Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 ESPN 83715 hgsc.bcm.edu 37 1 6500833 6500833 + Missense_Mutation SNP C C G rs3817921 TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . ESPN-514 NM_031475 exon4 c.C823G p.P275A GGGACCCCGCTGC . 10 2 12 2 . 0 0 0 0 0 DRAXIN 374946 broad.mit.edu 37 1 11771907 11771907 + Splice_Site SNP G G A rs147444302 alternate_allele TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . . NM_198545 exon4 c.643-1G>A . TCTCCAGCAGGCA . 27 6 29 0 G|1.000;C|0.000 0 0 0 0 0 CELSR2 1952 hgsc.bcm.edu 37 1 109792762 109792762 + Silent SNP T T C novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . CELSR2-526 NM_001408 exon1 c.T61C p.L21L CTGCTGTTGCTGC . 65 4 57 1 . 61 5 56 0 0 DDX20 11218 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 112303729 112303729 + Missense_Mutation SNP T T G novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . DDX20-227 NM_007204 exon6 c.T944G p.F315C TAGTCTTTTCTAA . 96 39 97 0 . 9 6 3 0 0 RXFP4 339403 broad.mit.edu;bcgsc.ca 37 1 155912175 155912175 + Silent SNP G G A novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . RXFP4-90 NM_181885 exon1 c.G675A p.L225L CTACCTGCTGCTG . 97 10 122 0 . 0 0 0 0 0 DSTYK 25778 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 205132071 205132071 + Silent SNP G G A novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . DSTYK-333 NM_199462 exon5 c.C1621T p.L541L CCCATAGCATCCT . 154 67 147 0 . 10 8 2 0 0 LEFTY1 10637 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 226075314 226075314 + Silent SNP G G A novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . LEFTY1-90 NM_020997 exon3 c.C522T p.G174G CTTCCAGCCGCTC . 76 28 111 1 . 0 0 0 0 0 AGT 183 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 230841791 230841791 + Missense_Mutation SNP C C T novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . AGT-226 NM_000029 exon3 c.G1012A p.E338K CGCTCTCAGTGAA . 171 61 172 1 . 49 17 32 0 0 KIAA1279 26128 ucsc.edu 37 10 70775350 70775350 + Silent SNP G G A novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . KIAA1279-91 NM_015634 exon7 c.G1044A p.R348R TTTAAGGAAAAAA . 99 2 112 0 . 22 19 3 0 0 ERLIN1 10613 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 101911987 101911987 + Silent SNP A A G novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . . NM_006459 exon11 c.T948C p.Y316Y ATCTGAATATTTC . 132 50 127 0 . 28 17 11 0 0 PPFIBP2 8495 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 7669667 7669667 + Missense_Mutation SNP T T C novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . PPFIBP2-273 NM_003621 exon18 c.T1696C p.W566R TGTGCATGGCTGG . 117 44 140 0 . 14 5 9 0 0 SLC22A20 440044 bcgsc.ca 37 11 64985059 64985059 + Missense_Mutation SNP G G T rs113875023 alternate_allele TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . SLC22A20-23 NM_001004326 exon3 c.G539T p.G180V CTTCGGGGGCCGC . 46 10 56 0 G|0.992;A|0.008 0 0 0 0 0 B3GNT6 192134 hgsc.bcm.edu 37 11 76751585 76751585 + Splice_Site SNP T T C novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . . NM_138706 exon3 c.988+1T>C . GCATCCTGGCCCT . 5 3 0 0 . 0 0 0 0 0 KLRC4-KLRK1 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 10539567 10539567 + Missense_Mutation SNP C C T novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . . NM_001199805 exon8 c.G83A p.S28N AAATCACTCTTCT . 56 18 70 0 . 0 0 0 0 0 STK38L 23012 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 27468238 27468238 + Missense_Mutation SNP C C A novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . STK38L-980 NM_015000 exon9 c.C792A p.N264K CATGAACTCAAAG . 116 29 115 1 . 17 13 4 0 0 KRT18 3875 broad.mit.edu 37 12 53344644 53344644 + Missense_Mutation SNP A A G novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . KRT18-91 NM_000224 exon3 c.A611G p.E204G AGATCGAGGCTCT . 18 4 30 0 . 1446 679 764 1 2 KRR1 11103 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 75895546 75895546 + Silent SNP T T C novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . KRR1-92 NM_007043 exon9 c.A960G p.A320A AATAAATGCTTTG . 73 21 87 0 . 22 18 4 0 0 ACACB 32 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 109692084 109692084 + Silent SNP C C T novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . ACACB-98 NM_001093 exon43 c.C6111T p.L2037L ATTCCTCCCATCC . 240 95 321 0 . 12 8 4 0 0 EXOC5 10640 ucsc.edu 37 14 57684753 57684753 + Silent SNP C C T novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . EXOC5-137 NM_006544 exon15 c.G1560A p.K520K TTTTTTCTTCTGA . 71 1 96 0 . 