Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CHD5	26038	bcgsc.ca	37	1	6185908	6185908	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	CHD5-719	NM_015557	exon27	c.T4089G	p.D1363E	GAGCTCATCCTGC	.	81	22	98	7	.	0	0	0	0	0
AHDC1	27245	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27875947	27875947	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	AHDC1-90	NM_001029882	exon6	c.A2680C	p.K894Q	TGGCCTTGGCTCC	.	55	33	53	0	.	23	8	15	0	0
USP24	23358	hgsc.bcm.edu;broad.mit.edu	37	1	55569689	55569689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	USP24-521	NM_015306	exon42	c.A4885G	p.S1629G	CTGTACTACACCT	.	21	6	11	0	.	0	0	0	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367739	145367739	+	Silent	SNP	A	A	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	.	NM_001039703	exon83	c.A10335G	p.K3445K	GGGGAAAAAAAGA	.	128	4	164	1	.	408	31	377	0	0
C1orf54	79630	broad.mit.edu	37	1	150246559	150246559	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	C1orf54-90	NM_024579	exon2	c.T116C	p.V39A	ATACAGTCACCCC	.	169	4	174	0	.	0	0	0	0	0
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152279672	152279672	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	FLG-106	NM_002016	exon3	c.G7690T	p.G2564X	TGGATCCCCAGTT	.	433	213	424	1	.	0	0	0	0	0
MYOC	4653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	171605341	171605341	+	Silent	SNP	G	G	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MYOC-226	NM_000261	exon3	c.C1239G	p.L413L	TTGTTCGAGTTCC	.	155	63	214	0	.	0	0	0	0	0
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228473855	228473855	+	Silent	SNP	G	G	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	OBSCN-403	NM_001271223	exon39	c.G10368C	p.R3456R	TTGCCGGATCTCC	.	19	12	28	0	.	8	6	2	0	0
WDR37	22884	hgsc.bcm.edu	37	10	1151150	1151150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	WDR37-90	NM_014023	exon11	c.T1046C	p.L349P	TCCGCCTCTGGGA	.	41	3	54	0	.	14	14	0	0	0
PARG	8505	broad.mit.edu	37	10	51093329	51093329	+	Missense_Mutation	SNP	C	C	T	rs2573509		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	PARG-948	NM_003631	exon8	c.G1750A	p.A584T	CTTCTGCTTCTTC	.	113	5	81	1	.	0	0	0	0	0
ABLIM1	3983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	116225561	116225561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ABLIM1-153	NM_002313	exon12	c.T1337C	p.M446T	TGGATCATCCGAT	.	174	88	178	0	.	83	31	52	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1092926	1092926	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MUC2-90	NM_002457	exon30	c.C4745G	p.T1582R	CCCCAACATCGAC	.	25	3	1	0	.	0	0	0	0	0
TRIM22	10346	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5717510	5717510	+	Silent	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	TRIM22-90	NM_001199573	exon2	c.C48T	p.P16P	CTGCCCCATCTGC	.	72	40	66	0	.	84	40	44	0	0
GPR137	56834	broad.mit.edu	37	11	64056826	64056826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	GPR137-68	NM_001170726	exon9	c.C1417T	p.P473S	CTTGTGCCGTCCC	.	130	4	140	0	.	37	37	0	0	0
ARHGEF17	9828	ucsc.edu;bcgsc.ca	37	11	73073120	73073120	+	Silent	SNP	G	G	T	rs200742689	alternate_allele	TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ARHGEF17-227	NM_014786	exon13	c.G4530T	p.P1510P	CTGCCCGGAGCCC	.	36	5	47	0	G|0.999;A|0.000	17	17	0	0	0
OR2AT4	341152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	74800733	74800733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	OR2AT4-69	NM_001005285	exon1	c.C26T	p.S9L	TCCACTGATTCAT	.	89	43	88	0	.	0	0	0	0	0
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	76867021	76867021	+	Silent	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MYO7A-138	NM_001127179	exon5	c.C354T	p.H118H	AGAGCACATCCGC	.	13	9	28	0	.	0	0	0	0	0
