Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 FAM132A 388581 ucsc.edu 37 1 1179654 1179654 + Missense_Mutation SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . FAM132A-68 NM_001014980 exon3 c.G296T p.R99L AGATCCCGCTGGG . 20 4 76 0 . 0 0 0 0 0 XKR8 55113 ucsc.edu 37 1 28290011 28290011 + Silent SNP C C T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . XKR8-90 NM_018053 exon2 c.C297T p.C99C TAGGTGCGTGCAG . 38 4 86 0 . 0 0 0 0 0 ZSCAN20 7579 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 33960785 33960785 + Silent SNP C C T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ZSCAN20-93 NM_145238 exon8 c.C2841T p.I947I GCTCATCACACAC . 39 36 108 0 . 0 0 0 0 0 EIF2D 1939 ucsc.edu 37 1 206785684 206785684 + Silent SNP C C T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . EIF2D-92 NM_006893 exon1 c.G12A p.K4K AAAGGCCTTGGCA . 41 4 127 0 . 15 15 0 0 0 FAM71A 149647 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 212799448 212799448 + Missense_Mutation SNP G G T rs149566937 alternate_allele TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . FAM71A-94 NM_153606 exon1 c.G1229T p.R410M ATGGAAGGGAGCG . 30 23 82 0 . 0 0 0 0 0 URB2 9816 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 229770859 229770859 + Missense_Mutation SNP G G C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . URB2-174 NM_014777 exon4 c.G499C p.A167P GTGGTAGCCCAGT . 25 20 104 1 . 0 0 0 0 0 URB2 9816 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 229770863 229770863 + Missense_Mutation SNP A A G novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . URB2-174 NM_014777 exon4 c.A503G p.Q168R TAGCCCAGTTGTT . 26 21 105 0 . 0 0 0 0 0 MCM10 55388 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 13222572 13222572 + Missense_Mutation SNP A A C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . MCM10-653 NM_182751 exon7 c.A898C p.I300L GGGGTTATATTGA . 192 88 182 0 . 0 0 0 0 0 PCBD1 5092 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 72643783 72643783 + Missense_Mutation SNP T T C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . PCBD1-90 NM_000281 exon4 c.A239G p.H80R CACTCATGGGTGC . 61 20 62 0 . 211 87 124 0 0 ADAM8 101 ucsc.edu 37 10 135080899 135080899 + Missense_Mutation SNP G G A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ADAM8-90 NM_001109 exon21 c.C2276T p.P759L AAGGGTGGGCTGG . 37 4 48 0 . 3 3 0 0 0 OR4C13 283092 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 49974076 49974076 + Silent SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . OR4C13-72 NM_001001955 exon1 c.C102A p.I34I CTACATCAACGCC . 307 35 299 0 . 0 0 0 0 0 NUMA1 4926 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 71723991 71723991 + Missense_Mutation SNP G G T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . NUMA1-633 NM_006185 exon15 c.C4558A p.L1520M CCTCCAGGACCTT . 60 22 130 0 . 152 81 70 0 1 HEBP1 50865 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 13140120 13140120 + Missense_Mutation SNP T T C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . HEBP1-135 NM_015987 exon3 c.A364G p.I122V CCTCAATCTTAAC . 187 75 211 0 . 88 42 46 0 0 PPFIBP1 8496 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 27809595 27809595 + Missense_Mutation SNP A A C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . PPFIBP1-228 NM_177444 exon10 c.A836C p.E279A AATCTGAAGTAAA . 176 79 113 0 . 51 31 20 0 0 GPD1 2819 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 12 50503242 50503242 + Nonsense_Mutation SNP C C G rs116736822 byfrequency;alternate_allele TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . GPD1-90 NM_005276 exon8 c.C990G p.Y330X GTGCTACGAGGGC . 87 26 135 0 C|0.998;T|0.002 1 0 1 0 0 LRIG3 121227 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 59271290 59271290 + Missense_Mutation SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . LRIG3-229 NM_153377 exon15 c.G2428T p.V810F TCACGACACCCAC . 61 39 98 0 . 11 4 7 0 0 ANKRD13A 88455 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 110457067 110457067 + Missense_Mutation SNP T T C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ANKRD13A-90 NM_033121 exon6 c.T668C p.V223A GGGAAGTTGAGCG . 