Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
PADI4	23569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	17674521	17674521	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	PADI4-70	NM_012387	exon10	c.A1133T	p.E378V	TGAAGGAGTTTCC	.	83	26	129	0	.	0	0	0	0	0
ORC1	4998	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	52849239	52849239	+	Silent	SNP	G	G	A	rs201622141		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	ORC1-206	NM_004153	exon13	c.C1866T	p.L622L	AAGGTCGAGCTGC	.	152	47	196	1	G|0.999;A|0.000	0	0	0	0	0
RWDD3	25950	ucsc.edu;bcgsc.ca	37	1	95710051	95710051	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	RWDD3-91	NM_001128142	exon2	c.A370T	p.S124C	AGTGGCAGTGAAA	.	111	32	133	2	.	19	11	8	0	0
LPPR4	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	99764611	99764611	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	LPPR4-93	NM_001166252	exon4	c.T559C	p.C187R	GGATTATGCTCTA	.	103	39	97	0	.	0	0	0	0	0
NUP210L	91181	bcgsc.ca	37	1	154033034	154033034	+	Silent	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	NUP210L-77	NM_001159484	exon20	c.A2832G	p.E944E	TTCTGCTTCCATG	.	64	14	100	0	.	0	0	0	0	0
KCNN3	3782	hgsc.bcm.edu	37	1	154842253	154842253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	KCNN3-91	NM_001204087	exon1	c.C188A	p.P63H	TGCGGAGGCTGAG	.	62	15	81	0	.	0	0	0	0	0
THBS3	7059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155172114	155172114	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	THBS3-222	NM_007112	exon9	c.C1036T	p.R346X	ACCCTCGAGGACA	.	151	41	193	0	.	5	4	1	0	0
NIT1	4817	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161089159	161089159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	NIT1-90	NM_001185092	exon3	c.G334A	p.E112K	TTGGAAGAATACA	.	64	20	101	3	.	17	11	6	0	0
PAPPA2	60676	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	176525851	176525851	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	PAPPA2-548	NM_021936	exon2	c.G393A	p.G131G	GGTAGGGGATAGT	.	152	12	148	0	.	0	0	0	0	0
FMN2	56776	hgsc.bcm.edu	37	1	240371469	240371469	+	Silent	SNP	C	C	T	rs199920451		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	FMN2-145	NM_020066	exon5	c.C3357T	p.P1119P	CATACCCCCTCCT	.	26	6	38	0	C|0.999;T|0.001	0	0	0	0	0
AHCTF1	25909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247053281	247053281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	AHCTF1-97	NM_015446	exon17	c.G2158A	p.E720K	AACGCTCAAACTT	.	47	13	60	0	.	0	0	0	0	0
KIN	22944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	7811178	7811178	+	Splice_Site	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	KIN-230	NM_012311	exon9	c.798+1G>A	.	ACTGTACCTCCAT	.	23	8	21	0	.	0	0	0	0	0
KIAA1217	56243	broad.mit.edu;bcgsc.ca	37	10	24834831	24834831	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	KIAA1217-98	NM_019590	exon21	c.G5410A	p.A1804T	ATTCCAGCCCTTT	.	161	6	179	0	.	15	15	0	0	0
PLCE1	51196	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	96005839	96005839	+	Missense_Mutation	SNP	A	A	G	rs200483837	alternate_allele	TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	PLCE1-229	NM_016341	exon8	c.A2557G	p.I853V	CTGTCCATCCAAG	.	219	21	214	2	A|0.999;T|0.000	0	0	0	0	0
HPS1	3257	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	100177417	100177417	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	HPS1-91	NM_000195	exon20	c.C2007T	p.A669A	GTGCAGGGCCAGC	.	217	61	260	1	.	76	50	26	0	0
ABCC2	1244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	101559080	101559080	+	Silent	SNP	G	G	A	rs181542662		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	ABCC2-91	NM_000392	exon8	c.G984A	p.L328L	CCTACTGAAGCTA	.	52	10	60	0	G|0.999;A|0.000	0	0	0	0	0
AP2A2	161	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	985477	985477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	AP2A2-90	NM_001242837	exon8	c.T860C	p.I287T	AGACCATCCTGAA	.	148	54	148	1	.	38	22	16	0	0
