Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PER3	8863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	7845603	7845603	+	Silent	SNP	A	A	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	PER3-93	NM_016831	exon2	c.A231C	p.L77L	CACTCTAGATGCC	.	81	19	84	1	.	9	8	1	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12855985	12855985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	PRAMEF1-22	NM_023013	exon4	c.T1265C	p.L422S	ATTCCTTGGTTCG	.	336	13	422	0	.	0	0	0	0	0
PTAFR	5724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	28477260	28477260	+	Silent	SNP	G	G	A	rs146920734		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	PTAFR-90	NM_001164723	exon3	c.C273T	p.N91N	AGCCACGTTGCAC	.	82	29	123	0	G|1.000;A|0.000	12	12	0	0	0
MECR	51102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	29520539	29520539	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	MECR-91	NM_016011	exon10	c.A1117T	p.M373L	ATCACATGGTGAG	.	100	34	138	0	.	42	34	8	0	0
TXLNA	200081	hgsc.bcm.edu;broad.mit.edu	37	1	32646099	32646099	+	Silent	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	TXLNA-92	NM_175852	exon2	c.T153C	p.A51A	CCAGGCTCCTCGG	.	14	4	28	0	.	5	3	2	0	0
CDCA8	55143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	38174030	38174030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	CDCA8-90	NM_001256875	exon10	c.C835T	p.H279Y	CGGACCCACAAAT	.	67	16	88	0	.	2	2	0	0	0
LRRC40	55631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	70671136	70671136	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	LRRC40-91	NM_017768	exon1	c.G88C	p.G30R	ACAGCCCTTGGGG	.	82	8	107	0	.	3	2	1	0	0
ODF2L	57489	hgsc.bcm.edu	37	1	86842001	86842001	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ODF2L-69	NM_001007022	exon8	c.T725C	p.L242S	TTTTTTAAAGCTA	.	32	2	56	0	.	11	11	0	0	0
NTNG1	22854	hgsc.bcm.edu	37	1	107973392	107973392	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	NTNG1-140	NM_001113226	exon6	c.T1108C	p.S370P	GGCCACTCCAATC	.	35	2	35	0	.	0	0	0	0	0
OR6K2	81448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158669896	158669896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	OR6K2-69	NM_001005279	exon1	c.G547A	p.V183M	GCAGCACTGGGAG	.	105	35	132	0	.	0	0	0	0	0
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	176740277	176740277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	PAPPA2-548	NM_020318	exon17	c.G4676T	p.G1559V	AACCAGGGTACTA	.	75	18	120	0	.	6	6	0	0	0
OLAH	55301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	15107661	15107661	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	OLAH-68	NM_018324	exon7	c.G640A	p.G214S	TTTGGAGGCACCC	.	62	17	79	0	.	0	0	0	0	0
SLC5A12	159963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	26725363	26725363	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	SLC5A12-92	NM_178498	exon5	c.T657G	p.N219K	AGATCCATTTGTT	.	172	56	244	0	.	0	0	0	0	0
LRFN4	78999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66625625	66625625	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	LRFN4-90	NM_024036	exon1	c.C410T	p.P137L	TCGCGCCGGGAGC	.	66	18	117	0	.	1	1	0	0	0
LRP5	4041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	68205929	68205929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	LRP5-661	NM_002335	exon20	c.C4127T	p.P1376L	AGCCGCCCTCAGA	.	90	22	107	0	.	67	40	27	0	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49433380	49433380	+	Silent	SNP	C	C	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	MLL2-612	NM_003482	exon32	c.G8067C	p.L2689L	AATCAGCAGCTCT	.	28	10	35	0	.	4	3	1	0	0
POLR3B	55703	broad.mit.edu	37	12	106889911	106889911	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	POLR3B-91	NM_018082	exon24	c.C2792A	p.P931Q	TGAACCCACACGG	.	144	5	156	0	.	6	6	0	0	0