GAB2	9846	broad.mit.edu	37	11	77991912	77991912	+	Silent	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	GAB2-663	NM_080491	exon2	c.C111T	p.G37G	CATCCGGCCACTC	.	154	7	158	0	.	10	10	0	0	0
METTL25	84190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	82752495	82752495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	.	NM_032230	exon1	c.G151A	p.V51I	GAGCTGGTCGACT	.	103	39	83	0	.	14	9	5	0	0
SBNO1	55206	broad.mit.edu	37	12	123780522	123780522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	SBNO1-292	NM_001167856	exon31	c.C4115T	p.A1372V	TGGACCGCAAGCT	.	302	6	319	0	.	21	21	0	0	0
PROSER1	80209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	39587414	39587414	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	.	NM_025138	exon11	c.G1975T	p.A659S	ACAATGCAGGATT	.	99	50	151	0	.	22	12	10	0	0
SNORA31	677814	ucsc.edu;bcgsc.ca	37	13	45911726	45911726	+	RNA	SNP	G	G	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	.	.	.	.	.	GTTCAAGGTCTAT	.	61	20	75	0	.	1	0	1	0	0
DACH1	1602	hgsc.bcm.edu	37	13	72440673	72440673	+	Missense_Mutation	SNP	C	C	T	rs200162861		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	DACH1-135	NM_080759	exon1	c.G235A	p.G79S	CGCCGCCGCCGCC	.	3	2	3	1	.	4	3	0	1	0
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	77799654	77799654	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MYCBP2-236	NM_015057	exon19	c.A2773G	p.K925E	TGATTTTGCTTGC	.	146	65	152	0	.	13	6	7	0	0
COCH	1690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	31355476	31355476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	COCH-228	NM_004086	exon11	c.T1435C	p.Y479H	CAGTCCTATGATG	.	77	36	87	1	.	0	0	0	0	0
FERMT2	10979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	53360052	53360052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	FERMT2-68	NM_001135000	exon4	c.A485G	p.E162G	AGTGCCTCATCTT	.	177	72	192	0	.	31	21	10	0	0
MRPL46	26589	broad.mit.edu	37	15	89008985	89008985	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MRPL46-90	NM_022163	exon2	c.T248C	p.L83P	GAATACAGGCTTC	.	129	3	174	0	.	7	7	0	0	0
CRAMP1L	57585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1718163	1718163	+	Silent	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	.	NM_020825	exon17	c.C3303T	p.I1101I	CTCCATCATTGAG	.	129	36	102	0	.	11	7	4	0	0
MKL2	57496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	14342808	14342808	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MKL2-95	NM_014048	exon13	c.C2123G	p.T708S	TGCAGACTCAGCC	.	109	69	92	1	.	21	10	11	0	0
RPGRIP1L	23322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	53636027	53636027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	RPGRIP1L-91	NM_015272	exon27	c.G3909T	p.Q1303H	GACAGACTGGAGG	.	107	72	89	0	.	9	2	7	0	0
ELMO3	79767	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	67236330	67236330	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ELMO3-90	NM_024712	exon14	c.T1451G	p.M484R	CACCCATGTTCTT	.	239	22	203	0	.	125	117	8	0	0
CDK5RAP3	80279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	46051766	46051766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	CDK5RAP3-226	NM_176096	exon5	c.G286A	p.D96N	ACTCAGGATTGGC	.	144	15	143	0	.	3	2	1	0	0
APPBP2	10513	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	58525181	58525181	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	APPBP2-226	NM_006380	exon13	c.G1519T	p.G507C	CCTCACCAAAAAG	.	149	62	145	0	.	18	9	9	0	0
TRAPPC8	22878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	29488737	29488737	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	TRAPPC8-159	NM_014939	exon7	c.A1102C	p.I368L	GCCTAATTGTTTT	.	73	31	84	0	.	19	10	9	0	0
CNDP2	55748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	72179734	72179734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	CNDP2-93	NM_018235	exon7	c.C709A	p.H237N	TCGGTGCATGAGG	.	108	39	131	0	.	658	351	306	1	0
