Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 GRIK3 2899 broad.mit.edu 37 1 37271815 37271815 + Missense_Mutation SNP G G A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . GRIK3-158 NM_000831 exon14 c.C2204T p.A735V AGCAGCGCGTAGT . 159 5 160 0 . 0 0 0 0 0 TTC4 7268 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 55183223 55183223 + Missense_Mutation SNP G G C novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . TTC4-90 NM_004623 exon3 c.G288C p.K96N CTACAAGAAAGCT . 156 55 176 0 . 9 5 4 0 0 CHD1L 9557 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 146747123 146747123 + Silent SNP C C A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . CHD1L-231 NM_004284 exon13 c.C1377A p.G459G CATTGGCCAAAAC . 82 27 90 1 . 0 0 0 0 0 ASH1L 55870 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 155313421 155313421 + Silent SNP G G A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . ASH1L-234 NM_018489 exon23 c.C8094T p.R2698R CTCAATGCGAAAG . 177 64 186 0 . 5 2 3 0 0 LMNA 4000 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 156107474 156107474 + Silent SNP A A C novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . LMNA-228 NM_170707 exon10 c.A1638C p.S546S GCGCTCAGTGACT . 77 29 74 0 . 503 272 230 0 1 AXDND1 126859 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 179339155 179339155 + Missense_Mutation SNP C C G novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . AXDND1-93 NM_144696 exon4 c.C316G p.R106G CCTGTTCGAAGGA . 106 44 104 0 . 0 0 0 0 0 JMJD1C 221037 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 64968540 64968540 + Silent SNP A A G novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . JMJD1C-275 NM_032776 exon10 c.T2889C p.F963F TTCCATAAAAGCT . 28 11 29 0 . 2 1 1 0 0 P4HA1 5033 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 74810906 74810906 + Nonsense_Mutation SNP G G A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . P4HA1-69 NM_001142596 exon7 c.C805T p.Q269X TTTTCTGATCAGA . 65 34 76 0 . 14 14 0 0 0 FAM35A 54537 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 88911776 88911776 + Nonsense_Mutation SNP C C G novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . FAM35A-94 NM_019054 exon3 c.C665G p.S222X ATAAGTCAAGGTC . 113 40 134 0 . 23 17 6 0 0 ACCSL 390110 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 44079985 44079985 + Silent SNP C C T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . ACCSL-95 NM_001031854 exon12 c.C1446T p.L482L TGGCCTCTATGTC . 128 60 116 0 . 0 0 0 0 0 EXPH5 23086 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 108381026 108381026 + Silent SNP T T G novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . EXPH5-95 NM_015065 exon6 c.A5208C p.T1736T GGTGAATGTGATG . 108 41 101 0 . 0 0 0 0 0 MCAM 4162 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 119182661 119182661 + Splice_Site SNP T T A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . MCAM-137 NM_006500 exon11 c.1144-2A>T . CCTGTCTGGGATG . 29 15 39 0 . 0 0 0 0 0 SLC2A14 144195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 7984344 7984344 + Missense_Mutation SNP A A T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . SLC2A14-91 NM_153449 exon5 c.T197A p.I66N TTATTGATAAATT . 191 61 129 0 . 0 0 0 0 0 LRP6 4040 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 12274330 12274330 + Missense_Mutation SNP G G C novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . LRP6-661 NM_002336 exon23 c.C4572G p.H1524Q TGCAAAGTGCCGG . 166 37 120 0 . 2 1 1 0 0 ARID2 196528 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 46244883 46244883 + Missense_Mutation SNP A A T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . ARID2-100 NM_152641 exon15 c.A2977T p.T993S TCCTCTACCCCTC . 393 114 248 0 . 2 2 0 0 0 KRT6B 3854 broad.mit.edu;bcgsc.ca 37 12 52845508 52845508 + Missense_Mutation SNP C C G novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . KRT6B-92 NM_005555 exon1 c.G355C p.A119P CACCAGCAAGGCC . 1117 165 759 1 . 0 0 0 0 0 SRGAP1 57522 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 64521384 64521384 + Nonsense_Mutation SNP C C G novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . SRGAP1-653 NM_020762 exon20 c.C2420G p.S807X CGTTTTCAGACAC . 