RPH3A	22895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	113306301	113306301	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	RPH3A-519	NM_001143854	exon8	c.C511A	p.P171T	CCTATGCCTATAA	.	63	13	55	0	.	0	0	0	0	0
FBXW8	26259	hgsc.bcm.edu	37	12	117348921	117348921	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	FBXW8-229	NM_012174	exon1	c.C79G	p.R27G	AAGCGGCGACGGC	.	3	3	1	1	.	0	0	0	0	0
CCDC62	84660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	123286278	123286278	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	CCDC62-157	NM_201435	exon9	c.A1585T	p.M529L	GGCCACATGTCTG	.	250	59	270	0	.	0	0	0	0	0
SLC15A4	121260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	129283926	129283926	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	SLC15A4-90	NM_145648	exon7	c.T1451C	p.M484T	CTCTGCATGGACT	.	95	36	107	0	.	37	15	22	0	0
SLITRK1	114798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	84453895	84453895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	SLITRK1-94	NM_052910	exon1	c.C1748T	p.A583V	ATCCTAGCGTACA	.	35	9	36	0	.	2	0	2	0	0
UBAC2	337867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99890774	99890774	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	UBAC2-91	NM_177967	exon2	c.T250C	p.C84R	TCTTTGTGTATGA	.	334	83	442	0	.	39	16	23	0	0
LAMP1	3916	broad.mit.edu	37	13	113960803	113960803	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	LAMP1-514	NM_005561	exon2	c.T65C	p.L22P	CAGGCCTCATGCA	.	178	4	233	0	.	1	1	0	0	0
FOXG1	2290	hgsc.bcm.edu	37	14	29237806	29237806	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	FOXG1-660	NM_005249	exon1	c.T1321C	p.S441P	GCGTCCTCCTCCA	.	55	3	79	0	.	0	0	0	0	0
NEO1	4756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	15	73428245	73428245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	NEO1-116	NM_001172623	exon5	c.G892T	p.V298L	AGATTGGTATTGC	.	16	5	28	0	.	6	3	3	0	0
SCAMP2	10066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75142970	75142970	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	SCAMP2-91	NM_005697	exon6	c.T517A	p.W173R	AGAACCAGGCCAG	.	93	21	123	0	.	87	48	39	0	0
ZSCAN2	54993	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	85159554	85159554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ZSCAN2-91	NM_001007072	exon3	c.G421A	p.V141I	TCCTGCGTACATG	.	65	22	81	0	.	1	1	0	0	0
CHTF18	63922	hgsc.bcm.edu	37	16	845697	845697	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	CHTF18-227	NM_022092	exon17	c.A2188G	p.M730V	AACCGGATGAGCC	.	35	3	27	0	.	0	0	0	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	3	3	0	0	T|0.007;C|0.993	1	0	1	0	0
C16orf59	80178	hgsc.bcm.edu	37	16	2511166	2511166	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	C16orf59-90	NM_025108	exon4	c.G546C	p.Q182H	GGACCAGCAAATG	.	21	2	22	0	.	0	0	0	0	0
ACSM2A	123876	hgsc.bcm.edu;broad.mit.edu	37	16	20482481	20482481	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ACSM2A-91	NM_001010845	exon6	c.C683G	p.P228R	GTCTTCCCAAGAT	.	136	28	152	0	.	805	592	213	0	0
KIAA0556	23247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27761006	27761006	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	KIAA0556-141	NM_015202	exon16	c.T2725A	p.S909T	GACCGCTCCCACC	.	93	22	108	0	.	3	2	1	0	0
SEZ6L2	26470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	29884867	29884867	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	SEZ6L2-92	NM_001243332	exon13	c.A2288T	p.K763I	GCGCATTTGGGGA	.	61	12	78	0	.	0	0	0	0	0
HEATR3	55027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	50104088	50104088	+	Splice_Site	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	HEATR3-92	NM_182922	exon4	c.400-1G>A	.	GTTACAGTGTAGT	.	60	31	68	0	.	0	0	0	0	0
