Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 WASF2 10163 hgsc.bcm.edu 37 1 27736340 27736340 + Silent SNP A A G rs71584884 alternate_allele TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . WASF2-228 NM_006990 exon8 c.T1185C p.P395P AGGAGGAGGGGGA . 132 7 108 0 A|0.500;T|0.500 25 25 0 0 0 FOXJ3 22887 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 42744042 42744042 + Nonsense_Mutation SNP T T A novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . FOXJ3-228 NM_001198852 exon3 c.A346T p.R116X CCTCTCTATAATA . 88 34 111 0 . 4 4 0 0 0 RHOC 389 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 113244309 113244309 + Silent SNP C C G novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . RHOC-848 NM_175744 exon6 c.G435C p.R145R CATGTCCCGGCCT . 153 59 184 0 . 429 255 173 0 1 IVL 3713 broad.mit.edu 37 1 152882868 152882868 + Missense_Mutation SNP C C G novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . IVL-93 NM_005547 exon2 c.C595G p.Q199E GAGCAGCAGGAGG . 100 8 121 2 . 0 0 0 0 0 CENPF 1063 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 214815619 214815619 + Missense_Mutation SNP A A T novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . CENPF-567 NM_016343 exon12 c.A3938T p.E1313V AGGCTGAAAAGTA . 169 81 204 0 . 0 0 0 0 0 WAPAL 23063 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 88227091 88227091 + Missense_Mutation SNP A A G novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . WAPAL-91 NM_015045 exon9 c.T2315C p.I772T CTTCGGATTTTTT . 114 59 151 0 . 8 4 4 0 0 MUC6 4588 bcgsc.ca 37 11 1016801 1016801 + Missense_Mutation SNP G G C novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . MUC6-23 NM_005961 exon31 c.C6000G p.H2000Q CTGAGGGTGTGAT . 754 20 837 15 . 0 0 0 0 0 LSP1 4046 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 11 1887915 1887915 + Missense_Mutation SNP G G T novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . LSP1-90 NM_001242932 exon2 c.G211T p.D71Y CCAGGGGACGCTG . 52 23 49 0 . 0 0 0 0 0 AHNAK 79026 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 62301415 62301415 + Silent SNP C C T novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . AHNAK-109 NM_001620 exon5 c.G474A p.T158T GTAGGCCGTGACC . 32 19 48 0 . 23 12 11 0 0 CAPN5 726 broad.mit.edu 37 11 76796027 76796027 + Missense_Mutation SNP T T C rs201256547 TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . CAPN5-90 NM_004055 exon2 c.T95C p.F32S CCCTCTTCCCCGC . 62 22 63 17 . 4 4 0 0 0 PIWIL4 143689 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 94341805 94341805 + Silent SNP C C T novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . PIWIL4-91 NM_152431 exon15 c.C1896T p.D632D CAAGGACGTGATG . 162 64 191 0 . 5 4 1 0 0 FAM60A 58516 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 31448170 31448170 + Missense_Mutation SNP G G A novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . FAM60A-90 NM_021238 exon4 c.C226T p.H76Y TAACATGATTCCA . 439 248 440 0 . 0 0 0 0 0 FAM186A 121006 broad.mit.edu 37 12 50746116 50746116 + Missense_Mutation SNP G G A novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . FAM186A-68 NM_001145475 exon4 c.C4499T p.A1500V GCCTGGGCCTGCT . 181 7 135 0 . 0 0 0 0 0 KRT8 3856 broad.mit.edu 37 12 53298675 53298675 + Missense_Mutation SNP A A C novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . KRT8-92 NM_001256282 exon2 c.T175G p.S59A TGCGGGAACCGGG . 94 6 66 2 . 1882 1881 0 0 1 METAP2 10988 broad.mit.edu 37 12 95867964 95867964 + Silent SNP T T G novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . METAP2-90 NM_006838 exon1 c.T9G p.G3G GGCGGGTGTGGAG . 157 41 111 27 . 23 20 3 0 0 KCTD10 83892 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 109889450 109889450 + Silent SNP G G T novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . KCTD10-90 NM_031954 exon7 c.C892A p.R298R TCCTCCGCACGCG . 55 4 41 0 . 28 28 0 0 0 ELL3 80237 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 44067740 44067740 + Missense_Mutation SNP C C T novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . ELL3-91 NM_025165 exon5 c.G552A p.M184I CTGTGCCATGTGC . 60 8 91 0 . 9 9 0 0 0 PEAK1 0 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 77450971 77450971 + Missense_Mutation SNP C C A novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . . NM_024776 exon6 c.G3205T p.D1069Y TGCCATCTTGCTT . 59 25 79 0 . 0 0 0 0 0 CREBBP 1387 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 3860637 3860637 + Silent SNP G G A novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . CREBBP-1807 NM_001079846 exon3 c.C942T p.I314I ATTCTTGATATCT . 108 36 93 0 . 5 5 0 0 0 ABCC1 4363 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 16180696 16180696 + Missense_Mutation SNP G G A novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . ABCC1-94 NM_004996 exon18 c.G2308A p.G770R CTGTCTGGGGGCC . 