Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
C1orf173	127254	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	75114999	75114999	+	Silent	SNP	C	C	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	C1orf173-94	NM_001002912	exon2	c.G24T	p.G8G	AAGTAACCTAAAA	.	76	25	115	0	.	0	0	0	0	0
INTS3	65123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153736638	153736638	+	Silent	SNP	A	A	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	INTS3-93	NM_023015	exon18	c.A1866G	p.L622L	CTGCCTACAGGAG	.	107	46	172	0	.	74	39	35	0	0
DCAF6	55827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	167962583	167962583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	DCAF6-516	NM_001198956	exon7	c.G808A	p.V270I	ATTCTCGTTAGTT	.	56	12	89	0	.	20	17	2	0	1
FAIM3	9214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207085119	207085119	+	Silent	SNP	G	G	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	FAIM3-90	NM_005449	exon4	c.C666G	p.P222P	CGTCTGGGGCTTG	.	97	26	137	0	.	4	4	0	0	0
PIGR	5284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207105817	207105817	+	Silent	SNP	C	C	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	PIGR-92	NM_002644	exon8	c.G1992C	p.R664R	CCTGTGCCGGGCT	.	97	34	157	0	.	985	472	513	0	0
DRD4	1815	hgsc.bcm.edu	37	11	640253	640253	+	Missense_Mutation	SNP	C	C	G	rs200996360		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	DRD4-90	NM_000797	exon3	c.C1004G	p.A335G	GGCGTGCCAAGAT	.	4	4	2	1	C|0.989;G|0.011	0	0	0	0	0
SF3B2	10992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65829382	65829382	+	Silent	SNP	C	C	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	SF3B2-92	NM_006842	exon16	c.C1890A	p.P630P	CCCTCCCCCATGG	.	38	20	64	0	.	306	162	144	0	0
ARAP1	116985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	72406598	72406598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	ARAP1-91	NM_001040118	exon25	c.A3496G	p.S1166G	TCCCACTGGCAGT	.	30	12	69	0	.	0	0	0	0	0
CAPZA3	93661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	18892035	18892035	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	CAPZA3-91	NM_033328	exon1	c.T833A	p.L278Q	TGAATCTGGTGAT	.	83	35	135	0	.	0	0	0	0	0
KRT75	9119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52827640	52827640	+	Missense_Mutation	SNP	C	C	T	rs201256120		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	KRT75-90	NM_004693	exon1	c.G449A	p.R150H	TGCTCGCGCTCCT	.	149	60	192	0	C|0.999;T|0.000	0	0	0	0	0
MLXIP	22877	hgsc.bcm.edu;broad.mit.edu	37	12	122616846	122616846	+	Silent	SNP	C	C	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	MLXIP-92	NM_014938	exon8	c.C1008T	p.F336F	CCTCTTCTCTTCT	.	16	8	29	0	.	0	0	0	0	0
MTUS2	23281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	29600351	29600351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	MTUS2-218	NM_001033602	exon1	c.G1546A	p.V516I	ACATCTGTTGCTG	.	56	25	79	0	.	0	0	0	0	0
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	35733740	35733740	+	Silent	SNP	A	A	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	NBEA-144	NM_015678	exon22	c.A3432C	p.T1144T	TAGTACATCATTT	.	34	5	33	0	.	2	2	0	0	0
TXNDC16	57544	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	52907333	52907333	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	TXNDC16-22	NM_020784	exon19	c.C1952G	p.T651R	ACCAGTGTCAATA	.	39	4	44	0	.	13	13	0	0	0
MORF4L1	10933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	79185887	79185887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	MORF4L1-90	NM_206839	exon10	c.T664C	p.Y222H	CTCTTTTATCTTC	.	96	33	102	0	.	1	1	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	2	2	0	0	T|0.007;C|0.993	1	0	1	0	0
FLYWCH2	114984	hgsc.bcm.edu;bcgsc.ca	37	16	2946458	2946458	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	FLYWCH2-22	NM_001142499	exon3	c.T8G	p.L3R	TGCCCCTGCCCGA	.	33	11	45	0	.	63	63	0	0	0
FLYWCH2	114984	hgsc.bcm.edu;bcgsc.ca	37	16	2946461	2946461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	FLYWCH2-22	NM_001142499	exon3	c.C11A	p.P4H	CCCTGCCCGAGCC	.	40	14	49	0	.	64	64	0	0	0