MUC2	4583	hgsc.bcm.edu;broad.mit.edu	37	11	1093292	1093292	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	MUC2-90	NM_002457	exon30	c.C5111T	p.T1704I	CCACCACCACTAC	.	107	7	97	0	.	0	0	0	0	0
MPEG1	219972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	58978564	58978564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	MPEG1-70	NM_001039396	exon1	c.G1775A	p.R592K	GGGAGCCTGGCAG	.	104	39	96	0	.	6	6	0	0	0
PYGM	5837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64517951	64517951	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	PYGM-92	NM_005609	exon17	c.A2074T	p.T692S	CCATGGTGCCAAT	.	114	38	156	0	.	0	0	0	0	0
COA4	51287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	73584202	73584202	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	.	NM_016565	exon2	c.G222T	p.E74D	CAGCTCCTCTTGC	.	77	9	85	0	.	107	80	27	0	0
PRCP	5547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	82560214	82560214	+	Silent	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	PRCP-91	NM_199418	exon7	c.A861G	p.P287P	AGTTAATGGGCTG	.	88	18	82	0	.	69	54	15	0	0
DDX10	1662	hgsc.bcm.edu	37	11	108559718	108559718	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	DDX10-1145	NM_004398	exon7	c.A904G	p.S302G	AAAATAAGTGTGC	.	79	4	112	0	.	9	9	0	0	0
SLC37A4	2542	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118895661	118895661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	SLC37A4-67	NM_001164278	exon12	c.A1315G	p.I439V	TGCGGATGTTTCG	.	125	41	180	0	.	147	72	75	0	0
NCAPD2	9918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6637492	6637492	+	Silent	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	NCAPD2-660	NM_014865	exon25	c.T3297C	p.A1099A	GTATGCTCGGTAA	.	134	31	146	0	.	0	0	0	0	0
LARP4	113251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	50847398	50847398	+	Silent	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	LARP4-91	NM_001170808	exon9	c.T960C	p.Y320Y	GGTCTATAGTATT	.	178	44	121	0	.	2	1	1	0	0
NPFF	8620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53900627	53900627	+	Missense_Mutation	SNP	C	C	T	rs199569723		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	NPFF-90	NM_003717	exon3	c.G275A	p.R92Q	CCAGCCCGGGGAC	.	76	10	58	0	.	7	7	0	0	0
CEP290	80184	broad.mit.edu;bcgsc.ca	37	12	88474150	88474150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	CEP290-96	NM_025114	exon38	c.G5035A	p.E1679K	TCACTTCATCTTC	.	56	24	52	1	.	2	2	0	0	0
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	88514780	88514780	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	CEP290-96	NM_025114	exon14	c.T1353G	p.Y451X	CGATTCATAATCT	.	18	10	12	0	.	0	0	0	0	0
ANKS1B	56899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	99640158	99640158	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	.	NM_152788	exon13	c.C2241T	p.S747S	CTCATTGGAAGGA	.	231	112	198	0	.	0	0	0	0	0
CCDC64	92558	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	120428098	120428098	+	Silent	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	CCDC64-92	NM_207311	exon1	c.C426T	p.L142L	CAAGCTCGAGGTG	.	269	64	208	1	.	0	0	0	0	0
GPC6	10082	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	94938687	94938687	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	GPC6-90	NM_005708	exon5	c.A962C	p.E321A	TTTCTGAAGCCAT	.	91	34	105	1	.	1	0	1	0	0
FAM161B	145483	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	74409353	74409353	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	FAM161B-91	NM_152445	exon4	c.T1180A	p.S394T	TAGGGGAAGAGGC	.	72	18	114	0	.	5	0	5	0	0
SYNE3	161176	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	95906070	95906070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	.	NM_152592	exon12	c.G2125A	p.A709T	CCTGCGCTTCCAC	.	137	7	181	0	.	0	0	0	0	0
RAB26	25837	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2201715	2201715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	RAB26-227	NM_014353	exon4	c.A368G	p.Q123R	CTGGTCAGGAGCG	.	347	93	280	1	.	0	0	0	0	0
