	NM_032303	exon6	c.A533G	p.Y178C	CTATGTATGTGCT	.	83	6	70	0	.	101	83	18	0	0
ALAD	210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	116151742	116151742	+	Silent	SNP	G	G	A	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	ALAD-90	NM_000031	exon10	c.C777T	p.D259D	CACGATGTCCAGG	.	112	26	168	0	.	63	36	27	0	0
CHST7	56548	hgsc.bcm.edu	37	X	46434588	46434588	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	CHST7-133	NM_019886	exon1	c.A1222C	p.M408L	CTCAACATGACTC	.	2	2	0	0	.	0	0	0	0	0
SLAMF1	6504	broad.mit.edu	37	1	160589601	160589601	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	SLAMF1-154	NM_003037	exon5	c.829delA	p.S277fs	TAAGGCTTTTTTT	.	231	8	180	0	.	0	0	0	0	0
AGAP4	119016	broad.mit.edu	37	10	46342668	46342688	+	In_Frame_Del	DEL	GCTCCTGCCATCCTGTCCCCA	GCTCCTGCCATCCTGTCCCCA	-	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	GCTCCTGCCATCCTGTCCCCA	GCTCCTGCCATCCTGTCCCCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	AGAP4-23	NM_133446	exon1	c.108_128del	p.36_43del	ATGGGCGCTCCTG	.	171	3	196	0	.	0	0	0	0	0
KCNN1	3780	broad.mit.edu	37	19	18109140	18109140	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	KCNN1-22	NM_002248	exon11	c.1557delC	p.G519fs	GCCCGGCCCCGGC	.	6	2	9	0	.	0	0	0	0	0
HTT	3064	broad.mit.edu	37	4	3076604	3076609	+	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	rs10618869	alternate_allele	TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	CAGCAG	CAGCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	HTT-281	NM_002111	exon1	c.52_57del	p.18_19del	TCCTTCCAGCAGC	.	6	2	8	0	.	0	0	0	0	0
NR2C2AP	126382	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	19313644	19313645	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	NR2C2AP-23	NM_176880	exon2	c.85_86insA	p.H29fs	.	.	116	20	138	0	.	0	0	0	0	0
NINL	22981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	25469911	25469912	+	Nonsense_Mutation	DNP	GC	GC	TA	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	NINL		exon13	c.G1645T	p.A549*	GGACTGCTGCGAA	.	165.0	24.0	204.0	1.0	.	0	0	0	0	0
C20orf141	128653	ucsc.edu;bcgsc.ca	37	20	2796280	2796281	+	Nonsense_Mutation	DNP	GC	GC	TT	novel		TCGA-DZ-6134-01A-11D-1961-08	TCGA-DZ-6134-10A-01D-1962-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	230ddafa-8d9f-4ddc-b864-ba8eb42a31ab	8e8a3cd2-c9ae-4be6-8682-214badaa00a5	.	C20orf141-90	NM_080739	exon2	c.C358T	p.Q120*	CTCCTGCAAATGG	.	83	10	95	0	.	0	0	0	0	0