243 149 220 2 . 0 0 0 0 0 NAV3 89795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 78591182 78591182 + Splice_Site SNP G G C novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . NAV3-279 NM_014903 exon34 c.6380+1G>C . CAAATGGTATGCT . 27 13 21 0 . 0 0 0 0 0 UBE2N 7334 broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 93804921 93804921 + Missense_Mutation SNP T T A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . UBE2N-659 NM_003348 exon2 c.A185T p.Y62F ATTGGGTATTCTT . 346 72 309 1 . 77 57 20 0 0 ATXN2 6311 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 111926345 111926345 + Silent SNP A A G novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . ATXN2-136 NM_002973 exon15 c.T2655C p.V885V AGTCTGAACCCCT . 154 85 99 0 . 27 6 21 0 0 CIT 11113 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 120158284 120158284 + Missense_Mutation SNP T T C novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . CIT-399 NM_001206999 exon30 c.A3839G p.K1280R CTCACCTTTTTCT . 163 88 127 0 . 0 0 0 0 0 VWA8 23078 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 42440068 42440068 + Missense_Mutation SNP C C T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . . NM_015058 exon11 c.G1317A p.M439I TTTAACCATGTGA . 73 36 75 0 . 4 3 1 0 0 TDRD3 81550 broad.mit.edu 37 13 61060035 61060035 + Missense_Mutation SNP G G A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . TDRD3-516 NM_001146070 exon7 c.G670A p.E224K GAATTTGAAAAGC . 49 4 50 0 . 8 8 0 0 0 AP1G2 8906 broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 24030557 24030557 + Silent SNP T T C novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . AP1G2-45 NM_003917 exon19 c.A1941G p.P647P ACCTCCTGGGGAG . 92 37 73 1 . 58 29 29 0 0 SIX4 51804 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 61186919 61186919 + Missense_Mutation SNP T T A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . SIX4-154 NM_017420 exon2 c.A1108T p.I370F CCTGAATAAAAGA . 103 37 110 0 . 0 0 0 0 0 GPHN 10243 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 67647539 67647539 + Missense_Mutation SNP G G A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . GPHN-228 NM_020806 exon23 c.G2195A p.R732H GCAGCCGTCTGAT . 125 58 123 0 . 12 6 6 0 0 CASKIN1 57524 hgsc.bcm.edu;bcgsc.ca 37 16 2239295 2239295 + Missense_Mutation SNP C C A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . CASKIN1-92 NM_020764 exon5 c.G430T p.V144L TGTCCACCATGCA . 77 4 81 0 . 0 0 0 0 0 ACSM1 116285 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 20681301 20681301 + Missense_Mutation SNP A A T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . ACSM1-91 NM_052956 exon5 c.T760A p.L254I TCCGTAATTTCCT . 198 76 208 1 . 0 0 0 0 0 TMEM159 57146 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 21185458 21185458 + Missense_Mutation SNP G G C novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . TMEM159-69 NM_020422 exon4 c.G393C p.W131C CTGCTGGTTTTCT . 127 59 113 0 . 0 0 0 0 0 ZP2 7783 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 21214557 21214557 + Missense_Mutation SNP G G T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . ZP2-91 NM_003460 exon10 c.C988A p.L330I GGAGTAGGCATTT . 54 31 62 0 . 0 0 0 0 0 SETD1A 9739 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 30976286 30976286 + Missense_Mutation SNP C C A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . SETD1A-93 NM_014712 exon7 c.C1223A p.S408Y CACCTTCTTACAC . 63 19 64 0 . 5 2 3 0 0 ATP6V0D1 9114 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 67487539 67487539 + Silent SNP G G A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . ATP6V0D1-90 NM_004691 exon2 c.C210T p.I70I GTCATCGATGACT . 144 63 140 2 . 70 46 24 0 0 THAP11 57215 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 67876718 67876718 + Missense_Mutation SNP G G T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . THAP11-90 NM_020457 exon1 c.G261T p.E87D CAATGAGCGCAAA . 28 12 47 0 . 10 4 6 0 0 TBC1D26 353149 broad.mit.edu 37 17 15641610 15641610 + Missense_Mutation SNP A A G rs202131240 TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . TBC1D26-90 NM_178571 exon7 c.A296G p.Y99C GAGTATACAAAGT . 229 6 157 0 . 