TBC1D24	57465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2550436	2550436	+	Silent	SNP	G	G	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	TBC1D24-90	NM_001199107	exon7	c.G1470T	p.L490L	CAACCTGCCCTCC	.	269	58	314	0	.	2	0	2	0	0
CHD9	80205	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	53288491	53288491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	CHD9-272	NM_025134	exon18	c.A4003G	p.S1335G	AGCATGAGTGGAA	.	148	41	145	1	.	0	0	0	0	0
PKD1L3	342372	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72016037	72016037	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	PKD1L3-68	.	.	.	.	GGGCAGACAGTTG	.	169	40	142	0	.	0	0	0	0	0
SDR42E1	93517	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	82033252	82033252	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	SDR42E1-90	NM_145168	exon3	c.C646A	p.P216T	TCCTGGGGTCCCC	.	142	41	125	1	.	2	0	2	0	0
FBXW10	10517	bcgsc.ca	37	17	18653384	18653384	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	FBXW10-91	NM_001267585	exon4	c.G933T	p.M311I	CGCCATGGCTCAA	.	682	84	511	1	.	0	0	0	0	0
TCAP	8557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37821723	37821723	+	Splice_Site	SNP	G	G	A	rs113187448	alternate_allele	TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	TCAP-90	NM_003673	exon1	c.110+1G>A	.	GGAGGGGTGAGTG	.	134	32	87	0	.	2	0	2	0	0
KRT10	3858	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38978229	38978229	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	KRT10-90	NM_000421	exon1	c.C609T	p.I203I	GTCATCGATGGTT	.	186	113	144	1	.	0	0	0	0	0
EME1	146956	bcgsc.ca	37	17	48457701	48457701	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	EME1-227	NM_001166131	exon8	c.T1414C	p.F472L	TTCTCCTTCTGTC	.	170	99	126	3	.	1	0	1	0	0
RPTOR	57521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	78811724	78811724	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	RPTOR-847	NM_001163034	exon10	c.A1139C	p.Q380P	GCAGGCAAGCCTG	.	174	36	108	0	.	0	0	0	0	0
ACTG1	71	ucsc.edu	37	17	79478136	79478136	+	Splice_Site	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	ACTG1-91	NM_001199954	exon6	c.803-2A>G	.	CATACCTAGGGGA	.	395	2	343	0	.	9	9	0	0	0
IMPACT	55364	broad.mit.edu	37	18	22020564	22020564	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	IMPACT-90	NM_018439	exon6	c.A472G	p.I158V	TTTGATATCAGTG	.	100	3	151	0	.	3	3	0	0	0
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9048182	9048182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	MUC16-566	NM_024690	exon5	c.G33449A	p.G11150E	ACCATTCCTGGTA	.	118	32	140	1	.	0	0	0	0	0
PRKCSH	5589	hgsc.bcm.edu	37	19	11558370	11558370	+	Silent	SNP	G	G	A	rs77563879		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	PRKCSH-90	NM_001001329	exon11	c.G966A	p.E322E	GGAGGAGGAAGAA	.	115	6	203	0	.	15	15	0	0	0
GIPC1	10755	broad.mit.edu	37	19	14591257	14591257	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	GIPC1-226	NM_202468	exon5	c.T515A	p.I172N	ACGCTGATGAGGT	.	208	6	197	0	.	139	138	1	0	0
FAM71E1	112703	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50970983	50970983	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	FAM71E1-44	NM_138411	exon4	c.G595A	p.A199T	GTGGGGCCCGCAG	.	140	45	175	1	.	10	2	8	0	0
ZNF160	90338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53572249	53572249	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	ZNF160-90	NM_001102603	exon7	c.A1538G	p.E513G	CCACACTCATTAC	.	49	16	51	0	.	5	4	1	0	0
ZNF416	55659	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	58084873	58084873	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	ZNF416-90	NM_017879	exon4	c.T399A	p.C133X	GACCGCACATGCC	.	160	63	174	1	.	2	0	2	0	0
TRAPPC12	51112	ucsc.edu;bcgsc.ca	37	2	3392363	3392363	+	Silent	SNP	G	G	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	.	NM_016030	exon2	c.G969C	p.V323V	GGCCGTGGCCACC	.	199	97	226	2	.	17	5	12	0	0
ZC3H6	376940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	113089251	113089251	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	ZC3H6-93	NM_198581	exon12	c.G2756C	p.S919T	CAAAAAGTGATCT	.	74	26	74	0	.	0	0	0	0	0