AMFR	267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	56401438	56401438	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	AMFR-1009	NM_001144	exon12	c.G1517T	p.R506L	TCTGACCGCTGGA	.	398	100	360	0	.	0	0	0	0	0
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu	37	16	70866949	70866949	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	HYDIN-92	NM_001270974	exon80	c.A13701T	p.K4567N	CTCAAATTTTTTG	.	52	12	57	1	.	17	10	7	0	0
GRB7	2886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37898588	37898588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	GRB7-848	NM_001242442	exon2	c.A103G	p.S35G	CTTAGCAGCTCTC	.	250	100	295	0	.	61	14	47	0	0
KRT13	3860	broad.mit.edu	37	17	39658827	39658827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	KRT13-95	NM_002274	exon6	c.C1043T	p.T348M	GCCACCGTGTTCT	.	149	5	169	0	.	0	0	0	0	0
CDC27	996	hgsc.bcm.edu	37	17	45234484	45234484	+	Missense_Mutation	SNP	T	T	C	rs202100614		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	CDC27-291	NM_001114091	exon7	c.A637G	p.N213D	ATCTGTTTAATTC	.	26	2	42	1	.	0	0	0	0	0
CDK5RAP3	80279	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	46058013	46058013	+	Silent	SNP	C	C	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	CDK5RAP3-226	NM_176096	exon12	c.C1132T	p.L378L	GATGTCCTGTCTG	.	213	12	231	0	.	197	181	16	0	0
POTEC	388468	broad.mit.edu	37	18	14513764	14513764	+	Missense_Mutation	SNP	C	C	T	rs79575795		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	POTEC-3	NM_001137671	exon10	c.G1430A	p.R477Q	TGTTTCCGGGTAT	.	119	6	121	0	.	0	0	0	0	0
RANBP3	8498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	5941706	5941706	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	RANBP3-272	NM_007322	exon5	c.A332G	p.E111G	CCATCTTCTCTGT	.	99	30	159	0	.	0	0	0	0	0
CLEC4M	10332	hgsc.bcm.edu	37	19	7830937	7830937	+	Missense_Mutation	SNP	G	G	C	rs59002457		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	CLEC4M-91	NM_014257	exon4	c.G628C	p.E210Q	CTGACGGAGCTGA	.	4	2	1	1	.	0	0	0	0	0
HNRNPM	4670	ucsc.edu	37	19	8527467	8527467	+	Splice_Site	SNP	T	T	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	HNRNPM-68	NM_031203	exon3	c.336+2T>G	.	CAAGGGTAAGTGT	.	164	1	210	1	.	0	0	0	0	0
TMED1	11018	hgsc.bcm.edu;bcgsc.ca	37	19	10945675	10945675	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	TMED1-155	NM_006858	exon3	c.G400C	p.V134L	CTTCGACCTCCTC	.	144	8	204	0	.	43	43	0	0	0
ZNF101	94039	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19789581	19789581	+	Silent	SNP	G	G	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ZNF101-92	NM_033204	exon3	c.G177C	p.L59L	AAACCTGGGGATT	.	42	8	47	0	.	0	0	0	0	0
ZFP14	57677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36831515	36831515	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ZFP14-91	NM_020917	exon5	c.T1213G	p.F405V	TACTAAAGGTCTT	.	118	34	141	0	.	3	3	0	0	0
OTX1	5013	hgsc.bcm.edu	37	2	63282948	63282948	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	OTX1-70	NM_014562	exon5	c.C562G	p.P188A	TCAGCGCCCGCGT	.	40	2	22	0	.	0	0	0	0	0
CIR1	9541	hgsc.bcm.edu;broad.mit.edu	37	2	175215408	175215408	+	Silent	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	CIR1-153	NM_004882	exon9	c.A657G	p.K219K	TTTTTGTTTGGTT	.	67	5	48	0	.	156	153	3	0	0
STK36	27148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219556970	219556970	+	Silent	SNP	C	C	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	STK36-1004	NM_015690	exon15	c.C1869G	p.L623L	TGGGCTCCTTCAT	.	133	70	110	0	.	24	10	14	0	0