RBBP6	5930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	24582258	24582258	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	RBBP6-230	NM_006910	exon18	c.A3871C	p.T1291P	AAGCGAACTGTGA	.	63	26	103	0	.	25	17	8	0	0
FBXO31	79791	hgsc.bcm.edu	37	16	87377237	87377237	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	FBXO31-226	NM_024735	exon4	c.C624G	p.Y208X	GTGGCCGTACATG	.	24	2	25	0	.	11	11	0	0	0
CLUH	23277	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	2601830	2601830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	.	NM_015229	exon10	c.G1207A	p.G403S	CGTTGCCGTCAAT	.	18	5	18	0	.	88	48	40	0	0
NPTX1	4884	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	78444656	78444656	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	NPTX1-90	NM_002522	exon5	c.G1256T	p.G419V	GTGGCCCCTCCGT	.	73	10	86	0	.	0	0	0	0	0
PRKCSH	5589	hgsc.bcm.edu	37	19	11558370	11558370	+	Silent	SNP	G	G	A	rs77563879		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	PRKCSH-90	NM_001001329	exon11	c.G966A	p.E322E	GGAGGAGGAAGAA	.	13	4	19	2	.	51	50	1	0	0
ZNF700	90592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12060128	12060128	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	ZNF700-90	NM_001271848	exon4	c.C1298T	p.A433V	GATCTGCCTCACA	.	63	24	75	0	.	14	7	6	1	0
PLEKHG2	64857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39914552	39914552	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	PLEKHG2-274	NM_022835	exon19	c.C2779G	p.L927V	CAAGACCTTCCGG	.	80	32	108	0	.	16	8	8	0	0
ZNF45	7596	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	44418234	44418234	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	ZNF45-91	NM_003425	exon10	c.G1354A	p.G452S	TGAAGCCCTTGCC	.	71	23	128	0	.	7	2	5	0	0
SLC8A2	6543	hgsc.bcm.edu;broad.mit.edu	37	19	47969527	47969527	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	SLC8A2-94	NM_015063	exon2	c.G134A	p.G45E	TAGGACCCCTGGC	.	9	7	10	0	.	2	2	0	0	0
ZNF606	80095	broad.mit.edu	37	19	58490170	58490170	+	Silent	SNP	A	A	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	ZNF606-92	NM_025027	exon7	c.T1878C	p.C626C	TTTATTACATTCA	.	123	4	157	0	.	8	8	0	0	0
PLEKHB2	55041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	131897791	131897791	+	Missense_Mutation	SNP	G	G	C	rs143964327		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	PLEKHB2-92	NM_001267065	exon7	c.G499C	p.V167L	ACTCAAGTTGTCT	.	49	20	61	0	G|1.000;C|0.000	24	13	11	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179567316	179567316	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	TTN-636	NM_001267550	exon107	c.G30298T	p.E10100X	ACACTTCACACTC	.	89	43	140	0	.	0	0	0	0	0
SLC40A1	30061	broad.mit.edu	37	2	190439935	190439935	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	SLC40A1-91	NM_014585	exon3	c.C223G	p.L75V	CTCCCAGGACCAG	.	216	7	305	0	.	49	49	0	0	0
HSPE1	3336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	198365946	198365946	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	HSPE1-226	NM_002157	exon2	c.C152G	p.S51W	TTGGATCGGGTTC	.	23	10	38	0	.	1687	897	790	0	0
NAPB	63908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	23370612	23370612	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	NAPB-91	NM_022080	exon7	c.T532C	p.Y178H	TCTGGTACTGCTC	.	116	52	141	0	.	2	1	1	0	0
LIPI	149998	hgsc.bcm.edu	37	21	15579137	15579137	+	Silent	SNP	T	T	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	LIPI-70	NM_198996	exon1	c.A108G	p.S36S	ATTACCTGATCTC	.	37	2	26	0	.	0	0	0	0	0
RIPK4	54101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43161570	43161570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	RIPK4-947	NM_020639	exon8	c.G1783T	p.V595L	CACTCACCCCCGG	.	91	29	146	0	.	26	8	18	0	0
CCT8L2	150160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	17073382	17073382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	CCT8L2-69	NM_014406	exon1	c.G59A	p.R20K	CTCTCCCTTGGGT	.	32	26	105	0	.	0	0	0	0	0
PLCD1	5333	ucsc.edu;bcgsc.ca	37	3	38050062	38050062	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	PLCD1-226	NM_001130964	exon12	c.G1852T	p.G618W	AGGCCCCGTTGTC	.	26	4	81	0	.	2	2	0	0	0