FAP	2191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	163046173	163046173	+	Silent	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	FAP-93	NM_004460	exon18	c.T1542C	p.D514D	AATTTCATCTACT	.	84	50	72	0	.	0	0	0	0	0
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	216232592	216232592	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	FN1-584	NM_212482	exon42	c.T7012C	p.S2338P	TAGATGAATCACA	.	155	50	131	0	.	3	0	3	0	0
CHPF	79586	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	220406754	220406754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	CHPF-90	NM_024536	exon2	c.C472T	p.R158W	GGGCCCGGCGGCC	.	83	6	103	0	.	39	33	6	0	0
HJURP	55355	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234749356	234749356	+	Silent	SNP	G	G	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	HJURP-69	NM_018410	exon8	c.C2070G	p.G690G	TCCGGAGCCCTGG	.	113	57	85	1	.	0	0	0	0	0
TBC1D20	128637	broad.mit.edu	37	20	422661	422661	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	TBC1D20-90	NM_144628	exon4	c.C364A	p.L122I	CCTGGAGCCCTTC	.	69	5	83	1	.	4	4	0	0	0
SRXN1	140809	broad.mit.edu	37	20	633661	633661	+	Silent	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	SRXN1-91	NM_080725	exon1	c.T169C	p.L57L	GGTCCAACACGGA	.	93	3	144	0	.	8	8	0	0	0
TMEM230	29058	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	5086868	5086868	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	.	NM_001009923	exon4	c.G377A	p.G126D	AGGGAGCCTATAA	.	93	6	178	0	.	85	71	14	0	0
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	9440354	9440354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	PLCB4-274	NM_001172646	exon34	c.G3145A	p.E1049K	GAGCAAGAAATCC	.	71	23	72	0	.	11	7	4	0	0
APP	351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	27328004	27328004	+	Silent	SNP	G	G	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	APP-91	NM_000484	exon12	c.C1524G	p.T508T	CTTTAGGGTGTGC	.	168	43	202	0	.	697	305	392	0	0
BRWD1	54014	bcgsc.ca	37	21	40646393	40646393	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	BRWD1-94	NM_018963	exon13	c.T1151C	p.L384P	CCACTTAGGAACC	.	65	4	94	0	.	0	0	0	0	0
ARVCF	421	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	19967613	19967613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	ARVCF-91	NM_001670	exon6	c.G1049T	p.R350L	TCCTTGCGGGCGC	.	34	14	51	0	.	2	1	1	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885562	29885562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	NEFH-90	NM_021076	exon4	c.G1933A	p.E645K	AAGGAGGAAGCAA	.	192	25	305	0	.	0	0	0	0	0
CACNA1I	8911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	40055466	40055466	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	CACNA1I-135	NM_021096	exon13	c.A2359G	p.K787E	GGCTGCAAGTTCA	.	179	64	222	0	.	0	0	0	0	0
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46654194	46654194	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	PKDREJ-156	NM_006071	exon1	c.C5026T	p.Q1676X	CGATCTGGTCATG	.	66	27	68	0	.	0	0	0	0	0
TTC38	55020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46677589	46677589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	TTC38-91	NM_017931	exon7	c.A709G	p.M237V	GAATTCATGCAGC	.	88	31	116	0	.	13	8	5	0	0
FBXL2	25827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	33415410	33415410	+	Silent	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	FBXL2-289	NM_012157	exon9	c.C654T	p.C218C	GTCCTGCTCAGTA	.	139	64	132	0	.	0	0	0	0	0
CCDC66	285331	broad.mit.edu	37	3	56649978	56649978	+	Silent	SNP	A	A	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	CCDC66-135	NM_001141947	exon13	c.A1740C	p.A580A	TAATGCATCTAAC	.	46	7	31	0	.	3	1	2	0	0
QTRTD1	79691	broad.mit.edu	37	3	113795754	113795754	+	Silent	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	QTRTD1-91	NM_001256835	exon6	c.A747G	p.S249S	GCTGTCATCAGTC	.	226	4	190	1	.	3	3	0	0	0
