Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
C1orf94	84970	ucsc.edu	37	1	34677972	34677972	+	Silent	SNP	A	A	G	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	C1orf94-90	NM_001134734	exon6	c.A1686G	p.G562G	GGCAGGAGATGGA	.	45	5	65	1	.	0	0	0	0	0
RNF115	27246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	145688091	145688091	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	RNF115-91	NM_014455	exon9	c.T786A	p.H262Q	TCAGCATGACACA	.	139	48	171	0	.	0	0	0	0	0
ANP32E	81611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150201557	150201557	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ANP32E-90	NM_030920	exon4	c.A341C	p.N114T	TTCAAATTTTTAA	.	56	23	72	1	.	0	0	0	0	0
NHLH1	4807	broad.mit.edu;bcgsc.ca	37	1	160340735	160340735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	NHLH1-69	NM_005598	exon2	c.G214A	p.A72T	CGCCGCGCCACAG	.	15	4	25	0	.	0	0	0	0	0
ARHGAP30	257106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161021130	161021130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ARHGAP30-25	NM_001025598	exon10	c.G1394T	p.G465V	CCAGGGCCAGGGC	.	57	20	51	0	.	41	41	0	0	0
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61836183	61836183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ANK3-107	NM_020987	exon37	c.A4456G	p.R1486G	GGGATCTTGTTGC	.	58	27	55	0	.	0	0	0	0	0
MSS51	118490	hgsc.bcm.edu;broad.mit.edu	37	10	75185676	75185676	+	Missense_Mutation	SNP	C	C	T	rs143815503	byfrequency;alternate_allele	TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	.	NM_001024593	exon5	c.G962A	p.G321D	ATTGTGCCAGGTT	.	56	4	55	0	C|1.000;A|0.000	1	1	0	0	0
LDB3	11155	hgsc.bcm.edu	37	10	88476182	88476182	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	LDB3-92	NM_001171610	exon10	c.G1345C	p.A449P	GCCCCTGCCTACA	.	15	3	9	0	.	0	0	0	0	0
IFIT1B	439996	broad.mit.edu	37	10	91143275	91143275	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	IFIT1B-90	NM_001010987	exon2	c.G205C	p.E69Q	CAGAATGAGGAAG	.	132	3	104	0	.	0	0	0	0	0
MALAT1	378938	broad.mit.edu;bcgsc.ca	37	11	65270998	65270998	+	RNA	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	.	.	.	.	.	TGTGCTGTTAGAA	.	159	12	174	0	.	59	53	6	0	0
SCARNA10	692148	bcgsc.ca	37	12	6619468	6619468	+	RNA	SNP	A	A	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	.	.	.	.	.	TCTGTAATCTTGG	.	225	9	201	0	.	0	0	0	0	0
GUCY2C	2984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	14796597	14796597	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	GUCY2C-338	NM_004963	exon17	c.G1841A	p.R614H	TTCAGACGACCAT	.	217	51	247	0	.	1	1	0	0	0
KDM2B	84678	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	121947832	121947832	+	Silent	SNP	C	C	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	KDM2B-638	NM_032590	exon11	c.G1185A	p.R395R	GGGCTTCCTCGGG	.	70	24	99	0	.	0	0	0	0	0
SACS	26278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	23909472	23909472	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	SACS-298	NM_014363	exon10	c.T8543A	p.F2848Y	CGTGGGAAAAGAG	.	155	57	139	0	.	18	10	8	0	0
B3GALTL	145173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	31821210	31821210	+	Silent	SNP	A	A	G	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	B3GALTL-92	NM_194318	exon5	c.A321G	p.A107A	AGGTGCATGGACC	.	105	30	73	0	.	9	8	1	0	0
AHNAK2	113146	ucsc.edu	37	14	105418145	105418145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	AHNAK2-47	NM_138420	exon7	c.C3643T	p.P1215S	AAGGGGGCTGAAT	.	136	1	158	1	.	122	98	23	0	1
ZFP106	64397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42717056	42717056	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ZFP106-515	NM_022473	exon13	c.T5097G	p.H1699Q	TTTGCTATGGCCC	.	31	14	55	0	.	31	22	9	0	0
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	81230320	81230320	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	KIAA1199-93	NM_018689	exon24	c.G3407A	p.G1136E	ACTCAGGGTGAGC	.	28	14	23	0	.	0	0	0	0	0
AXIN1	8312	broad.mit.edu	37	16	354433	354433	+	Silent	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	AXIN1-684	NM_181050	exon5	c.C1125T	p.Y375Y	CACCCGGTACGTG	.	45	3	56	0	.	5	5	0	0	0