ECEL1	9427	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	233350797	233350797	+	Silent	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ECEL1-90	NM_004826	exon2	c.C567T	p.D189D	GCGCATGTCGAGG	.	29	7	15	0	.	0	0	0	0	0
CHGB	1114	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	5903930	5903930	+	Silent	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	CHGB-96	NM_001819	exon4	c.T1140C	p.S380S	GGAGAGTTGGGAT	.	201	48	202	2	.	9	7	2	0	0
BPIFA1	51297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	31825663	31825663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	.	NM_016583	exon2	c.G146A	p.G49E	TTGCAGGAAGCTT	.	104	39	130	0	.	0	0	0	0	0
MIR499A	574501	ucsc.edu;bcgsc.ca	37	20	33578248	33578248	+	RNA	SNP	A	A	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	.	.	.	.	.	CACGTGAACATCA	.	54	27	55	0	.	1	0	1	0	0
TUBB1	81027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	57599037	57599037	+	Silent	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	TUBB1-227	NM_030773	exon4	c.G555A	p.A185A	CAACGCGGTTCTG	.	196	25	195	1	.	1	1	0	0	0
COL6A1	1291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	47423886	47423886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	COL6A1-91	NM_001848	exon35	c.G3046A	p.V1016I	CGCGGTGTCTTCC	.	150	63	150	0	.	309	160	148	0	1
ARVCF	421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	19966432	19966432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ARVCF-91	NM_001670	exon7	c.C1568T	p.S523L	CAGCCCGACGTGT	.	42	8	60	0	.	0	0	0	0	0
GUCD1	83606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	24938994	24938994	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	.	NM_031444	exon6	c.T703A	p.F235I	AGACAAAGAGGAT	.	106	32	169	0	.	67	36	31	0	0
OSM	5008	hgsc.bcm.edu	37	22	30660245	30660245	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	OSM-493	NM_020530	exon3	c.A386G	p.N129S	TCGATGTTCAGCC	.	33	2	36	0	.	20	20	0	0	0
JAGN1	84522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	9934676	9934676	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	JAGN1-91	NM_032492	exon2	c.G167A	p.S56N	AGATGAGCGTGGG	.	79	20	86	0	.	92	64	28	0	0
APEH	327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49720689	49720689	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	APEH-91	NM_001640	exon22	c.A2113G	p.S705G	CCCAAAAGCACCC	.	353	63	332	0	.	445	313	132	0	0
ACY1	95	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52022538	52022538	+	Splice_Site	SNP	A	A	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ACY1-154	NM_001198898	exon12	c.817-2A>C	.	TCCCTCAGAAGTG	.	74	17	72	0	.	8	6	2	0	0
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52554291	52554291	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	STAB1-139	NM_015136	exon52	c.C5484A	p.C1828X	CTCCTGCAGCCGA	.	160	17	165	0	.	0	0	0	0	0
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	108110610	108110610	+	Silent	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	MYH15-73	NM_014981	exon38	c.C5487T	p.S1829S	TACCCTGGATTCT	.	213	38	207	0	.	0	0	0	0	0
FAM162A	26355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	122128621	122128621	+	Silent	SNP	C	C	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	FAM162A-159	NM_014367	exon5	c.C408T	p.N136N	CTTGAACTTAGAA	.	126	55	150	0	.	151	82	69	0	0
PLXNA1	5361	broad.mit.edu	37	3	126730880	126730880	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	PLXNA1-93	NM_032242	exon9	c.A2192C	p.N731T	CACGGAACCTGCC	.	93	14	109	13	.	10	9	1	0	0
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	142238533	142238533	+	Silent	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ATR-1139	NM_001184	exon24	c.C4360T	p.L1454L	GTTCTAGTATTTC	.	152	32	170	0	.	5	5	0	0	0