ZNF236	7776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	74561610	74561610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ZNF236-94	NM_007345	exon2	c.G178A	p.E60K	GATCACGAGCGAA	.	88	38	94	0	.	0	0	0	0	0
FAM108A1	81926	hgsc.bcm.edu	37	19	1881550	1881550	+	Silent	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	FAM108A1-90	NM_031213	exon2	c.C16T	p.L6L	CACTCAGCGACAG	.	38	4	25	2	.	12	12	0	0	0
HNRNPM	4670	ucsc.edu	37	19	8527467	8527467	+	Splice_Site	SNP	T	T	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	HNRNPM-68	NM_031203	exon3	c.336+2T>G	.	CAAGGGTAAGTGT	.	223	1	213	4	.	1	1	0	0	0
MYO1F	4542	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	8609279	8609279	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MYO1F-93	NM_012335	exon14	c.G1426T	p.D476Y	TCTGGTCTGCTCC	.	49	24	55	0	.	5	5	0	0	0
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	13397703	13397703	+	Missense_Mutation	SNP	C	C	T	rs200850308		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	CACNA1A-67	NM_001127221	exon20	c.G3170A	p.R1057H	TCTTGGCGGCCCA	.	54	8	69	0	.	0	0	0	0	0
ZNF780B	163131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	40541550	40541550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ZNF780B-47	NM_001005851	exon5	c.C1216A	p.Q406K	GGTGTTGAATAAG	.	176	79	190	0	.	1	1	0	0	0
RPL18	6141	ucsc.edu	37	19	49118705	49118705	+	Splice_Site	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	RPL18-90	NM_001270490	exon7	c.405-1G>A	.	TAGGGTCTGTGGG	.	200	1	205	0	.	1	1	0	0	0
ZNF320	162967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53384942	53384942	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ZNF320-91	NM_207333	exon4	c.T437C	p.L146S	AAATGCAAATGAA	.	185	80	218	0	.	69	36	33	0	0
ZSCAN22	342945	broad.mit.edu;bcgsc.ca	37	19	58849878	58849878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ZSCAN22-91	NM_181846	exon3	c.G662A	p.R221H	GTGGCCGTGAATC	.	275	8	273	1	.	3	3	0	0	0
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	32667276	32667276	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	BIRC6-233	NM_016252	exon18	c.A4088C	p.H1363P	GAGTTCATTCAAA	.	69	37	74	0	.	5	2	3	0	0
HNRPLL	92906	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	38791355	38791355	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	HNRPLL-91	NM_138394	exon13	c.A1598T	p.K533M	CAAAGCTTCAATG	.	142	69	164	0	.	55	31	24	0	0
SLC3A1	6519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	44508525	44508525	+	Splice_Site	SNP	G	G	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	SLC3A1-90	NM_000341	exon3	c.611-1G>C	.	TCATTAGGTTTAA	.	74	32	90	0	.	3	1	2	0	0
FSHR	2492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	49190328	49190328	+	Silent	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	FSHR-527	NM_000145	exon10	c.C1632T	p.V544V	ACAGATGACCACA	.	38	18	46	0	.	0	0	0	0	0
MRPS5	64969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	95753148	95753148	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MRPS5-92	NM_031902	exon12	c.G1247C	p.G416A	TTCATTCCCTGTG	.	84	41	100	0	.	74	38	36	0	0
IL1RL2	8808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	102836361	102836361	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	IL1RL2-92	NM_003854	exon8	c.A875C	p.E292A	TTCGGGAACATAA	.	98	40	93	0	.	3	3	0	0	0
RND3	390	broad.mit.edu	37	2	151328205	151328205	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	RND3-659	NM_001254738	exon4	c.G419T	p.R140L	TCTGTCCGCAGAT	.	126	4	99	0	.	47	46	1	0	0
TTN	7273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	179517427	179517427	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	TTN-636	NM_001267550	exon201	c.A38996C	p.K12999T	GGCACTTTCTTTT	.	210	95	240	0	.	0	0	0	0	0