DNASE1L3	1776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	58179114	58179114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	DNASE1L3-153	NM_004944	exon7	c.A757G	p.S253G	AAACACTGTTTGA	.	58	20	119	0	.	5	5	0	0	0
PHOX2B	8929	hgsc.bcm.edu	37	4	41748007	41748007	+	Silent	SNP	T	T	G	rs17884724		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	PHOX2B-1970	NM_003924	exon3	c.A762C	p.A254A	TGCCGCTGCCGCC	.	2	2	5	1	.	0	0	0	0	0
HERC3	8916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	89575198	89575198	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	HERC3-660	NM_014606	exon7	c.G691T	p.E231X	GATCGAGAATCTC	.	36	26	94	0	.	0	0	0	0	0
C4orf27	54969	ucsc.edu	37	4	170658832	170658832	+	Silent	SNP	G	G	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	C4orf27-92	NM_017867	exon6	c.C715A	p.R239R	GCTCTCGGTACCC	.	40	4	127	0	.	58	58	0	0	0
MYOZ3	91977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	150050078	150050078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	MYOZ3-91	NM_001122853	exon3	c.G94A	p.V32M	CTGAGCGTGCCCC	.	23	16	40	0	.	0	0	0	0	0
KCNK5	8645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	39159334	39159334	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	KCNK5-227	NM_003740	exon5	c.C832T	p.Q278X	TCACCTGCAGGGC	.	150	47	252	0	.	14	9	5	0	0
MB21D1	115004	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	74135070	74135070	+	Silent	SNP	A	A	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	MB21D1-90	NM_138441	exon5	c.T1449C	p.Y483Y	AATAAAATAATTC	.	39	17	73	0	.	0	0	0	0	0
TBP	6908	hgsc.bcm.edu;bcgsc.ca	37	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	TBP-91	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	71	5	94	0	.	23	23	0	0	0
DNAH11	8701	broad.mit.edu;bcgsc.ca	37	7	21630624	21630624	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	DNAH11-146	.	.	.	.	AGAAAAGGAACAC	.	8	6	18	0	.	0	0	0	0	0
CPED1	79974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	120629777	120629777	+	Silent	SNP	C	C	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	.	NM_001105533	exon1	c.C102G	p.T34T	TCTGACCCTCCGA	.	86	36	146	0	.	0	0	0	0	0
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	121679512	121679512	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	PTPRZ1-699	NM_002851	exon20	c.A5507T	p.K1836I	AGAGAAAATGTGA	.	65	35	82	0	.	0	0	0	0	0
SHROOM2	357	broad.mit.edu	37	X	9863548	9863548	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	SHROOM2-198	NM_001649	exon4	c.C1600T	p.R534W	ACAGGACGGTGTT	.	16	6	22	0	.	6	0	6	0	0
MCF2	4168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	138684576	138684576	+	Missense_Mutation	SNP	C	C	T	rs202133857		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	MCF2-227	NM_001171876	exon20	c.G2053A	p.A685T	AAAATGCGCATTC	.	217	69	280	1	C|0.999;T|0.001	0	0	0	0	0
FLYWCH2	114984	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	2946454	2946456	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	FLYWCH2-22	NM_001142499	exon3	c.4_6del	p.2_2del	.	.	29	11	42	0	.	0	0	0	0	0
HLA-DPB1	3115	hgsc.bcm.edu;broad.mit.edu	37	6	33048613	33048613	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	HLA-DPB1-515	NM_002121	exon2	c.265delA	p.N89fs	.	.	56	12	91	0	.	0	0	0	0	0
AIM1	202	broad.mit.edu	37	6	106960616	106960616	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	AIM1-139	NM_001624	exon1	c.400delC	p.P134fs	TCCCCACCCAAGA	.	10	3	15	0	.	0	0	0	0	0
TRPC5	7224	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	111090414	111090416	+	In_Frame_Del	DEL	TCA	TCA	-	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	TCA	TCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	TRPC5-130	NM_012471	exon6	c.1626_1628del	p.542_543del	.	.	150	72	198	0	.	0	0	0	0	0
LAMTOR4	389541	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	99746597	99746598	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	.	NM_001008395	exon1	c.2_3insG	p.M1fs	.	.	86	23	132	0	.	0	0	0	0	0
SLC35G5	83650	broad.mit.edu	37	8	11189695	11189696	+	Splice_Site	INS	-	-	A	novel		TCGA-G7-7501-01A-11D-2201-08	TCGA-G7-7501-10A-01D-2201-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37a54336-f21c-4e13-b4bb-c370f1e563c9	6bab150d-1510-4c7a-bb5d-ff665290e36a	.	.	.	.	.	.	TGAAGACAAAAAA	.	16	6	19	0	.	0	0	0	0	0