ROGDI	79641	hgsc.bcm.edu	37	16	4849745	4849745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ROGDI-92	NM_024589	exon6	c.A374G	p.Y125C	AGCAGGTAAATGG	.	31	2	41	0	.	79	79	0	0	0
FBRS	64319	hgsc.bcm.edu;broad.mit.edu	37	16	30676958	30676958	+	Splice_Site	SNP	G	G	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	FBRS-23	NM_001105079	exon5	c.145-1G>C	.	TTCCCAGAGCACG	.	12	2	10	0	.	3	3	0	0	0
ALOX12	239	broad.mit.edu	37	17	6905026	6905026	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ALOX12-226	NM_000697	exon8	c.C1057A	p.Q353K	GATTTCCAACTGC	.	224	5	192	0	.	2	2	0	0	0
LRRC37A3	374819	ucsc.edu	37	17	62855652	62855652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	LRRC37A3-90	NM_199340	exon11	c.A4612G	p.K1538E	CTATCTTGGATGC	.	459	14	313	7	.	61	19	42	0	0
ABCA5	23461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	67283846	67283846	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ABCA5-93	NM_018672	exon14	c.G1949A	p.R650Q	ATATGTCGAGAAC	.	193	101	121	1	.	15	4	11	0	0
POLRMT	5442	broad.mit.edu	37	19	621842	621842	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	POLRMT-92	NM_005035	exon10	c.G1856A	p.G619D	AGGATGCCGATCT	.	28	3	49	0	.	0	0	0	0	0
PDE4A	5141	hgsc.bcm.edu	37	19	10541704	10541704	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	PDE4A-523	NM_001111308	exon1	c.C184A	p.R62S	CGCAGACGCCTTC	.	14	4	8	0	.	12	7	5	0	0
RAB3A	5864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18313494	18313494	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	RAB3A-227	NM_002866	exon2	c.C57G	p.F19L	GTAGTCGAAGTTC	.	195	56	246	0	.	8	4	4	0	0
ZNF155	7711	broad.mit.edu	37	19	44501505	44501505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ZNF155-154	NM_001260488	exon6	c.G1529A	p.R510H	CATACCGTAAAGA	.	107	4	127	0	.	11	11	0	0	0
VPS54	51542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	64199372	64199372	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	VPS54-90	NM_016516	exon4	c.A385T	p.K129X	GAATCTTCTCTCT	.	63	22	52	0	.	0	0	0	0	0
ARID5A	10865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	97216937	97216937	+	Silent	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ARID5A-226	NM_212481	exon7	c.G672A	p.G224G	CTCTGGGTCTTCT	.	108	27	131	0	.	24	22	2	0	0
CNNM4	26504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	97427340	97427340	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	CNNM4-154	NM_020184	exon1	c.C604A	p.L202I	TCTGGCCTCAACC	.	125	47	157	0	.	41	26	15	0	0
PRPF40A	55660	hgsc.bcm.edu	37	2	153532998	153532998	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	PRPF40A-68	NM_017892	exon10	c.A952G	p.T318A	CAGGGGTACTAGT	.	24	2	23	0	.	64	64	0	0	0
CSNK2A1	1457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	468205	468205	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	CSNK2A1-791	NM_001895	exon11	c.G839A	p.R280Q	TCCCATCGCTTTC	.	70	21	69	0	.	193	98	95	0	0
CRYZL1	9946	broad.mit.edu	37	21	34974552	34974552	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	CRYZL1-90	NM_145858	exon8	c.A565G	p.R189G	GAGGTCTGAATCT	.	91	3	89	1	.	0	0	0	0	0
HMOX1	3162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	35779129	35779129	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	HMOX1-91	NM_002133	exon2	c.G54T	p.K18N	CCTGAAGGAGGCC	.	94	29	156	0	.	30	25	5	0	0
SUN2	25777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	39146253	39146253	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	SUN2-154	NM_001199579	exon5	c.T560C	p.L187P	ATCCAGAGTAAGG	.	66	22	82	0	.	177	105	72	0	0
PSMD6	9861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	64004274	64004274	+	Splice_Site	SNP	C	C	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	PSMD6-91	NM_001271779	exon7	c.985+1G>T	.	TCCTTACCTAATG	.	34	12	44	0	.	2	0	2	0	0
EPHA6	285220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	97202865	97202865	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	EPHA6-1561	NM_001080448	exon10	c.A2162C	p.D721A	AGATTGATCCCTC	.	46	26	42	0	.	0	0	0	0	0
PHC3	80012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	169847187	169847187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	PHC3-227	NM_024947	exon8	c.C1073T	p.P358L	GGGGGTGGGTCTT	.	156	45	127	0	.	27	20	7	0	0