92 39 114 0 . 38 18 20 0 0 N4BP2L2 10443 broad.mit.edu 37 13 33095588 33095588 + Splice_Site SNP T T C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . N4BP2L2-68 NM_033111 exon6 c.187-2A>G . ATGGCCTACACAA . 122 4 101 0 . 5 5 0 0 0 FREM2 341640 broad.mit.edu 37 13 39422803 39422803 + Silent SNP C C G novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . FREM2-100 NM_207361 exon8 c.C6375G p.S2125S TGTCTCCGATTGT . 73 3 65 0 . 0 0 0 0 0 SIX4 51804 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 61190290 61190290 + Missense_Mutation SNP A A C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . SIX4-154 NM_017420 exon1 c.T503G p.I168S TCGAGGATGCTGT . 20 9 26 0 . 3 1 2 0 0 C15orf53 400359 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 38988925 38988925 + Silent SNP G G C rs146995135 byfrequency;alternate_allele TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . C15orf53-492 NM_207444 exon1 c.G117C p.A39A CCAGGCGTCTGTT . 86 32 145 1 G|0.998;T|0.002 0 0 0 0 0 DTWD1 56986 broad.mit.edu 37 15 49926740 49926740 + Missense_Mutation SNP T T G novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . DTWD1-226 NM_001144955 exon4 c.T416G p.L139R TTGCACTCATTTT . 175 6 97 0 . 0 0 0 0 0 C16orf59 80178 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 2511752 2511752 + Silent SNP C C T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . C16orf59-90 NM_025108 exon5 c.C610T p.L204L AGGCACCTGCTGC . 113 29 137 1 . 0 0 0 0 0 CES3 23491 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 67000741 67000741 + Missense_Mutation SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . CES3-517 NM_024922 exon8 c.C1035A p.N345K CAACAACCATGAG . 223 85 248 0 . 1 0 1 0 0 FAM65A 79567 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 67576026 67576026 + Missense_Mutation SNP G G A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . FAM65A-92 NM_001193523 exon13 c.G1397A p.R466Q ACAGTCGGACTCT . 155 35 139 0 . 102 73 29 0 0 CHMP1A 5119 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 89717999 89717999 + Missense_Mutation SNP G G C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . . NM_002768 exon3 c.C83G p.A28G TGCTCCGCCTTGG . 75 43 89 0 . 144 47 97 0 0 TVP23C 201158 ucsc.edu 37 17 15457087 15457087 + Missense_Mutation SNP C C T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . . NM_145301 exon3 c.G152A p.C51Y AGAAGACAGACGA . 444 69 406 57 . 29 6 23 0 0 SLC47A2 146802 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 19610045 19610045 + Missense_Mutation SNP C C G novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . SLC47A2-90 NM_152908 exon9 c.G865C p.G289R AGGGGCCCCAGTC . 65 32 123 1 . 3 2 1 0 0 ZNF207 7756 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 30696350 30696350 + Missense_Mutation SNP A A T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ZNF207-90 NM_001098507 exon11 c.A1201T p.N401Y CAACGTAATCTTC . 96 48 117 0 . 86 44 42 0 0 MPO 4353 ucsc.edu 37 17 56355333 56355333 + Silent SNP C C T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . MPO-156 NM_000250 exon7 c.G1059A p.L353L GTTGCGCAGGTTC . 43 4 93 0 . 0 0 0 0 0 PPM1D 8493 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 58740837 58740837 + Missense_Mutation SNP G G A rs200809297 TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . PPM1D-227 NM_003620 exon6 c.G1742A p.R581Q CCATGCGACGCAG . 104 52 109 0 G|0.999;A|0.001 15 9 6 0 0 SMAD7 4092 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 46447887 46447887 + Missense_Mutation SNP C C T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . SMAD7-414 NM_005904 exon4 c.G1136A p.R379Q TTGGGCCGCTGCA . 66 25 91 0 . 38 24 14 0 0 GATAD2A 54815 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 19613195 19613195 + Missense_Mutation SNP C C T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . GATAD2A-90 NM_017660 exon11 c.C1631T p.T544M TGCACACGTTCAG . 93 36 182 0 . 