0 0 0 0 0 LGALS9 3965 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 25967635 25967635 + Missense_Mutation SNP G G A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . LGALS9-226 NM_009587 exon3 c.G169A p.D57N GGAAATGACATTG . 819 207 609 0 . 13 12 1 0 0 SMARCD2 6603 broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 61910338 61910338 + Missense_Mutation SNP C C A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . SMARCD2-227 NM_001098426 exon13 c.G1556T p.R519M TCCTGCCTTCGCT . 210 113 150 1 . 72 32 40 0 0 WIPI1 55062 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 66440668 66440668 + Silent SNP C C T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . WIPI1-90 NM_017983 exon4 c.G396A p.L132L GGTCTTCAACAGC . 119 31 74 0 . 44 26 18 0 0 RBBP8 5932 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 18 20562277 20562277 + Silent SNP G G A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . RBBP8-659 NM_203292 exon7 c.G525A p.R175R TAACCGGCTACGA . 138 44 112 0 . 10 3 7 0 0 REXO1 57455 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 1817252 1817252 + Missense_Mutation SNP G G C rs200984356 TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . REXO1-90 NM_020695 exon12 c.C3167G p.T1056S GGGTGGGTGTCTC . 68 25 33 0 G|1.000;C|0.000 18 9 9 0 0 LIPE 3991 broad.mit.edu;bcgsc.ca 37 19 42911843 42911843 + Missense_Mutation SNP G G T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . LIPE-154 NM_005357 exon5 c.C1757A p.T586K GTGACCGTGAGCG . 103 45 166 1 . 2 1 1 0 0 TRPM4 54795 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 49714007 49714007 + Silent SNP G G T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . TRPM4-91 NM_017636 exon22 c.G3369T p.T1123T GCTAACGTGGGAA . 125 41 186 0 . 31 12 19 0 0 SIGLEC10 89790 broad.mit.edu;bcgsc.ca 37 19 51918318 51918318 + Missense_Mutation SNP C C G novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . SIGLEC10-91 NM_033130 exon8 c.G1375C p.G459R GCAGACCCTCAGC . 19 7 23 0 . 0 0 0 0 0 TMC4 147798 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 54669261 54669261 + Silent SNP G G T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . TMC4-91 NM_001145303 exon6 c.C855A p.S285S AGCCTCGGACTCC . 52 25 67 0 . 14 10 4 0 0 CAPN13 92291 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 30987162 30987162 + Missense_Mutation SNP A A G novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . CAPN13-136 NM_144575 exon6 c.T535C p.S179P AATAGGATCCGAG . 136 55 102 0 . 0 0 0 0 0 MAP4K3 8491 ucsc.edu;bcgsc.ca 37 2 39553361 39553361 + Missense_Mutation SNP A A T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . MAP4K3-550 NM_001270425 exon9 c.T588A p.D196E CCAGAGATCACAG . 164 68 168 4 . 1 0 1 0 0 XPO1 7514 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 61705989 61705989 + Missense_Mutation SNP T T C novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . XPO1-229 NM_003400 exon25 c.A3182G p.N1061S TGTGGATTAAAGA . 42 20 68 0 . 61 40 21 0 0 FAM161A 84140 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 62067237 62067237 + Missense_Mutation SNP T T C novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . FAM161A-136 NM_032180 exon3 c.A902G p.K301R TTTTGCTTGACTA . 46 21 67 0 . 1 0 1 0 0 RTKN 6242 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 74656034 74656034 + Missense_Mutation SNP A A G novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . RTKN-91 NM_001015055 exon7 c.T791C p.L264P AGGGTGAGTGTGG . 232 68 249 0 . 98 62 35 1 0 DNAH6 1768 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 84846836 84846836 + Silent SNP T T G novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . DNAH6-69 NM_001370 exon24 c.T3600G p.L1200L TGAACTTCTGGAG . 54 23 67 0 . 0 0 0 0 0 DNAH6 1768 broad.mit.edu 37 2 84896615 84896615 + Missense_Mutation SNP G G A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . DNAH6-69 NM_001370 exon38 c.G6287A p.G2096E TTACTGGAATAAC . 77 3 90 0 . 0 0 0 0 0 NEB 4703 hgsc.bcm.edu;bcgsc.ca 37 2 152390040 152390040 + Silent SNP G G T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . NEB-145 NM_001271208 exon144 c.C21438A p.A7146A CATCTTGGCACTA . 56 4 76 0 . 