16 14 2 0 0 CDAN1 146059 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 43024004 43024004 + Missense_Mutation SNP C C T novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . CDAN1-92 NM_138477 exon11 c.G1553A p.G518D CCAGCACCACCAG . 94 26 80 0 . 2 2 0 0 0 PSTPIP1 9051 hgsc.bcm.edu 37 15 77328195 77328195 + Silent SNP A A G novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . PSTPIP1-23 NM_003978 exon14 c.A1038G p.T346T CTACACAGCCATC . 32 3 60 0 . 10 10 0 0 0 TSC2 7249 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 2138135 2138135 + Missense_Mutation SNP G G A rs201206500 TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . TSC2-1908 NM_000548 exon40 c.G5155A p.A1719T CTGCACGCAAATG . 121 41 160 1 G|1.000;A|0.000 0 0 0 0 0 MGRN1 23295 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 4731570 4731570 + Missense_Mutation SNP C C A novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . MGRN1-92 NM_015246 exon13 c.C1151A p.P384H TCCCACCTGGCTA . 83 24 94 1 . 104 53 51 0 0 PDXDC1 23042 ucsc.edu;bcgsc.ca 37 16 15130101 15130101 + Nonsense_Mutation SNP C C A novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . PDXDC1-91 NM_015027 exon23 c.C2336A p.S779X ACCACTCACAGGT . 167 49 241 2 . 102 43 59 0 0 STARD3 10948 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 37817259 37817259 + Nonsense_Mutation SNP G G T novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . STARD3-90 NM_006804 exon13 c.G1060T p.E354X CGCATTGAGCGGC . 102 42 124 2 . 18 17 1 0 0 TMC8 147138 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 76133427 76133427 + Silent SNP T T G novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . TMC8-90 NM_152468 exon10 c.T1239G p.V413V CAACGTTTGTGAC . 203 76 212 1 . 0 0 0 0 0 APC2 10297 hgsc.bcm.edu 37 19 1469819 1469819 + Silent SNP G G C novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . APC2-290 NM_005883 exon15 c.G6519C p.T2173T CTCCACGCCCGAG . 3 3 2 1 . 0 0 0 0 0 RAB3D 9545 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 11447891 11447891 + Missense_Mutation SNP T T A novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . RAB3D-653 NM_004283 exon2 c.A185T p.K62M ACGGTCTTGACCT . 395 130 451 2 . 22 11 11 0 0 FOSL2 2355 ucsc.edu 37 2 28631654 28631654 + Missense_Mutation SNP G G A novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . FOSL2-712 NM_005253 exon3 c.G383A p.R128H AGCGTCGCATCCG . 42 4 47 0 . 251 251 0 0 0 NRXN1 9378 hgsc.bcm.edu 37 2 50574025 50574025 + Silent SNP G G C novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . NRXN1-92 NM_138735 exon1 c.C63G p.G21G GCCGCCGCCGCCG . 4 3 2 1 . 1 1 0 0 0 CXCR1 3577 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 219029397 219029397 + Missense_Mutation SNP G G C novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . CXCR1-658 NM_000634 exon2 c.C538G p.P180A TGTTTGGATGGTA . 44 14 77 1 . 0 0 0 0 0 CXCR1 3577 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 219029403 219029403 + Missense_Mutation SNP A A T novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . CXCR1-658 NM_000634 exon2 c.T532A p.Y178N GATGGTAAGCCTG . 36 13 63 1 . 0 0 0 0 0 PTPRA 5786 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 3016489 3016489 + Silent SNP G G T novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . PTPRA-227 NM_002836 exon26 c.G2100T p.V700V TGAAGTGGGCATC . 115 34 127 1 . 91 49 42 0 0 CST9L 128821 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 23548869 23548869 + Silent SNP G G T novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . CST9L-90 NM_080610 exon1 c.C219A p.I73I ATTCAAGATGTGC . 66 19 81 0 . 0 0 0 0 0 PFKL 5211 broad.mit.edu 37 21 45741733 45741733 + Missense_Mutation SNP G G A novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . PFKL-251 NM_002626 exon13 c.G1313A p.G438D ACGATGGCTTCGA . 163 6 199 0 . 186 181 5 0 0 SGSM3 27352 hgsc.bcm.edu 37 22 40804935 40804935 + Splice_Site SNP A A G novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . SGSM3-494 NM_015705 exon19 c.1903-2A>G . GTTCCCAGGCTGT . 30 2 42 1 . 0 0 0 0 0 CTDSPL 10217 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 38009318 38009318 + Missense_Mutation SNP C C G novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . CTDSPL-90 NM_001008392 exon5 c.C371G p.P124R TCTAGCCTATTAG . 54 13 63 0 . 0 0 0 0 0 FYCO1 79443 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 46008824 46008824 + Missense_Mutation SNP C C T novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . FYCO1-91 NM_024513 exon8 c.G2002A p.A668T TGCTGGCCTGCTC . 150 62 173 0 . 13 3 10 0 0 IDUA 3425 hgsc.bcm.edu 37 4 980971 980971 + Missense_Mutation SNP T T G rs10794537 TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . IDUA-91 NM_000203 exon1 c.T99G p.H33Q GGTGCATGTGGAC . 