FAM171B	165215	hgsc.bcm.edu	37	2	187559029	187559029	+	Silent	SNP	A	A	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	FAM171B-141	NM_177454	exon1	c.A129G	p.Q43Q	CATCCAACAGCAG	.	22	4	34	1	.	0	0	0	0	0
WNT10A	80326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219754716	219754716	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	WNT10A-523	NM_025216	exon3	c.G387C	p.E129D	CCGAGAGAGCGCT	.	119	44	115	0	.	0	0	0	0	0
PLK1S1	55857	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	21142793	21142793	+	Silent	SNP	T	T	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	.	.	.	.	.	GGCATCTCTTCAG	.	175	132	92	0	.	20	7	13	0	0
LAMA5	3911	broad.mit.edu	37	20	60895706	60895706	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	LAMA5-93	NM_005560	exon50	c.T6668G	p.L2223R	GGGCCCAGGGGGC	.	39	8	27	4	.	74	65	9	0	0
NCAM2	4685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	22656582	22656582	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	NCAM2-94	NM_004540	exon3	c.G199T	p.V67L	CAGAGGGTAGTAG	.	70	24	71	0	.	1	0	1	0	0
TTC3	7267	broad.mit.edu	37	21	38536463	38536463	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	TTC3-590	NM_001001894	exon32	c.G3281A	p.R1094H	TTGTCCGCAATAA	.	96	4	94	0	.	42	42	0	0	0
BCL2L13	23786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	18138590	18138590	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	BCL2L13-652	NM_001270732	exon2	c.C113T	p.S38L	TTTCCTCACCCCA	.	34	33	82	0	.	0	0	0	0	0
PI4KA	5297	bcgsc.ca	37	22	21073055	21073055	+	Silent	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	PI4KA-454	NM_058004	exon44	c.C5172T	p.S1724S	TGGGCCGGACAAG	.	50	4	71	0	.	30	22	0	8	0
NR1D2	9975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	24003534	24003534	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	NR1D2-227	NM_005126	exon5	c.T584G	p.M195R	GTGCAATGAAGAC	.	60	26	70	0	.	16	10	6	0	0
SCN11A	11280	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	38889146	38889146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	SCN11A-99	NM_014139	exon26	c.G4415A	p.R1472Q	AGGATTCGGCCAA	.	37	4	47	0	.	0	0	0	0	0
TGM4	7047	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	44935102	44935102	+	Missense_Mutation	SNP	G	G	A	rs147559877		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	TGM4-91	NM_003241	exon5	c.G464A	p.R155H	ACGAGCGCAAAGA	.	82	36	90	0	G|1.000;A|0.000	0	0	0	0	0
LZTFL1	54585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	45874547	45874547	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	LZTFL1-90	NM_020347	exon5	c.A451C	p.N151H	CCTTGTTTAGGAG	.	98	35	134	0	.	0	0	0	0	0
USP4	7375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49362339	49362339	+	Silent	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	USP4-660	NM_199443	exon5	c.A621G	p.L207L	CTGGTATAGCCCA	.	204	99	276	0	.	3	2	1	0	0
CNTN3	5067	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	74350871	74350871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	CNTN3-137	NM_020872	exon14	c.C1872A	p.N624K	GCTATGGTTGTCT	.	103	48	125	0	.	6	1	5	0	0
PIK3CB	5291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	138456588	138456588	+	Silent	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	PIK3CB-1311	NM_006219	exon4	c.A762G	p.V254V	ATATTCTACTCTC	.	108	56	118	0	.	21	10	11	0	0
RNF168	165918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	196214405	196214405	+	Silent	SNP	G	G	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	RNF168-90	NM_152617	exon3	c.C423A	p.A141A	TTCACTGGCTTTG	.	215	105	231	0	.	16	8	8	0	0
DRD5	1816	hgsc.bcm.edu	37	4	9784112	9784112	+	Silent	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	DRD5-91	NM_000798	exon1	c.T459C	p.T153T	GATGACTCAGCGC	.	38	2	54	0	.	0	0	0	0	0