0 0 0 0 0 NEB 4703 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 152536245 152536245 + Missense_Mutation SNP G G C novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . NEB-145 NM_004543 exon32 c.C3245G p.A1082G CTCGCCGCCTGCC . 53 31 55 1 . 0 0 0 0 0 AGPS 8540 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 178257747 178257747 + Missense_Mutation SNP C C T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . AGPS-92 NM_003659 exon1 c.C230T p.A77V CCGCCGCGCAGGA . 53 31 51 0 . 5 3 2 0 0 FSIP2 401024 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 186672719 186672719 + Missense_Mutation SNP T T C novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . FSIP2-90 NM_173651 exon17 c.T18953C p.I6318T GTAAGATTAAACT . 152 14 111 0 . 0 0 0 0 0 SF3B1 23451 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 198265131 198265131 + Missense_Mutation SNP T T C novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . SF3B1-140 NM_012433 exon19 c.A2746G p.T916A CCACTGTGCCAAA . 176 77 178 0 . 106 58 48 0 0 FAM182A 284800 broad.mit.edu 37 20 26061817 26061817 + RNA SNP T T C novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . . . . . . TTCTCCTGCTTAG . 96 3 94 1 . 0 0 0 0 0 FRG1B 284802 bcgsc.ca 37 20 29633899 29633899 + RNA SNP G G A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . FRG1B-22 . . . . ACAAGAGAACCAA . 162 11 152 2 . 0 0 0 0 0 CASS4 57091 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 55033659 55033659 + Missense_Mutation SNP C C A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . CASS4-25 NM_020356 exon6 c.C2217A p.H739Q CAGTCACCTCTGC . 94 11 106 0 . 0 0 0 0 0 SLCO4A1 28231 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 61300283 61300283 + Silent SNP G G A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . SLCO4A1-91 NM_016354 exon11 c.G1878A p.G626G CGCAGGGGGCATC . 20 14 19 0 . 4 0 4 0 0 UMODL1 89766 broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 43547904 43547904 + Missense_Mutation SNP G G T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . UMODL1-93 NM_173568 exon19 c.G4037T p.R1346L AACTCCGCGTCTG . 245 103 201 1 . 0 0 0 0 0 COL18A1 80781 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 46875643 46875643 + Missense_Mutation SNP C C G novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . COL18A1-90 NM_030582 exon1 c.C199G p.R67G ACCCCCCGGAATG . 131 60 159 0 . 1 0 1 0 0 GAB4 128954 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 17488934 17488934 + Missense_Mutation SNP G G A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . GAB4-91 NM_001037814 exon1 c.C71T p.S24L GGCCACGAAGACA . 46 14 49 0 . 0 0 0 0 0 GRIP2 80852 broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 14559362 14559362 + Silent SNP G G A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . GRIP2-69 . . . . GGGCACGCAGGGG . 36 24 31 0 . 0 0 0 0 0 SCN11A 11280 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 38966961 38966961 + Missense_Mutation SNP C C G novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . SCN11A-99 NM_014139 exon5 c.G657C p.L219F CAGGGGCAATAGT . 141 53 132 0 . 0 0 0 0 0 NME6 10201 ucsc.edu 37 3 48338260 48338260 + Silent SNP C C T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . NME6-115 NM_005793 exon3 c.G174A p.L58L TCTCCACAGTAGT . 66 2 55 0 . 3 3 0 0 0 PLXNB1 5364 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 48465285 48465285 + Missense_Mutation SNP C C T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . PLXNB1-293 NM_001130082 exon3 c.G736A p.A246T CATAGGCACGAAA . 188 81 218 0 . 54 25 29 0 0 CACNA2D2 9254 broad.mit.edu;bcgsc.ca 37 3 50513567 50513567 + Silent SNP G G T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . CACNA2D2-278 NM_001174051 exon2 c.C270A p.G90G CTGGACGCCTCCA . 31 10 50 2 . 0 0 0 0 0 NISCH 11188 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 52505969 52505969 + Silent SNP C C T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . NISCH-93 NM_001276293 exon5 c.C549T p.F183F GGACTTCACCTGT . 284 18 323 0 . 12 11 1 0 0 DNAJC13 23317 bcgsc.ca 37 3 132196969 132196969 + Silent SNP T T C novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 T T - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . DNAJC13-272 NM_015268 exon24 c.T2694C p.I898I TATCATTGGAATG . 46 4 37 0 . 