46 23 23 0 0 ZNF30 90075 broad.mit.edu 37 19 35435141 35435141 + Missense_Mutation SNP G G C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ZNF30-24 NM_001099438 exon5 c.G1274C p.G425A ATACTGGGGAGAA . 35 3 63 0 . 5 5 0 0 0 PRR12 57479 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 50097991 50097991 + Silent SNP G G C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . PRR12-70 NM_020719 exon4 c.G399C p.S133S CATCTCGGGTGCC . 30 15 72 0 . 43 25 18 0 0 GEN1 348654 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 17955658 17955658 + Nonsense_Mutation SNP C C T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . GEN1-359 NM_182625 exon11 c.C1192T p.Q398X CAACTACAGCCAA . 221 106 171 1 . 0 0 0 0 0 GPR113 165082 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 26532908 26532908 + Silent SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . GPR113-94 NM_001145168 exon13 c.G3144T p.V1048V GCAACTCACCAGG . 124 56 139 1 . 0 0 0 0 0 GFPT1 2673 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 69553334 69553334 + Missense_Mutation SNP A A T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . GFPT1-91 NM_001244710 exon20 c.T2087A p.V696E ACAGTCACAGATT . 60 22 46 0 . 35 25 10 0 0 NCKAP5 344148 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 133541732 133541732 + Missense_Mutation SNP C C G novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . . NM_207363 exon14 c.G2652C p.W884C CTGGACCCAGTCC . 85 52 174 0 . 0 0 0 0 0 TANC1 85461 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 160084382 160084382 + Missense_Mutation SNP T T G novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . TANC1-92 NM_033394 exon25 c.T3956G p.F1319C GAAAGTTTCCTCG . 83 41 89 1 . 24 20 4 0 0 ITM2C 81618 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 231741583 231741583 + Silent SNP G G C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ITM2C-90 NM_030926 exon4 c.G462C p.A154A GACTGCGTACCAT . 107 50 169 0 . 1 0 1 0 0 DSN1 79980 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 35399580 35399580 + Missense_Mutation SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . DSN1-92 NM_001145315 exon3 c.G51T p.M17I CTTAGACATCACT . 314 100 231 1 . 11 6 5 0 0 NF2 4771 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 30051666 30051666 + Splice_Site SNP G G A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . NF2-4696 NM_016418 exon6 c.599+1G>A . AGCCAGGTGAGGC . 42 37 91 0 . 0 0 0 0 0 CCR2 729230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 46399085 46399085 + Missense_Mutation SNP T T A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . CCR2-568 NM_001123041 exon2 c.T67A p.F23I ACCACCTTTTTTG . 280 136 280 1 . 1 1 0 0 0 SLC26A6 65010 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 48668741 48668741 + Splice_Site SNP T T C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . SLC26A6-946 NM_001040454 exon8 c.841-2A>G . ATGAGCTGTGGGA . 13 8 24 0 . 1 0 1 0 0 GPX1 2876 ucsc.edu 37 3 49394910 49394910 + Missense_Mutation SNP G G A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . GPX1-68 . . . . GTAGGGGCACACC . 45 4 107 0 . 645 644 1 0 0 ZMYND10 51364 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 50379017 50379017 + Nonsense_Mutation SNP C C T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ZMYND10-279 NM_015896 exon11 c.G1235A p.W412X CAATACCACTCAT . 78 30 126 0 . 0 0 0 0 0 FAM208A 23272 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 56658883 56658883 + Missense_Mutation SNP G G C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . . NM_001112736 exon22 c.C4291G p.Q1431E GTTGCTGTATGTT . 147 58 121 0 . 28 14 14 0 0 ACOX2 8309 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 58517532 58517532 + Silent SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ACOX2-90 NM_003500 exon6 c.G591T p.R197R GGCTGACCGTCCC . 34 18 79 0 . 0 0 0 0 0 ZBTB11 27107 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 101370105 101370105 + Missense_Mutation SNP C C T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ZBTB11-91 NM_014415 exon11 c.G3067A p.V1023I CTAATACATAATT . 168 70 181 0 . 