PARP14	54625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	122437696	122437696	+	Silent	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	PARP14-525	NM_017554	exon14	c.A4698G	p.T1566T	AAAAACAGTTGAT	.	150	39	99	0	.	15	11	4	0	0
UBA5	79876	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	132379518	132379518	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	UBA5-226	NM_024818	exon1	c.A137T	p.E46V	GCTCAGAGGTGGT	.	359	171	264	2	.	17	7	10	0	0
STAG1	10274	broad.mit.edu	37	3	136183765	136183765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	STAG1-228	NM_005862	exon13	c.A1271G	p.H424R	GGGCGATGTGCCG	.	60	4	41	0	.	0	0	0	0	0
SMC4	10051	bcgsc.ca	37	3	160119803	160119803	+	Silent	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	SMC4-291	NM_005496	exon2	c.T240C	p.P80P	AGCTCCTCGGCTT	.	51	4	47	0	.	0	0	0	0	0
NDUFB5	4711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	179322636	179322636	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	NDUFB5-91	NM_002492	exon1	c.G33A	p.S11S	GGTTTCGGTTACT	.	107	34	125	0	.	20	1	19	0	0
KLHL6	89857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183226047	183226047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	KLHL6-93	NM_130446	exon3	c.G709A	p.E237K	CGGTCTCAAACAC	.	277	69	199	0	.	0	0	0	0	0
FAM184B	27146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	17710845	17710845	+	Silent	SNP	G	G	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	FAM184B-23	NM_015688	exon2	c.C564A	p.G188G	GCCCTGGCCTGGC	.	84	12	92	0	.	0	0	0	0	0
TMPRSS11F	389208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	68930403	68930403	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	TMPRSS11F-91	NM_207407	exon8	c.G1015T	p.G339X	GCTCACCATCATC	.	40	14	69	0	.	0	0	0	0	0
WWC2	80014	broad.mit.edu;bcgsc.ca	37	4	184129218	184129218	+	Silent	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	WWC2-93	NM_024949	exon3	c.C354T	p.Y118Y	ACTGTACCATGTG	.	154	6	136	0	.	0	0	0	0	0
CASP3	836	broad.mit.edu	37	4	185552222	185552222	+	Silent	SNP	G	G	T	rs200014759	alternate_allele	TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	CASP3-659	NM_004346	exon7	c.C573A	p.A191A	GAAGTCGGCCTCC	.	90	3	88	0	G|0.999;A|0.001	10	10	0	0	0
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1093744	1093744	+	Silent	SNP	C	C	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	SLC12A7-138	NM_006598	exon3	c.G246T	p.V82V	CGAGGACACCATG	.	163	47	235	0	.	4	2	2	0	0
LOX	4015	broad.mit.edu	37	5	121412648	121412648	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	LOX-650	NM_002317	exon2	c.A680G	p.Y227C	TGCACGTACGTGG	.	109	3	108	0	.	1	1	0	0	0
PROB1	389333	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	138727939	138727939	+	Silent	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	.	NM_001161546	exon1	c.T2832C	p.Y944Y	AGGCCCATAGGCG	.	124	27	193	0	.	0	0	0	0	0
RBM27	54439	broad.mit.edu;bcgsc.ca	37	5	145638017	145638017	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	RBM27-70	NM_018989	exon11	c.A1600G	p.N534D	GCTGCTAACATTG	.	66	4	90	0	.	0	0	0	0	0
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176562915	176562915	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	NSD1-188	NM_022455	exon2	c.T811G	p.L271V	GAGCAATTAAACT	.	91	31	105	0	.	0	0	0	0	0
KIF6	221458	broad.mit.edu	37	6	39607523	39607523	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	KIF6-713	NM_145027	exon4	c.G262A	p.G88S	TGTAACCTGCCAG	.	84	8	125	0	.	0	0	0	0	0
MRPS10	55173	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	42176601	42176601	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	MRPS10-90	NM_018141	exon6	c.A517T	p.T173S	CCTTTGTTACTTC	.	152	45	178	0	.	0	0	0	0	0
SLC29A1	2030	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	44197513	44197513	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	SLC29A1-154	NM_004955	exon4	c.C299A	p.S100Y	TCAACTCCTTCCT	.	89	30	75	1	.	17	12	5	0	0
EEF1A1	1915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	74227601	74227601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	EEF1A1-226	NM_001402	exon8	c.G1321A	p.V441M	TGTCCACTGCTTT	.	101	25	172	0	.	11366	6399	4966	1	0