3 3 0 0 0 SKIL 6498 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 170078913 170078913 + Missense_Mutation SNP A A T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . SKIL-228 NM_001248008 exon1 c.A794T p.E265V AAGTGGAGCATGA . 190 66 187 0 . 2 2 0 0 0 RUFY3 22902 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 71629308 71629308 + Missense_Mutation SNP G G A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . RUFY3-90 NM_001130709 exon3 c.G572A p.G191E TCTGGGGGCCTCT . 104 50 184 0 . 6 3 3 0 0 DSPP 1834 bcgsc.ca 37 4 88536953 88536953 + Missense_Mutation SNP G G A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . DSPP-90 NM_014208 exon5 c.G3139A p.D1047N AGCAGCGATAGCA . 307 12 227 0 . 0 0 0 0 0 NSUN2 54888 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 6600168 6600168 + Silent SNP G G A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . NSUN2-91 NM_017755 exon19 c.C2175T p.T725T CTGTCCGGTGCTG . 146 64 125 0 . 29 16 13 0 0 FASTKD3 79072 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 7867451 7867451 + Missense_Mutation SNP T T C novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . FASTKD3-156 NM_024091 exon2 c.A746G p.E249G AATGTTTCCAATT . 32 11 31 0 . 2 0 2 0 0 DNAH5 1767 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 13814812 13814812 + Nonsense_Mutation SNP C C A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . DNAH5-182 NM_001369 exon43 c.G7132T p.E2378X GAGGCTCGAAAAT . 128 57 104 2 . 0 0 0 0 0 ZSWIM6 57688 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 60840060 60840060 + Missense_Mutation SNP G G T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . . NM_020928 exon14 c.G3564T p.Q1188H CATTCAGTTTACA . 138 50 136 0 . 4 3 1 0 0 ANKHD1 54882 broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 139906526 139906526 + Missense_Mutation SNP G G A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . ANKHD1-185 NM_017747 exon27 c.G4954A p.V1652M GGTGAAGTGACTC . 149 63 167 1 . 0 0 0 0 0 PCDHB10 56126 bcgsc.ca 37 5 140573413 140573413 + Missense_Mutation SNP A A T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 A A - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . PCDHB10-92 NM_018930 exon1 c.A1288T p.R430W ACACCCAGGCTGA . 143 33 186 1 . 3 3 0 0 0 PHACTR1 221692 broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 13230366 13230366 + Silent SNP C C A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . . NM_030948 exon10 c.C1332A p.P444P CCTTCCCAGGCAG . 185 87 169 1 . 0 0 0 0 0 DPCR1 135656 ucsc.edu;bcgsc.ca 37 6 30917934 30917934 + Missense_Mutation SNP A A G novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . DPCR1-90 NM_080870 exon2 c.A1693G p.R565G GGAGACAGGACTC . 218 74 196 2 . 0 0 0 0 0 MUC21 394263 bcgsc.ca 37 6 30954603 30954603 + Silent SNP G G A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . MUC21-92 NM_001010909 exon2 c.G651A p.T217T CAGAACGACCTCC . 180 13 178 8 . 0 0 0 0 0 DOM3Z 1797 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 31938842 31938842 + Missense_Mutation SNP C C T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . DOM3Z-90 NM_005510 exon3 c.G439A p.E147K AGCCCTCCTGCCG . 88 34 90 0 . 30 14 16 0 0 PGK2 5232 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 49753793 49753793 + Missense_Mutation SNP C C G novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . PGK2-91 NM_138733 exon1 c.G1108C p.V370L CTATAACAGTGAT . 189 53 195 0 . 0 0 0 0 0 ABCA13 154664 bcgsc.ca 37 7 48685099 48685099 + Missense_Mutation SNP G G T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . ABCA13-521 NM_152701 exon62 c.G15168T p.L5056F TCACTTGCCCATC . 76 4 72 0 . 0 0 0 0 0 GIGYF1 64599 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 100279805 100279805 + Missense_Mutation SNP C C T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . GIGYF1-136 NM_022574 exon22 c.G2815A p.D939N TATAATCGTGGAC . 81 5 50 0 . 32 32 0 0 0 FOXP2 93986 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 114302186 114302186 + Missense_Mutation SNP G G A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . FOXP2-295 NM_148898 exon15 c.G1789A p.V597I GGAGCAGTATGGA . 245 53 157 0 . 4 2 2 0 0 KIAA1549 57670 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 138566237 138566237 + Missense_Mutation SNP G G T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . KIAA1549-369 NM_020910 exon11 c.C4126A p.P1376T GCAGTGGCGCTGG . 