35 5 47 0 . 8 5 3 0 0 TNRC6A 27327 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 24788620 24788620 + Missense_Mutation SNP C C G rs201630200 alternate_allele TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . TNRC6A-92 NM_014494 exon5 c.C530G p.A177G GCAGTGCTTTAAC . 59 24 57 0 . 8 3 5 0 0 COG4 25839 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 70548271 70548271 + Missense_Mutation SNP A A T novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . COG4-90 NM_015386 exon4 c.T511A p.S171T TGACCGACTTGTC . 44 14 94 0 . 24 12 12 0 0 KIAA0100 9703 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 26943696 26943696 + Missense_Mutation SNP G G C novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . KIAA0100-93 NM_014680 exon35 c.C6097G p.R2033G CACTTCGGCCAGG . 140 85 117 0 . 69 29 40 0 0 HOXB4 3214 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 46654346 46654346 + Missense_Mutation SNP G G T novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . HOXB4-515 NM_024015 exon2 c.C494A p.S165Y GTCCGAGAGCGCT . 101 57 44 0 . 16 5 11 0 0 NOG 9241 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 54672182 54672182 + Missense_Mutation SNP C C G novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . NOG-90 NM_005450 exon1 c.C598G p.L200V GTGCACCTCACGG . 177 105 129 1 . 1 0 1 0 0 KIAA0195 9772 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 73487468 73487468 + Nonsense_Mutation SNP G G T novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . KIAA0195-91 NM_014738 exon13 c.G1318T p.E440X AAGGTGGAGCCCC . 74 22 61 0 . 27 25 2 0 0 SS18 6760 ucsc.edu 37 18 23658090 23658090 + Missense_Mutation SNP G G T novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . SS18-1968 NM_001007559 exon3 c.C181A p.L61I TAGCAAGGTATAC . 42 4 65 0 . 15 15 0 0 0 ACER1 125981 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 6307219 6307219 + Missense_Mutation SNP G G T novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . ACER1-90 NM_133492 exon5 c.C571A p.R191S GCAGACGGTCACT . 34 9 49 0 . 0 0 0 0 0 CAPN12 147968 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 39226808 39226808 + Missense_Mutation SNP C C T novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . CAPN12-91 NM_144691 exon12 c.G1525A p.A509T CGCCGGCGTGGGC . 17 8 20 0 . 7 5 2 0 0 CIC 23152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 42795850 42795850 + Missense_Mutation SNP C C T novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . CIC-591 NM_015125 exon11 c.C2839T p.P947S GTGAGCCCGCCCT . 88 32 69 0 . 39 21 18 0 0 TMEM145 284339 broad.mit.edu 37 19 42819592 42819592 + Missense_Mutation SNP G G T novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . TMEM145-90 NM_173633 exon8 c.G646T p.V216F GTAGAGGGTGAGG . 57 3 72 0 . 0 0 0 0 0 ZNF814 730051 bcgsc.ca 37 19 58385788 58385788 + Missense_Mutation SNP A A G novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 A A - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . . NM_001144989 exon3 c.T970C p.Y324H ATTCATAAGGTCT . 78 6 103 0 . 1 1 0 0 0 SLC3A1 6519 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 44539791 44539791 + Missense_Mutation SNP A A G novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . SLC3A1-90 NM_000341 exon8 c.A1399G p.M467V ATGAACATGCTTC . 121 45 147 0 . 422 213 208 1 0 TM9SF4 9777 broad.mit.edu 37 20 30729306 30729306 + Missense_Mutation SNP T T G novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . TM9SF4-514 NM_014742 exon4 c.T236G p.V79G GAGAGGTGCTGAG . 81 27 51 14 . 0 0 0 0 0 ARFGEF2 10564 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 47587774 47587774 + Silent SNP C C G novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . ARFGEF2-358 NM_006420 exon10 c.C1308G p.L436L ATATCTCTGTGTG . 115 47 98 0 . 3 2 1 0 0 NCAM2 4685 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 22710734 22710734 + Missense_Mutation SNP A A C novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . NCAM2-94 NM_004540 exon8 c.A924C p.K308N GCTTAAAAATGAA . 148 61 188 0 . 0 0 0 0 0 DCBLD2 131566 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 98600601 98600601 + Silent SNP A A G novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . DCBLD2-92 NM_080927 exon2 c.T216C p.C72C GTGTCCACATCCA . 144 51 186 0 . 0 0 0 0 0 EXOSC9 5393 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 122722615 122722615 + Silent SNP C C T rs150604288 alternate_allele TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . EXOSC9-90 NM_001034194 exon1 c.C36T p.R12R ACGCCGCTTCCTA . 112 51 117 0 C|1.000;G|0.000 11 6 5 0 0 ARHGEF28 64283 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 73207182 73207182 + Missense_Mutation SNP A A T novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . . NM_001080479 exon35 c.A4730T p.N1577I CATTTAACACTTT . 