TLR6	10333	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	38830116	38830116	+	Missense_Mutation	SNP	C	C	A	rs3796508	byfrequency;alternate_allele	TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	TLR6-524	NM_006068	exon2	c.G979T	p.V327L	AAAACACGGTGTA	.	72	33	80	0	C|0.981;T|0.019	0	0	0	0	0
YTHDC1	91746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	69203291	69203291	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	YTHDC1-92	NM_001031732	exon3	c.A458C	p.E153A	ACTACCTCAGAAC	.	75	38	78	0	.	7	1	6	0	0
ENAM	10117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	71510231	71510231	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ENAM-93	NM_031889	exon9	c.C3088T	p.P1030S	TCCAATCCAGAAG	.	129	59	127	0	.	4	1	3	0	0
ANXA3	306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	79512751	79512751	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ANXA3-90	NM_005139	exon7	c.C457T	p.R153W	GACTTCCGGAAAG	.	287	114	271	0	.	223	132	91	0	0
MTRR	4552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	7873543	7873543	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MTRR-91	NM_024010	exon3	c.G268A	p.G90R	GGCACCGGAGACC	.	305	81	217	1	.	15	11	4	0	0
TRIO	7204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	14471560	14471560	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	TRIO-562	NM_007118	exon38	c.C5897T	p.S1966F	CCAGCTCTTTAAA	.	124	89	106	0	.	13	7	6	0	0
RICTOR	253260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	38954924	38954924	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	RICTOR-849	NM_152756	exon27	c.T2649G	p.Y883X	TTGTCCATAAAGG	.	255	148	132	0	.	5	4	1	0	0
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	67588178	67588178	+	Silent	SNP	A	A	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	PIK3R1-4332	NM_181523	exon8	c.A1008G	p.G336G	CTGGGGAGATATC	.	225	74	177	0	.	0	0	0	0	0
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	67591286	67591286	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	PIK3R1-4332	NM_181523	exon14	c.A1784T	p.N595I	AGTTGAACGAGTG	.	126	39	87	0	.	168	111	57	0	0
KIAA0825	285600	bcgsc.ca	37	5	93856363	93856363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	KIAA0825-91	NM_173665	exon5	c.A560G	p.Q187R	ATTTTTTGCTGTG	.	161	26	105	0	.	1	1	0	0	0
ACSL6	23305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	131324510	131324510	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ACSL6-229	NM_001009185	exon6	c.A640T	p.I214F	TGATGATGTAGCG	.	304	104	220	0	.	0	0	0	0	0
BTNL8	79908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	180374575	180374575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	BTNL8-24	NM_001159708	exon4	c.G737A	p.G246D	GCTGTGGCCTATT	.	755	485	570	0	.	0	0	0	0	0
MTCH1	23787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	36949411	36949411	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MTCH1-227	NM_014341	exon2	c.A359T	p.N120I	AGCACATTGGTCC	.	21	21	71	0	.	232	3	229	0	0
C7orf43	55262	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99753405	99753405	+	Silent	SNP	G	G	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	C7orf43-90	NM_018275	exon9	c.C1284T	p.A428A	GTCCAGGGCAGCC	.	101	50	102	1	.	19	10	9	0	0
LRRN3	54674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	110763780	110763780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	LRRN3-154	NM_018334	exon2	c.A952G	p.N318D	GCTACTAACAACC	.	107	59	106	0	.	0	0	0	0	0
TNPO3	23534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	128626935	128626935	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	TNPO3-228	NM_012470	exon12	c.A1538T	p.K513M	AGGGGCTTTTCAC	.	128	77	123	0	.	35	18	17	0	0