259 71 196 0 . 5 4 1 0 0 ANK1 286 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 41547822 41547822 + Silent SNP G G A novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . ANK1-716 NM_001142446 exon34 c.C4150T p.L1384L TGCGCAGAAACGA . 136 57 146 0 . 4 2 2 0 0 ZBTB10 65986 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 81412103 81412103 + Silent SNP T T C novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . ZBTB10-522 NM_023929 exon2 c.T1347C p.S449S AATGAGTGAAGTT . 67 21 83 0 . 5 3 2 0 0 WWP1 11059 bcgsc.ca 37 8 87447715 87447715 + Missense_Mutation SNP G G T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . WWP1-659 NM_007013 exon15 c.G1636T p.G546C GAACGCGGCTTTA . 116 18 171 0 . 4 4 0 0 0 JAK2 3717 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 5078361 5078361 + Missense_Mutation SNP G G T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . JAK2-75307 NM_004972 exon16 c.G2048T p.R683I TTATCAGAGAAGA . 71 25 66 1 . 6 4 2 0 0 DDX58 23586 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 9 32459420 32459420 + Nonsense_Mutation SNP G G T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . DDX58-230 NM_014314 exon17 c.C2430A p.C810X CTTTCTGCAGAGC . 47 4 57 0 . 9 6 3 0 0 VPS13A 23230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 79820297 79820297 + Missense_Mutation SNP A A G novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . VPS13A-161 NM_001018038 exon4 c.A256G p.I86V GAAGAAATTTATT . 55 34 59 0 . 0 0 0 0 0 CTSL2 1515 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 99799669 99799669 + Missense_Mutation SNP T T G novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . CTSL2-90 NM_001201575 exon4 c.A261C p.E87D CCTGAATTCTTCA . 114 55 108 0 . 0 0 0 0 0 ALG6 29929 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 63868011 63868011 + Frame_Shift_Del DEL A A - novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . ALG6-90 NM_013339 exon4 c.254delA p.Y85fs . . 37 19 41 0 . 0 0 0 0 0 TDRD1 56165 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 115947630 115947635 + In_Frame_Del DEL AATTTG AATTTG - novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 AATTTG AATTTG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . TDRD1-90 NM_198795 exon2 c.40_45del p.14_15del . . 70 20 95 0 . 0 0 0 0 0 CNTF 1270 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 58391968 58391968 + Frame_Shift_Del DEL T T - novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . CNTF-91 NM_000614 exon2 c.576delT p.H192fs . . 68 28 73 0 . 0 0 0 0 0 RELA 5970 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 65425828 65425840 + Frame_Shift_Del DEL GGAGACACGCACA GGAGACACGCACA - novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 GGAGACACGCACA GGAGACACGCACA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . RELA-872 NM_021975 exon8 c.795_807del p.265_269del . . 78 18 110 0 . 0 0 0 0 0 TSKU 25987 broad.mit.edu;bcgsc.ca 37 11 76507649 76507654 + In_Frame_Del DEL GCTCCA GCTCCA - novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 GCTCCA GCTCCA . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . TSKU-90 NM_015516 exon2 c.989_994del p.330_332del GGCCTGGCTCCAG . 12 6 26 0 . 0 0 0 0 0 BCL2L14 79370 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 12247627 12247628 + Frame_Shift_Del DEL CT CT - novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 CT CT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . BCL2L14-227 NM_138723 exon5 c.708_709del p.236_237del . . 276 71 203 0 . 0 0 0 0 0 RYR3 6263 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 15 34130027 34130027 + Frame_Shift_Del DEL A A - novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . RYR3-520 NM_001036 exon89 c.11846delA p.E3949fs . . 83 45 85 0 . 0 0 0 0 0 KRTAP19-7 337974 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 21 31933587 31933587 + Frame_Shift_Del DEL A A - novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . KRTAP19-7-68 NM_181614 exon1 c.22delT p.Y8fs . . 220 104 198 0 . 0 0 0 0 0 EP300 2033 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 41558757 41558757 + Frame_Shift_Del DEL A A - novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . EP300-2011 NM_001429 exon21 c.3702delA p.R1234fs . . 