FXR1	8087	hgsc.bcm.edu	37	3	180693192	180693192	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	FXR1-153	NM_005087	exon16	c.G1695C	p.M565I	AGAAATGGTAAGG	.	27	2	32	0	.	2	2	0	0	0
LNX1	84708	broad.mit.edu;bcgsc.ca	37	4	54362298	54362298	+	Silent	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	LNX1-229	NM_001126328	exon6	c.C1242T	p.G414G	CACACCGCCATCC	.	176	7	181	1	.	2	2	0	0	0
ANP32C	23520	broad.mit.edu	37	4	165118517	165118517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ANP32C-90	NM_012403	exon1	c.T347C	p.L116P	TTGAAAAGGTCTA	.	209	3	165	0	.	162	162	0	0	0
SLC9A3	6550	hgsc.bcm.edu	37	5	475016	475016	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	SLC9A3-90	NM_004174	exon16	c.T2483C	p.L828P	TCGGGGAGGGCGG	.	12	2	16	1	.	14	14	0	0	0
NIPAL4	348938	hgsc.bcm.edu	37	5	156899851	156899851	+	Silent	SNP	C	C	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	NIPAL4-68	NM_001099287	exon6	c.C1284T	p.P428P	TTCTCCCGCCCCG	.	59	4	58	0	.	0	0	0	0	0
EHMT2	10919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31864742	31864742	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	EHMT2-91	NM_025256	exon2	c.G67T	p.A23S	GCAGCGCCCCCAT	.	137	37	202	0	.	10	7	3	0	0
BRD2	6046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32945266	32945266	+	Silent	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	BRD2-398	NM_005104	exon8	c.T1248C	p.A416A	TGCTGCTGATGTA	.	158	41	228	0	.	69	49	20	0	0
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	38913344	38913344	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	DNAH8-615	NM_001206927	exon80	c.T12109C	p.F4037L	CCACAATTTGCAG	.	114	35	134	0	.	0	0	0	0	0
SLC35B2	347734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	44224125	44224125	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	SLC35B2-91	NM_178148	exon3	c.C314G	p.P105R	CACATCGGGGTGG	.	98	30	144	0	.	100	47	53	0	0
MOXD1	26002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	132694134	132694134	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	MOXD1-515	NM_015529	exon3	c.T414G	p.D138E	AGTGCTATCCTGG	.	103	31	120	0	.	0	0	0	0	0
TXLNB	167838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	139563747	139563747	+	Silent	SNP	T	T	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	TXLNB-91	NM_153235	exon10	c.A1971G	p.A657A	TGCTGCTGCTCGT	.	131	42	142	0	.	0	0	0	0	0
PHF10	55274	ucsc.edu	37	6	170117955	170117955	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	PHF10-226	NM_018288	exon4	c.G373T	p.E125X	TTAGCTCTCTCAG	.	42	4	52	0	.	36	36	0	0	0
TWISTNB	221830	ucsc.edu	37	7	19738032	19738032	+	Silent	SNP	C	C	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	TWISTNB-91	NM_001002926	exon4	c.G924A	p.K308K	TTTTTTCTTTTTA	.	304	1	241	3	.	33	29	4	0	0
HOXA10	3206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	27211695	27211695	+	Silent	SNP	C	C	T	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	HOXA10-68	NM_018951	exon2	c.G1056A	p.E352E	CTCCTTCTCCAGC	.	182	80	130	0	.	52	17	35	0	0
NRG1	3084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	32463201	32463201	+	Missense_Mutation	SNP	G	G	A	rs78513616	bycluster	TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	NRG1-525	NM_013962	exon3	c.G1045A	p.A349T	TCAAACGGTAAGA	.	123	21	161	0	G|1.000;A|0.000	0	0	0	0	0
GPR124	25960	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	37692907	37692907	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	GPR124-157	NM_032777	exon12	c.C1824G	p.F608L	GTCCTTCCACATC	.	29	11	30	0	.	0	0	0	0	0
GAPVD1	26130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	128121733	128121733	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	GAPVD1-93	NM_015635	exon25	c.G4087A	p.V1363I	TCTAAAGTAGTGA	.	158	35	145	0	.	26	17	9	0	0