C8orf76	84933	broad.mit.edu	37	8	124243792	124243792	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	C8orf76-228	NM_032847	exon4	c.C563A	p.S188Y	TTCTGAGATGACG	.	196	6	217	0	.	29	25	4	0	0
PLEC	5339	broad.mit.edu	37	8	144995793	144995793	+	Silent	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	PLEC-141	NM_201380	exon32	c.G8607A	p.A2869A	CGCCTGCGCCTCC	.	55	3	54	0	.	72	72	0	0	0
GBA2	57704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35739010	35739010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	GBA2-94	NM_020944	exon11	c.T1784C	p.I595T	TCCCCAATATCAT	.	33	18	52	0	.	1	0	1	0	0
ZNF169	169841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	97063238	97063238	+	Silent	SNP	C	C	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ZNF169-92	NM_194320	exon5	c.C1398T	p.G466G	GCGTGGCTTTGGT	.	79	38	87	0	.	8	5	3	0	0
C9orf84	158401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	114503767	114503767	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	C9orf84-92	NM_173521	exon9	c.T971A	p.F324Y	AGCAAAAATGGGT	.	103	53	75	0	.	0	0	0	0	0
GSN	2934	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	124074615	124074615	+	Splice_Site	SNP	A	A	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	GSN-154	NM_198252	exon6	c.514-2A>T	.	TCTTCCAGAACAT	.	157	9	159	1	.	0	0	0	0	0
TUBB4B	10383	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	140137389	140137389	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	.	NM_006088	exon4	c.T719C	p.L240P	CCTGCCTGCGCTT	.	52	24	42	0	.	314	173	141	0	0
TENM1	10178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	123519705	123519705	+	Silent	SNP	G	G	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	.	NM_001163278	exon29	c.C5898A	p.T1966T	ATGCAGGGTCTGT	.	124	21	154	0	.	2	2	0	0	0
ZDHHC9	51114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	128963040	128963040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ZDHHC9-131	NM_001008222	exon3	c.C245A	p.T82K	AACAGTGTAGCCA	.	84	82	85	0	.	49	0	49	0	0
INCENP	3619	broad.mit.edu	37	11	61916013	61916015	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	INCENP-227	NM_001040694	exon16	c.2270_2272del	p.757_758del	TGGAGGAGAAGAA	.	15	7	6	0	.	0	0	0	0	0
LINS	55180	hgsc.bcm.edu;bcgsc.ca	37	15	101109778	101109778	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	LINS-92	NM_001040616	exon7	c.1939delA	p.S647fs	.	.	113	22	183	0	.	0	0	0	0	0
DHX57	90957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	39030017	39030017	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	DHX57-228	NM_198963	exon23	c.3857delA	p.K1286fs	.	.	195	83	237	0	.	0	0	0	0	0
XIRP2	129446	hgsc.bcm.edu;bcgsc.ca	37	2	168115244	168115247	+	Frame_Shift_Del	DEL	TTTC	TTTC	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	TTTC	TTTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	XIRP2-104	NM_001199143	exon11	c.2287_2290del	p.763_764del	.	.	92	51	110	0	.	0	0	0	0	0
CASP10	843	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	202073930	202073931	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	CASP10-1086	NM_032977	exon9	c.1060_1061del	p.354_354del	.	.	186	90	218	0	.	0	0	0	0	0
NF2	4771	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	30067890	30067905	+	Frame_Shift_Del	DEL	AGGCTGCTGCAGATGA	AGGCTGCTGCAGATGA	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	AGGCTGCTGCAGATGA	AGGCTGCTGCAGATGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	NF2-4696	NM_000268	exon11	c.1075_1090del	p.359_364del	.	.	35	23	100	0	.	0	0	0	0	0
KIAA0825	285600	broad.mit.edu;bcgsc.ca	37	5	93856355	93856362	+	Frame_Shift_Del	DEL	AAATTTTT	AAATTTTT	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	AAATTTTT	AAATTTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	KIAA0825-91	NM_173665	exon5	c.561_568del	p.187_190del	TCAATAAAATTTT	.	170	24	107	0	.	0	0	0	0	0