RIPPLY2	134701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	84563845	84563845	+	Silent	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	RIPPLY2-90	NM_001009994	exon3	c.C204T	p.A68A	CGCAGCCTCAGGA	.	132	13	163	0	.	0	0	0	0	0
ACTB	60	broad.mit.edu	37	7	5568199	5568199	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	ACTB-226	NM_001101	exon4	c.C515G	p.P172R	GCATGGGGGAGGG	.	303	8	274	0	.	1925	1882	42	1	0
C7orf65	401335	broad.mit.edu;bcgsc.ca	37	7	47698325	47698325	+	Silent	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	.	NM_001123065	exon2	c.G105A	p.L35L	CAACTTGCCCAGG	.	98	6	89	0	.	0	0	0	0	0
GATAD1	57798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	92083893	92083893	+	Silent	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	GATAD1-514	NM_021167	exon4	c.A513G	p.R171R	AATCAGAGGTTTT	.	136	63	148	0	.	13	5	8	0	0
LRCH4	4034	broad.mit.edu;bcgsc.ca	37	7	100176068	100176068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	LRCH4-136	NM_002319	exon6	c.G802T	p.A268S	CCAGGGCCGACCC	.	461	35	408	1	.	16	16	0	0	0
DOCK5	80005	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	25224425	25224425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	DOCK5-71	NM_024940	exon31	c.A3163G	p.T1055A	TTTCTCACCCATG	.	53	5	87	0	.	0	0	0	0	0
WHSC1L1	54904	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	8	38175506	38175506	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	WHSC1L1-658	NM_017778	exon10	c.G1906A	p.V636I	CGGAGACGGAGCT	.	79	28	72	0	.	8	7	1	0	0
INTS8	55656	ucsc.edu	37	8	95884142	95884142	+	Silent	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	INTS8-90	NM_017864	exon21	c.A2445G	p.A815A	TGTGGCAATCACA	.	41	4	64	0	.	22	22	0	0	0
JAK2	3717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	5126752	5126752	+	Silent	SNP	T	T	C	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	JAK2-75307	NM_004972	exon25	c.T3360C	p.A1120A	TCTAGCTCTTCGA	.	58	45	76	0	.	2	1	1	0	0
IFT74	80173	ucsc.edu	37	9	27055739	27055739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	IFT74-515	NM_001099222	exon17	c.C1466T	p.A489V	TGCCAGCTTTAAA	.	91	1	139	0	.	25	23	2	0	0
DAPK1	1612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	90321821	90321821	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	DAPK1-359	NM_004938	exon26	c.T3835G	p.F1279V	GAAAGCTTCAGCA	.	108	79	132	0	.	21	3	18	0	0
SPTAN1	6709	broad.mit.edu	37	9	131370209	131370209	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	SPTAN1-158	NM_003127	exon33	c.G4225T	p.G1409X	GCTCACGGACACT	.	134	5	120	0	.	54	54	0	0	0
ABL1	25	ucsc.edu;bcgsc.ca	37	9	133738297	133738297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	ABL1-3810	NM_007313	exon4	c.G754A	p.D252N	AACTACGACAAGT	.	172	119	198	2	.	8	0	8	0	0
RAPGEF1	2889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	134505712	134505712	+	Splice_Site	SNP	C	C	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	RAPGEF1-849	NM_005312	exon7	c.601-1G>A	.	CAGCTCCTACCCC	.	97	9	87	0	.	0	0	0	0	0
WWC3	55841	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	10062249	10062249	+	Silent	SNP	A	A	T	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	WWC3-134	NM_015691	exon7	c.A585T	p.V195V	CCATGTAGGCGTG	.	80	8	92	0	.	3	3	0	0	0
HUWE1	10075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53584383	53584383	+	Silent	SNP	A	A	G	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	HUWE1-280	NM_031407	exon60	c.T8166C	p.T2722T	AGATGCAGTACAC	.	41	31	53	0	.	0	0	0	0	0
NUP210L	91181	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	154033038	154033049	+	In_Frame_Del	DEL	ATGTAAGTGATG	ATGTAAGTGATG	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	ATGTAAGTGATG	ATGTAAGTGATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	NUP210L-77	NM_001159484	exon20	c.2817_2828del	p.939_943del	.	.	64	14	99	0	.	0	0	0	0	0