132 51 134 0 . 0 0 0 0 0 RAF1 5894 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 3 12653543 12653543 + Nonsense_Mutation DEL T T - novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . RAF1-1404 NM_002880 exon3 c.226delA p.M76X . . 118 55 126 0 . 0 0 0 0 0 LRPAP1 4043 broad.mit.edu;bcgsc.ca 37 4 3534063 3534077 + In_Frame_Del DEL CAGGGCCCGAGGAAG CAGGGCCCGAGGAAG - novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 CAGGGCCCGAGGAAG CAGGGCCCGAGGAAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . LRPAP1-92 NM_002337 exon1 c.63_77del p.21_26del GCGGGCCAGGGCC . 31 7 43 0 . 0 0 0 0 0 PCDHB10 56126 bcgsc.ca 37 5 140573408 140573411 + Frame_Shift_Del DEL CACC CACC - novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 CACC CACC - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . PCDHB10-92 NM_018930 exon1 c.1283_1286del p.428_429del TGGGGACACCCAG . 146 33 193 1 . 0 0 0 0 0 PCDHB10 56126 hgsc.bcm.edu 37 5 140573409 140573413 + Frame_Shift_Del DEL ACCCA ACCCA - novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 ACCCA ACCCA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . PCDHB10-92 NM_018930 exon1 c.1284_1288del p.428_430del . . 145 23 188 0 . 0 0 0 0 0 MDN1 23195 broad.mit.edu 37 6 90466095 90466095 + Frame_Shift_Del DEL T T - novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . MDN1-100 NM_014611 exon20 c.2717delA p.Y906fs TCTACATAAAGTT . 39 8 43 0 . 0 0 0 0 0 TRAF3IP2 10758 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 111912891 111912891 + Frame_Shift_Del DEL A A - novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . TRAF3IP2-228 NM_147686 exon2 c.399delT p.F133fs . . 86 32 82 0 . 0 0 0 0 0 DHTKD1 55526 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 12162862 12162863 + Frame_Shift_Ins INS - - T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . DHTKD1-515 NM_018706 exon17 c.2735_2736insT p.D912fs . . 90 37 94 0 . 0 0 0 0 0 EML5 161436 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 14 89171882 89171883 + Frame_Shift_Ins INS - - T novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . EML5-93 NM_183387 exon12 c.1876_1877insA p.V626fs . . 41 18 32 0 . 0 0 0 0 0 CSE1L 1434 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 47705894 47705895 + Frame_Shift_Ins INS - - TT novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . CSE1L-290 NM_001316 exon18 c.1932_1933insTT p.L644fs . . 64 15 73 0 . 0 0 0 0 0 WWP1 11059 broad.mit.edu;bcgsc.ca 37 8 87447714 87447715 + Frame_Shift_Ins INS - - AATTTTT novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 - - . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . WWP1-659 NM_007013 exon15 c.1635_1636insAATTTTT p.R545fs TGAACGCGGCTTT . 120 18 172 0 . 0 0 0 0 0 TTN 7273 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 179598544 179598545 + Missense_Mutation DNP AC AC CA novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 AC AC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . TTN-636 NM_001267550 exon53 c.G15571T p.V3947W CTCTCACAGCAGC . 151.0 65.0 156.0 0.0 . 0 0 0 0 0 MET 4233 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 116415114 116415115 + Missense_Mutation DNP GT GT AG novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 GT GT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . MET-5874 NM_000245 exon15 c.T3209G p.V1088R ATGTAGTGATTGG . 202.0 125.0 132.0 0.0 . 0 0 0 0 0 AASS 10157 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 121717970 121717971 + Missense_Mutation DNP CA CA AG novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 CA CA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . AASS-92 NM_005763 exon23 c.T2583C p.G862W GTCCCCATAAGCC . 222.0 21.0 145.0 0.0 . 0 0 0 0 0 NFASC 23114 broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 204948503 204948504 + Missense_Mutation DNP GT GT AG novel TCGA-GL-A59R-01A-11D-A26P-10 TCGA-GL-A59R-10A-01D-A26P-10 GT GT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq c504d5a9-29b0-4b7e-ac7b-5e543449a0f4 b95ff063-202c-47ad-a9fa-d2f922585ae7 . NFASC-139 NM_001160331 exon17 c.T2026G p.F665V GTCCAGTTTGAAG . 327 119 289 3 . 0 0 0 0 0