PDGFRA	5156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	55139834	55139834	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	PDGFRA-9497	NM_006206	exon10	c.G1495A	p.V499M	ATCGCCGTGCGAT	.	79	25	126	0	.	22	22	0	0	0
TERT	7015	broad.mit.edu	37	5	1268651	1268651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	TERT-1272	NM_001193376	exon9	c.G2566T	p.G856W	GAATCCCCGCAAA	.	35	3	48	0	.	0	0	0	0	0
LPCAT1	79888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1488543	1488543	+	Silent	SNP	A	A	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	LPCAT1-92	NM_024830	exon5	c.T630A	p.T210T	TGTACAAGTTCCT	.	107	47	152	0	.	27	17	10	0	0
NSUN2	54888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	6620280	6620280	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	NSUN2-91	NM_017755	exon7	c.G754A	p.D252N	CCACATCTATCTG	.	122	40	125	0	.	42	22	20	0	0
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	82836813	82836813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	VCAN-238	NM_004385	exon8	c.A7991G	p.D2664G	AACTAGATCACAT	.	153	45	157	0	.	918	613	305	0	0
SLC22A5	6584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	131729504	131729504	+	Splice_Site	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	SLC22A5-90	NM_003060	exon9	c.1586+1G>A	.	CAAAGGGTAAGAA	.	154	61	211	0	.	1	0	1	0	0
PPP1R10	5514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30577691	30577691	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	PPP1R10-660	NM_002714	exon3	c.C31A	p.L11I	TGAGAAGTTCTTT	.	97	33	106	0	.	38	20	18	0	0
URGCP	55665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	43918184	43918184	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	URGCP-94	NM_001077663	exon6	c.T878G	p.F293C	TGCCAGAAGCAGT	.	75	21	70	0	.	50	34	16	0	0
BAZ1B	9031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	72907199	72907199	+	Silent	SNP	T	T	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	BAZ1B-159	NM_032408	exon5	c.A624G	p.G208G	CCTTTCTCCTTTT	.	112	26	51	0	.	77	48	29	0	0
ZFHX4	79776	hgsc.bcm.edu	37	8	77618779	77618779	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ZFHX4-98	NM_024721	exon2	c.A2456G	p.E819G	AAGCAGAGCTTTA	.	15	2	23	0	.	1	1	0	0	0
PLEC	5339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144997708	144997708	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	PLEC-141	NM_201380	exon31	c.A6800T	p.Q2267L	TGTGCCTGAGCCC	.	24	5	27	0	.	57	41	16	0	0
ABCA2	20	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139908396	139908396	+	Silent	SNP	G	G	C	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	ABCA2-90	NM_212533	exon28	c.C4425G	p.V1475V	GCGTTTGACCAGC	.	33	11	37	0	.	70	37	33	0	0
DDX3X	1654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	41202004	41202004	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	DDX3X-715	NM_001193416	exon6	c.G458A	p.G153E	TTTCTGGAGGCAA	.	145	54	146	0	.	3	0	3	0	0
BSN	8927	hgsc.bcm.edu	37	3	49698758	49698759	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	BSN-97	NM_003458	exon6	c.9480_9481del	p.3160_3161del	.	.	36	10	95	0	.	0	0	0	0	0
CD86	942	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	121825262	121825263	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	CD86-92	NM_175862	exon4	c.618_619del	p.206_207del	.	.	362	177	263	0	.	0	0	0	0	0
CEP63	80254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	134250746	134250746	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	CEP63-493	NM_001042383	exon4	c.282delG	p.M94fs	.	.	80	41	79	0	.	0	0	0	0	0
CCDC129	223075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	31683522	31683527	+	In_Frame_Del	DEL	GACTTT	GACTTT	-	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	GACTTT	GACTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	.	NM_001257968	exon11	c.2616_2621del	p.872_874del	.	.	121	26	64	0	.	0	0	0	0	0
DNAJC2	27000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	102963052	102963053	+	Nonsense_Mutation	DNP	AT	AT	TA	novel		TCGA-EV-5901-01A-11D-1589-08	TCGA-EV-5901-10A-01D-1589-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	846543e9-145b-4332-9043-5817b55e2208	8623db0f-675b-4d34-ba2b-5c12aa3e9b7b	.	DNAJC2		exon9	c.A838T	p.I280*	TTTTTATCCTTGG	.	60.0	33.0	53.0	0.0	.	0	0	0	0	0