RGSL1	353299	hgsc.bcm.edu;bcgsc.ca	37	1	182462175	182462194	+	Frame_Shift_Del	DEL	TTGAGGAGCTTTGCTACAAG	TTGAGGAGCTTTGCTACAAG	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	TTGAGGAGCTTTGCTACAAG	TTGAGGAGCTTTGCTACAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	RGSL1-226	NM_001137669	exon9	c.1736_1755del	p.579_585del	.	.	45	11	84	0	.	0	0	0	0	0
SYT2	127833	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	202566051	202566052	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	SYT2-93	NM_177402	exon9	c.1093_1094del	p.365_365del	.	.	122	32	134	0	.	0	0	0	0	0
OAT	4942	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	126100644	126100644	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	OAT-68	NM_000274	exon2	c.97delA	p.T33fs	.	.	96	27	99	0	.	0	0	0	0	0
NUMA1	4926	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	71733436	71733436	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	NUMA1-633	NM_006185	exon7	c.321delC	p.T107fs	.	.	68	21	85	0	.	0	0	0	0	0
GRWD1	83743	hgsc.bcm.edu	37	19	48953775	48953775	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	GRWD1-91	NM_031485	exon4	c.674delG	p.R225fs	.	.	54	12	51	0	.	0	0	0	0	0
DNMT3A	1788	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	25505312	25505312	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	DNMT3A-1924	NM_175630	exon4	c.446delC	p.A149fs	.	.	146	67	115	0	.	0	0	0	0	0
LRP2	4036	broad.mit.edu	37	2	170096143	170096143	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	LRP2-175	NM_004525	exon26	c.4188delT	p.I1396fs	GCCTAGAATATCA	.	213	15	197	0	.	0	0	0	0	0
MYH7B	57644	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	33567508	33567512	+	Frame_Shift_Del	DEL	TCGCT	TCGCT	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	TCGCT	TCGCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	MYH7B-136	NM_020884	exon7	c.369_373del	p.123_125del	.	.	76	29	81	0	.	0	0	0	0	0
DIP2A	23181	hgsc.bcm.edu;bcgsc.ca	37	21	47985760	47985761	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	DIP2A-24	NM_015151	exon36	c.4299_4300del	p.1433_1434del	.	.	117	27	139	0	.	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885581	29885604	+	In_Frame_Del	DEL	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	NEFH-90	NM_021076	exon4	c.1952_1975del	p.651_659del	.	.	231	40	410	0	.	0	0	0	0	0
FAT1	2195	bcgsc.ca	37	4	187628814	187628818	+	Frame_Shift_Del	DEL	CCAGT	CCAGT	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	CCAGT	CCAGT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	FAT1-34	NM_005245	exon2	c.2164_2168del	p.722_723del	TGAATACCAGTCG	.	77	6	119	0	.	0	0	0	0	0
IGF2R	3482	hgsc.bcm.edu;bcgsc.ca	37	6	160494272	160494272	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	IGF2R-118	NM_000876	exon34	c.4718delG	p.S1573fs	.	.	226	54	248	0	.	0	0	0	0	0
KIF13B	23303	broad.mit.edu;bcgsc.ca	37	8	28984648	28984650	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	KIF13B-22	NM_015254	exon25	c.3211_3213del	p.1071_1071del	GAAGGTCTCATGT	.	99	0	128	0	.	0	0	0	0	0
KIF13B	23303	broad.mit.edu;bcgsc.ca	37	8	28984652	28984654	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	KIF13B-22	NM_015254	exon25	c.3207_3209del	p.1069_1070del	GTCTCATGTGTTC	.	99	10	127	0	.	0	0	0	0	0
EFHD1	80303	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	233498655	233498656	+	Frame_Shift_Ins	INS	-	-	AC	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	EFHD1-90	NM_025202	exon1	c.241_242insAC	p.Y81fs	.	.	28	13	22	0	.	0	0	0	0	0
CNTN4	152330	broad.mit.edu	37	3	3080674	3080675	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	CNTN4-344	NM_175607	exon19	c.2150_2151insTA	p.V717fs	AACTGGTTATAAC	.	158	10	153	0	.	0	0	0	0	0
ZNF615	284370	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52496371	52496372	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-GL-A59T-01A-21D-A28G-10	TCGA-GL-A59T-10A-01D-A28G-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c895d83d-e672-4e7a-bcd6-d068d309c625	ac797190-ad63-4351-9d7b-129d999487c2	.	ZNF615-95	NM_198480	exon6	c.G1957A	p.A663I	TACATGCAAAGGA	.	134.0	41.0	144.0	0.0	.	0	0	0	0	0