2 2 0 0 T|0.175;G|0.825 7 0 7 0 0 FNIP2 57600 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 159825696 159825696 + Silent SNP A A G novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . FNIP2-68 NM_020840 exon17 c.A3345G p.X1115X CTTATAAGCTAAA . 121 46 172 0 . 14 9 5 0 0 SH3RF1 57630 hgsc.bcm.edu 37 4 170043337 170043337 + Silent SNP A A G novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . SH3RF1-567 NM_020870 exon7 c.T1260C p.A420A AGCAGCAGCGGCG . 50 3 76 0 . 15 15 0 0 0 ZCCHC10 54819 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 132334373 132334373 + Missense_Mutation SNP A A G novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . ZCCHC10-90 NM_017665 exon4 c.T415C p.S139P AATCAGAGGAGGA . 82 20 99 1 . 21 12 9 0 0 PCDHGB3 56102 hgsc.bcm.edu 37 5 140751166 140751166 + Missense_Mutation SNP A A G novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . . NM_018924 exon1 c.A1205G p.Y402C ACACATACAGGTT . 57 3 107 0 . 1 1 0 0 0 RBM27 54439 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 145610424 145610424 + Missense_Mutation SNP C C A novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . RBM27-70 NM_018989 exon6 c.C794A p.S265Y ATAGCTCTTCCAA . 97 37 118 0 . 6 5 1 0 0 ARSI 340075 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 149677576 149677576 + Missense_Mutation SNP G G A novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . ARSI-92 NM_001012301 exon2 c.C911T p.S304L CCCCCCGAGAAAG . 71 28 94 0 . 0 0 0 0 0 F12 2161 broad.mit.edu;bcgsc.ca 37 5 176830985 176830985 + Silent SNP G G A rs148322446 alternate_allele TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . F12-90 NM_000505 exon10 c.C1125T p.G375G CAGCCCGCCAACG . 28 16 44 0 G|1.000;C|0.000 0 0 0 0 0 NDUFAF4 29078 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 97344647 97344647 + Silent SNP A A G novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . NDUFAF4-91 NM_014165 exon2 c.T213C p.D71D TTTGGAATCAACA . 114 32 128 0 . 12 5 7 0 0 CALU 813 broad.mit.edu 37 7 128407599 128407599 + Missense_Mutation SNP C C A novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . CALU-90 NM_001199671 exon7 c.C757A p.R253S AAGAACCGTGATG . 134 5 141 0 . 89 89 0 0 0 CHCHD3 54927 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 132709362 132709362 + Missense_Mutation SNP T T A novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . CHCHD3-90 NM_017812 exon3 c.A195T p.R65S AGCTACTCTTCTT . 208 19 200 1 . 62 49 13 0 0 KRBA1 84626 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 149416749 149416749 + Missense_Mutation SNP C C T novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . KRBA1-91 . . . . ACGAGACGCTGGT . 46 10 43 0 . 4 4 0 0 0 PABPC1 26986 hgsc.bcm.edu 37 8 101719226 101719226 + Splice_Site SNP C C G rs112580522 bycluster TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . PABPC1-68 NM_002568 exon11 c.1337-1G>C . GGAATGCTGCATT . 54 6 63 1 G|1.000;|0.000 0 0 0 0 0 TG 7038 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 133931710 133931710 + Missense_Mutation SNP T T G novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . TG-145 NM_003235 exon21 c.T4468G p.C1490G TTGGCCTGTGTCC . 109 41 102 0 . 0 0 0 0 0 SMARCA2 6595 hgsc.bcm.edu 37 9 2039761 2039761 + Silent SNP A A G rs13296982 TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . SMARCA2-653 NM_139045 exon4 c.A651G p.Q217Q GCAGCAACAACAG . 41 3 39 0 A|1.000;|0.000 33 33 0 0 0 USP11 8237 hgsc.bcm.edu 37 X 47102998 47102998 + Missense_Mutation SNP T T C novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . USP11-659 NM_004651 exon13 c.T1916C p.L639P ACCGGCTCTCGTA . 24 2 31 0 . 0 0 0 0 0 GNPTAB 79158 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 102159058 102159058 + Frame_Shift_Del DEL A A - novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . GNPTAB-92 NM_024312 exon13 c.1637delT p.V546fs . . 100 33 101 0 . 0 0 0 0 0 LACTB 114294 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 63414861 63414861 + Frame_Shift_Del DEL G G - novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . LACTB-90 NM_171846 exon2 c.384delG p.V128fs . . 106 35 107 0 . 0 0 0 0 0 EPG5 57724 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 18 43464597 43464598 + Frame_Shift_Ins INS - - AA novel TCGA-G7-6792-01A-21D-1961-08 TCGA-G7-6792-10A-01D-1962-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq fcb71dd8-5625-4d0c-9148-b70199b7f6f3 381c414c-def1-4d55-95b5-9071eaf29fa6 . EPG5-580 NM_020964 exon30 c.5289_5290insTT p.F1763fs . . 121 39 143 0 . 0 0 0 0 0