KIAA0825	285600	hgsc.bcm.edu	37	5	93856355	93856363	+	In_Frame_Del	DEL	AAATTTTTT	AAATTTTTT	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	AAATTTTTT	AAATTTTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	KIAA0825-91	NM_173665	exon5	c.560_568del	p.187_190del	.	.	172	26	114	0	.	0	0	0	0	0
MRPL22	29093	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	154330411	154330411	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MRPL22-90	NM_014180	exon3	c.108delT	p.S36fs	.	.	184	125	128	0	.	0	0	0	0	0
SNX10	29887	hgsc.bcm.edu;bcgsc.ca	37	7	26412183	26412200	+	Frame_Shift_Del	DEL	GGAATCCTGAAAAATAAT	GGAATCCTGAAAAATAAT	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	GGAATCCTGAAAAATAAT	GGAATCCTGAAAAATAAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	SNX10-226	NM_001199835	exon7	c.597_868del	p.199_202del	.	.	154	45	190	0	.	0	0	0	0	0
GBAS	2631	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	56045954	56045955	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	GBAS-514	NM_001483	exon2	c.228_229del	p.76_77del	.	.	148	80	187	0	.	0	0	0	0	0
STMN4	81551	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	27097566	27097566	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	STMN4-154	NM_030795	exon6	c.513delA	p.K171fs	.	.	173	76	186	0	.	0	0	0	0	0
AMBP	259	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	116837296	116837296	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	AMBP-91	NM_001633	exon3	c.281delC	p.T94fs	.	.	99	46	98	0	.	0	0	0	0	0
RABGAP1	23637	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	125772734	125772738	+	Frame_Shift_Del	DEL	TTCAG	TTCAG	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	TTCAG	TTCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	RABGAP1-500	NM_012197	exon11	c.1476_1480del	p.492_494del	.	.	71	25	73	0	.	0	0	0	0	0
ZER1	10444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	131515779	131515779	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ZER1-91	NM_006336	exon4	c.410delT	p.F137fs	.	.	57	26	77	0	.	0	0	0	0	0
RLF	6018	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	40705390	40705391	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	RLF-93	NM_012421	exon8	c.5016_5017insT	p.L1672fs	.	.	103	54	130	0	.	0	0	0	0	0
ZC3H13	23091	broad.mit.edu;bcgsc.ca	37	13	46543501	46543502	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ZC3H13-92	NM_015070	exon14	c.3178_3179insA	p.E1060fs	TATCTTCTTTTTT	.	189	21	151	0	.	0	0	0	0	0
MBIP	51562	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	36770005	36770006	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	MBIP-658	NM_016586	exon8	c.913_914insA	p.V305fs	.	.	21	11	36	0	.	0	0	0	0	0
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	76587277	76587278	+	Frame_Shift_Ins	INS	-	-	GC	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	CNTNAP4-70	NM_138994	exon21	c.3321_3322insGC	p.K1107fs	.	.	43	25	21	0	.	0	0	0	0	0
GAGE2A	729447	broad.mit.edu	37	X	49208295	49208296	+	In_Frame_Ins	INS	-	-	TAT	rs33925578		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	.	NM_001127212	exon2	c.24_25insTAT	p.T8delinsTY	ATCGACCTATCGG	.	596	4	644	0	.	0	0	0	0	0
PARL	55486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183551347	183551348	+	Missense_Mutation	DNP	CT	CT	GG	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	PARL		exon9	c.A960C	p.A321P	TCCTGCTGTATCC	.	101.0	43.0	132.0	1.0	.	0	0	0	0	0
ATP10B	23120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	160113261	160113262	+	Missense_Mutation	DNP	GG	GG	TC	novel		TCGA-EV-5902-01A-11D-1589-08	TCGA-EV-5902-10A-01D-1589-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	05c0e7bb-5be8-4e8d-9724-8063e99cc058	c49e0138-d7e1-4094-9d2d-b41239dea126	.	ATP10B		exon6	c.C294G	p.FL98LM	GAACAGGAAATAG	.	57.0	12.0	38.0	0.0	.	0	0	0	0	0