15 6 9 0 0 KIAA2018 205717 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 113376409 113376409 + Missense_Mutation SNP T T C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . KIAA2018-93 NM_001009899 exon7 c.A4120G p.M1374V TGACCATCATTTG . 96 38 112 0 . 2 2 0 0 0 FSTL1 11167 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 120122159 120122159 + Silent SNP A A G novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . FSTL1-90 NM_007085 exon8 c.T624C p.N208N ATCAGCATTTTCA . 156 65 132 0 . 181 91 90 0 0 ETV5 2119 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 185766603 185766603 + Missense_Mutation SNP G G A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ETV5-706 NM_004454 exon13 c.C1358T p.A453V AAGAGGGCATCTG . 43 25 73 0 . 8 7 1 0 0 FAT1 2195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 187539870 187539870 + Missense_Mutation SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . FAT1-34 NM_005245 exon10 c.G7870T p.D2624Y CCTCATCGGCATC . 84 37 79 0 . 75 30 45 0 0 CLPTM1L 81037 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 1335258 1335258 + Missense_Mutation SNP A A G novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . CLPTM1L-153 NM_030782 exon6 c.T710C p.L237P ACGGTGAGGGGCA . 88 32 197 1 . 84 46 38 0 0 HLA-G 3135 ucsc.edu 37 6 29797394 29797394 + Silent SNP G G A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . HLA-G-517 NM_002127 exon5 c.G819A p.V273V GGTGGTGCCTTCT . 61 1 191 0 . 3352 379 2943 21 6 AKAP12 9590 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 151626981 151626981 + Missense_Mutation SNP C C G novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . AKAP12-293 NM_005100 exon3 c.C262G p.L88V GGAGCCCTGAACG . 34 13 48 0 . 21 12 9 0 0 PGAM2 5224 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 44105125 44105125 + Missense_Mutation SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . PGAM2-226 NM_000290 exon1 c.G4T p.A2S GAGTGGCCATGGT . 107 38 136 0 . 2 2 0 0 0 TMED4 222068 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 44621125 44621125 + Missense_Mutation SNP A A G novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . TMED4-90 NM_182547 exon3 c.T310C p.S104P TGTGGGAGGTGAA . 76 41 85 0 . 144 79 65 0 0 ADAM28 10863 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 24209520 24209520 + Silent SNP T T C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ADAM28-228 NM_014265 exon21 c.T2199C p.H733H GCCCCATGTGTAT . 135 56 116 0 . 3 2 1 0 0 BNIP3L 665 hgsc.bcm.edu 37 8 26240664 26240664 + Silent SNP C C G novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . BNIP3L-227 NM_004331 exon1 c.C18G p.V6V CCTAGTCGAGCCG . 37 2 66 0 . 51 51 0 0 0 RAB11FIP1 80223 broad.mit.edu 37 8 37729419 37729419 + Silent SNP C C A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . RAB11FIP1-92 NM_001002814 exon4 c.G2901T p.S967S ATCATCCGATGCG . 176 7 164 0 . 4 4 0 0 0 XKR4 114786 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 8 56435874 56435874 + Silent SNP C C G rs4263738 alternate_allele TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . XKR4-92 NM_052898 exon3 c.C1041G p.A347A CCTGGCCTGGGCC . 39 19 78 0 . 13 5 8 0 0 HNF4G 3174 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 76465335 76465335 + Missense_Mutation SNP T T C novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . HNF4G-187 NM_004133 exon5 c.T518C p.I173T CAAGTATTGGTGA . 120 58 83 0 . 20 13 7 0 0 PTK2 5747 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 141745382 141745382 + Silent SNP C C T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . PTK2-1517 NM_005607 exon22 c.G2064A p.R688R CCTGGGCCGCCTG . 29 15 41 0 . 56 25 30 0 1 C9orf123 90871 broad.mit.edu 37 9 7799724 7799724 + Missense_Mutation SNP C C G novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . C9orf123-90 NM_033428 exon1 c.G11C p.R4P GACAACCGAGACC . 35 4 53 0 . 84 84 0 0 0 SEC61B 10952 bcgsc.ca 37 9 101992685 101992685 + Missense_Mutation SNP G G T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . SEC61B-90 NM_006808 exon4 c.G270T p.W90C CATTTGGGGCAAG . 255 14 216 0 . 