132 45 166 0 . 26 12 14 0 0 MAML1 9794 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 179201053 179201053 + Silent SNP G G A novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . MAML1-848 NM_014757 exon5 c.G2226A p.V742V GGGTGTGGCTCAG . 43 17 50 0 . 5 1 4 0 0 DSP 1832 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 7584156 7584156 + Missense_Mutation SNP G G C novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . DSP-518 NM_004415 exon24 c.G6661C p.E2221Q GTCACTGAGCTAG . 54 19 69 0 . 46 20 26 0 0 ZP3 7784 ucsc.edu 37 7 76069823 76069823 + Missense_Mutation SNP T T A novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 T T . . . . Unknown Untested Somatic WXS none Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . ZP3-90 NM_001110354 exon7 c.T955A p.C319S GACATCTGTCAAT . 347 39 218 16 . 3 3 0 0 0 ZAN 7455 broad.mit.edu 37 7 100350474 100350474 + Missense_Mutation SNP T T C novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . ZAN-142 . . . . ACCATCTCCACGG . 558 41 341 23 . 0 0 0 0 0 RBM33 155435 broad.mit.edu 37 7 155532557 155532557 + Missense_Mutation SNP A A C novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . RBM33-23 NM_053043 exon12 c.A1886C p.H629P CACAGCACCCGCC . 58 16 26 5 . 0 0 0 0 0 NAT1 9 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 18080420 18080420 + Silent SNP T T C novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . NAT1-90 NM_001160176 exon4 c.T1050C p.F350F ATTTTTTACTATT . 210 83 278 1 . 6 4 2 0 0 RNF139 11236 broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 125487509 125487509 + Silent SNP C C T novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . RNF139-226 NM_007218 exon1 c.C159T p.L53L CGTGCTCCAGATC . 56 23 75 1 . 19 13 6 0 0 ELAVL2 1993 broad.mit.edu 37 9 23762097 23762097 + Missense_Mutation SNP G G T novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . ELAVL2-516 NM_001171195 exon2 c.C136A p.L46I GAGGAAGGTAGTT . 134 4 166 0 . 0 0 0 0 0 CLTA 1211 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 36209297 36209297 + Silent SNP C C T novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . CLTA-90 NM_001076677 exon5 c.C519T p.F173F ACCCTTCGCTGAC . 89 38 128 0 . 0 0 0 0 0 PRUNE2 158471 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 9 79318374 79318374 + Missense_Mutation SNP G G A novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . PRUNE2-157 NM_015225 exon9 c.C8155T p.H2719Y TGTCATGGGTGAC . 51 32 63 0 . 12 0 12 0 0 RBM3 5935 broad.mit.edu 37 X 48434952 48434952 + Missense_Mutation SNP T T G novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . RBM3-131 NM_006743 exon5 c.T373G p.Y125D GGAGGGTATGGAT . 46 15 64 12 . 310 306 1 3 0 PAQR7 164091 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 26189753 26189755 + In_Frame_Del DEL TTG TTG - novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 TTG TTG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . PAQR7-71 NM_178422 exon2 c.576_578del p.192_193del . . 105 44 105 0 . 0 0 0 0 0 AHDC1 27245 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 27876672 27876673 + Frame_Shift_Del DEL GT GT - novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 GT GT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . AHDC1-90 NM_001029882 exon6 c.1954_1955del p.652_652del . . 41 16 53 0 . 0 0 0 0 0 PRB1 5542 broad.mit.edu 37 12 11506653 11506653 + Frame_Shift_Del DEL T T - novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . PRB1-90 . . . . TTGAGGTCTGTTG . 94 7 63 0 . 0 0 0 0 0 ZNF529 57711 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 37038841 37038841 + Frame_Shift_Del DEL T T - novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . ZNF529-67 NM_001145649 exon6 c.619delA p.T207fs . . 47 15 123 0 . 0 0 0 0 0 MLL3 58508 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 151874152 151874158 + Frame_Shift_Del DEL TTTTTGG TTTTTGG - novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 TTTTTGG TTTTTGG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . MLL3-1398 NM_170606 exon38 c.8380_8386del p.2794_2796del . . 95 30 69 0 . 0 0 0 0 0 PRB1 5542 broad.mit.edu 37 12 11506632 11506633 + In_Frame_Ins INS - - GGA novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . PRB1-90 . . . . CTTTCCTGGAGGT . 79 8 46 0 . 0 0 0 0 0 PRB1 5542 broad.mit.edu 37 12 11506655 11506656 + Frame_Shift_Ins INS - - G novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . PRB1-90 . . . . GAGGTCTGTTGCC . 94 7 63 0 . 0 0 0 0 0 AP1S1 1174 broad.mit.edu 37 7 100802404 100802405 + Frame_Shift_Ins INS - - G novel TCGA-G7-A4TM-01A-11D-A31X-10 TCGA-G7-A4TM-10B-01D-A31X-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7 e79e18b2-3037-4c27-bbeb-21d6df3720fb . AP1S1-226 NM_001283 exon4 c.356_357insG p.M119fs TTTTGATGGGGGG . 110 7 48 0 . 0 0 0 0 0