KDM5D	8284	hgsc.bcm.edu	37	Y	21901510	21901510	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	KDM5D-560	NM_001146705	exon6	c.T561G	p.D187E	TTCCTTATCTTTT	.	15	5	15	0	.	4	0	4	0	0
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62293750	62293750	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	AHNAK-109	NM_001620	exon5	c.8139delC	p.D2713fs	.	.	260	83	343	0	.	0	0	0	0	0
CASC5	57082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	40914067	40914068	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	CASC5-660	NM_170589	exon11	c.1683_1684del	p.561_562del	.	.	65	21	94	0	.	0	0	0	0	0
SPTBN5	51332	broad.mit.edu	37	15	42178141	42178141	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	SPTBN5-91	NM_016642	exon7	c.1207delC	p.R403fs	TCTCCCGGAGGGC	.	6	2	12	0	.	0	0	0	0	0
DNMT1	1786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	10250732	10250732	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	DNMT1-660	NM_001130823	exon33	c.3796delT	p.S1266fs	.	.	51	10	84	0	.	0	0	0	0	0
TMED1	11018	hgsc.bcm.edu	37	19	10945675	10945687	+	Frame_Shift_Del	DEL	CCTCCTCGTCATC	CCTCCTCGTCATC	-	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	CCTCCTCGTCATC	CCTCCTCGTCATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	TMED1-155	NM_006858	exon3	c.388_400del	p.130_134del	.	.	134	21	190	0	.	0	0	0	0	0
ZNF776	284309	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	58265245	58265245	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	ZNF776-91	NM_173632	exon3	c.747delT	p.N249fs	.	.	65	17	89	0	.	0	0	0	0	0
MAP3K7CL	56911	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	30547133	30547133	+	Nonsense_Mutation	DEL	T	T	-	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	.	NM_020152	exon9	c.649delT	p.L217X	.	.	65	19	71	0	.	0	0	0	0	0
DAG1	1605	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	49568641	49568641	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	DAG1-92	NM_001177642	exon4	c.697delA	p.N233fs	.	.	49	10	67	0	.	0	0	0	0	0
N4BP2	55728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	40122970	40122970	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	N4BP2-602	NM_018177	exon9	c.3239delA	p.E1080fs	.	.	96	25	101	0	.	0	0	0	0	0
MRPL2	51069	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	43023807	43023820	+	Frame_Shift_Del	DEL	GCCATCTCTCACCT	GCCATCTCTCACCT	-	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	GCCATCTCTCACCT	GCCATCTCTCACCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	MRPL2-90	NM_015950	exon4	c.519_520del	p.173_174del	.	.	45	11	90	0	.	0	0	0	0	0
PON2	5445	broad.mit.edu	37	7	95035516	95035516	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	PON2-90	NM_000305	exon8	c.821delC	p.P274fs	GAGGAAGGATCAA	.	246	13	182	0	.	0	0	0	0	0
KDM3A	55818	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	86716748	86716749	+	In_Frame_Ins	INS	-	-	GGG	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	KDM3A-291	NM_018433	exon23	c.3539_3540insGGG	p.K1180delinsKG	.	.	131	51	140	0	.	0	0	0	0	0
CFHR3	10878	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	196762616	196762617	+	Missense_Mutation	DNP	GA	GA	TT	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	CFHR3		exon6	c.A967T	p.I323L	GAAGGGATAGTGG	.	124.0	9.0	140.0	0.0	.	0	0	0	0	0
CSF2RB	1439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	37334445	37334446	+	Missense_Mutation	DNP	GC	GC	TT	novel		TCGA-G7-7502-01A-11D-2201-08	TCGA-G7-7502-10A-01D-2201-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	ea718e65-433a-4e16-82fc-4f8e5be936af	2c767e98-3e53-4915-a687-2e67bc2cedc5	.	CSF2RB		exon14	c.C2596T	p.P872S	GCTGTGCCCCAGG	.	165.0	38.0	187.0	0.0	.	0	0	0	0	0