71 71 0 0 0 TBC1D13 54662 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 131565636 131565636 + Missense_Mutation SNP C C G novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . TBC1D13-90 NM_018201 exon8 c.C651G p.I217M GTTCATCTACGCC . 65 34 109 0 . 30 16 14 0 0 NXF3 56000 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 102337711 102337711 + Missense_Mutation SNP C C T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . NXF3-205 NM_022052 exon8 c.G757A p.V253I CATGGACGTCCAG . 91 87 155 1 . 0 0 0 0 0 DOCK11 139818 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 117731503 117731503 + Silent SNP A A T novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . DOCK11-93 NM_144658 exon21 c.A2373T p.A791A TGATGCAGAATCA . 91 87 90 0 . 0 0 0 0 0 KIAA1210 57481 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 118223094 118223094 + Missense_Mutation SNP A A G novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . KIAA1210-67 NM_020721 exon11 c.T2099C p.I700T AACTGGATATGAG . 58 50 57 0 . 0 0 0 0 0 PLXNA3 55558 ucsc.edu 37 X 153696321 153696321 + Missense_Mutation SNP G G A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . PLXNA3-132 NM_017514 exon21 c.G3797A p.R1266H AGTCCCGTGTGGC . 33 4 75 0 . 11 11 0 0 0 KRT76 51350 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 53170736 53170736 + Frame_Shift_Del DEL T T - novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . KRT76-154 NM_015848 exon1 c.340delA p.S114fs . . 54 24 72 0 . 0 0 0 0 0 GABRG3 2567 hgsc.bcm.edu 37 15 27777872 27777876 + Frame_Shift_Del DEL TTCTT TTCTT - novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 TTCTT TTCTT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . . NM_033223 exon10 c.1249_1253del p.417_418del . . 42 14 63 0 . 0 0 0 0 0 PSME4 23198 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 54147352 54147352 + Frame_Shift_Del DEL C C - novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . PSME4-275 NM_014614 exon19 c.2398delG p.D800fs . . 468 189 456 0 . 0 0 0 0 0 COL6A6 131873 hgsc.bcm.edu;bcgsc.ca 37 3 130311918 130311918 + Frame_Shift_Del DEL A A - novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . COL6A6-76 NM_001102608 exon15 c.4385delA p.E1462fs . . 395 66 413 0 . 0 0 0 0 0 RGS7BP 401190 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 63905047 63905047 + Frame_Shift_Del DEL T T - novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . RGS7BP-68 NM_001029875 exon6 c.742delT p.F248fs . . 101 38 121 0 . 0 0 0 0 0 FBXL21 26223 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 135276238 135276238 + Targeted_Region DEL A A - novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . FBXL21-226 . . . . . . 62 19 40 0 . 0 0 0 0 0 PLEKHG1 57480 hgsc.bcm.edu;broad.mit.edu 37 6 151152656 151152656 + Frame_Shift_Del DEL T T - novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . PLEKHG1-92 NM_001029884 exon16 c.2409delT p.T803fs . . 127 60 158 0 . 0 0 0 0 0 OPLAH 26873 broad.mit.edu 37 8 145113801 145113801 + Splice_Site DEL T T - novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . OPLAH-68 NM_017570 exon6 c.464-2A>- . GCGGCCTTCCAGA . 6 2 14 0 . 0 0 0 0 0 BHMT 635 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 5 78426827 78426828 + Frame_Shift_Ins INS - - A novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . BHMT-91 NM_001713 exon8 c.1109_1110insA p.P370fs . . 276 105 276 0 . 0 0 0 0 0 IREB2 3658 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 78765688 78765689 + Missense_Mutation DNP GT GT AC novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 GT GT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . IREB2 exon8 c.T989C p.V330T CTTTTGTTACATC . 108.0 49.0 116.0 1.0 . 0 0 0 0 0 ZNF573 126231 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 38230139 38230140 + Nonsense_Mutation DNP CC CC AA novel TCGA-G7-6797-01A-11D-1961-08 TCGA-G7-6797-10A-01D-1962-08 CC CC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq b1bd2e14-32b6-4c57-bad1-59c0591876c2 5df531ff-b58f-4f9b-8103-b154da29a87c . ZNF573 exon5 c.G1251T p.KE359N* GCATTCCTTGCAT . 296.0 132.0 274.0 0.0 . 0 0 0 0 0