Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 LRRC8B 23507 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 90048545 90048545 + Silent SNP A A G novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . LRRC8B-92 NM_015350 exon5 c.A336G p.K112K CGAGAAACAGCTC . 174 61 152 0 . 0 0 0 0 0 CTNNA3 29119 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 67726425 67726425 + Missense_Mutation SNP C C T novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . CTNNA3-234 NM_013266 exon17 c.G2345A p.C782Y TGACTGCAGATTT . 131 53 124 0 . 0 0 0 0 0 NUP98 4928 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 3744474 3744474 + Missense_Mutation SNP T T A novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . NUP98-703 NM_005387 exon16 c.A2110T p.S704C CACTGCTTCCTTC . 251 93 205 0 . 2 2 0 0 0 MTMR2 8898 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 95568462 95568462 + Missense_Mutation SNP C C T novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . MTMR2-91 NM_016156 exon15 c.G1924A p.V642I ATACAACAGTTTG . 158 56 124 1 . 37 17 20 0 0 EFCAB4B 84766 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 3765545 3765545 + Missense_Mutation SNP G G T novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . EFCAB4B-92 NM_001144958 exon9 c.C790A p.Q264K GCTCTTGACTGCG . 109 37 85 0 . 0 0 0 0 0 HECTD1 25831 broad.mit.edu 37 14 31604103 31604103 + Missense_Mutation SNP C C T novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . HECTD1-570 NM_015382 exon22 c.G3553A p.D1185N AGTCATCAACATG . 119 5 95 0 . 2 2 0 0 0 IL21R 50615 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 27445763 27445763 + Missense_Mutation SNP C C G novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . IL21R-660 NM_181079 exon4 c.C211G p.L71V CTCACCCTTACCT . 89 42 64 0 . 0 0 0 0 0 IL21R 50615 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 27459874 27459874 + Missense_Mutation SNP T T C novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . IL21R-660 NM_181079 exon10 c.T953C p.F318S CACCCTTCACTGG . 172 62 148 0 . 1 1 0 0 0 TRIM37 4591 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 57134407 57134407 + Missense_Mutation SNP T T C novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . TRIM37-660 NM_015294 exon13 c.A1028G p.Y343C ACACGATATTCAT . 36 21 46 0 . 0 0 0 0 0 HNRNPM 4670 ucsc.edu 37 19 8527467 8527467 + Splice_Site SNP T T G novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic WXS none Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . HNRNPM-68 NM_031203 exon3 c.336+2T>G . CAAGGGTAAGTGT . 118 2 117 0 . 1 1 0 0 0 ZNF536 9745 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 30936011 30936011 + Missense_Mutation SNP G G C novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . ZNF536-144 NM_014717 exon2 c.G1542C p.E514D TGCGGAGATGGAC . 44 21 31 0 . 0 0 0 0 0 CEACAM8 1088 broad.mit.edu 37 19 43098028 43098028 + Missense_Mutation SNP G G A novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . CEACAM8-91 NM_001816 exon2 c.C89T p.P30L GTGGGCGGGTTCC . 109 4 85 0 . 0 0 0 0 0 KCNN4 3783 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 44278354 44278354 + Missense_Mutation SNP C C T novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . KCNN4-92 NM_002250 exon3 c.G673A p.V225M CGGCCACGGACAG . 89 48 41 0 . 0 0 0 0 0 OTX1 5013 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 63282730 63282730 + Missense_Mutation SNP T T A novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . OTX1-70 NM_014562 exon5 c.T344A p.V115E CTCCAGTGCGGGA . 239 86 149 0 . 0 0 0 0 0 PNO1 56902 bcgsc.ca 37 2 68388842 68388842 + Missense_Mutation SNP G G T novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . PNO1-68 NM_020143 exon3 c.G385T p.A129S GTTAGTGCTCTGA . 52 4 63 0 . 13 13 0 0 0 KCNJ3 3760 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 155555531 155555531 + Missense_Mutation SNP T T C novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . KCNJ3-92 NM_001260509 exon1 c.T244C p.W82R TGGCGCTGGAACC . 467 30 352 0 . 1 1 0 0 0 TTN 7273 hgsc.bcm.edu;ucsc.edu;bcgsc.ca 37 2 179615958 179615958 + Silent SNP C C T rs145004106 TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . TTN-636 NM_133379 exon46 c.G11169A p.T3723T AGAAGACGTATCT . 121 36 133 0 C|1.000;T|0.000 0 0 0 0 0 SLC11A1 6556 broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 219249037 219249037 + Missense_Mutation SNP C C A novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . SLC11A1-93 NM_000578 exon3 c.C222A p.D74E CCTGGACCCAGGA . 103 32 123 1 . 2 2 0 0 0 BPIFB3 359710 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 31660577 31660577 + Missense_Mutation SNP A A G novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . . NM_182658 exon14 c.A1379G p.N460S TTTCCAATTCAGT . 163 62 191 0 . 0 0 0 0 0 FAM83C 128876 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 33874582 33874582 + Missense_Mutation SNP G G C novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . FAM83C-92 NM_178468 exon4 c.C2000G p.S667C TCCCCAGACCCAG . 236 101 173 0 . 0 0 0 0 0 TMPRSS3 64699 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 43802332 43802332 + Missense_Mutation SNP G G C novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . TMPRSS3-155 NM_001256317 exon9 c.C794G p.P265R GACTTGGGGAGGT . 70 27 67 0 . 0 0 0 0 0 MMP11 4320 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 24125618 24125618 + Missense_Mutation SNP G G T novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . MMP11-291 NM_005940 exon8 c.G1354T p.G452C CTGCGCGGCCGCC . 166 21 116 0 . 52 44 8 0 0 NEFH 4744 hgsc.bcm.edu 37 22 29885562 29885562 + Missense_Mutation SNP G G A novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . NEFH-90 NM_021076 exon4 c.G1933A p.E645K AAGGAGGAAGCAA . 115 18 92 0 . 0 0 0 0 0 CRBN 51185 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 3209472 3209472 + Missense_Mutation SNP T T G novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . CRBN-91 NM_016302 exon5 c.A533C p.Q178P GCTTGCTGGATTC . 52 19 50 0 . 0 0 0 0 0 ACVR2B 93 broad.mit.edu 37 3 38519723 38519723 + Silent SNP G G A novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . ACVR2B-942 NM_001106 exon4 c.G462A p.L154L CGTCCTGCTGGCC . 142 4 106 0 . 1 1 0 0 0 KLHDC8B 200942 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 49212303 49212303 + Missense_Mutation SNP G G A novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . KLHDC8B-90 NM_173546 exon4 c.G670A p.V224I GGCAGCGTCTTTA . 58 31 63 0 . 17 9 8 0 0 CHRD 8646 bcgsc.ca 37 3 184106751 184106751 + Missense_Mutation SNP G G A rs200027250 TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . CHRD-93 NM_003741 exon22 c.G2780A p.R927Q AGAGTCGATGCTG . 86 4 80 0 G|0.999;A|0.000 25 25 0 0 0 MAML3 55534 hgsc.bcm.edu 37 4 140811102 140811102 + Silent SNP C C T novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . MAML3-455 NM_018717 exon2 c.G1488A p.Q496Q CTGCTGCTGCTGC . 92 12 77 0 . 3314 3216 94 0 4 MAML3 55534 hgsc.bcm.edu 37 4 140811104 140811104 + Missense_Mutation SNP G G T novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . MAML3-455 NM_018717 exon2 c.C1486A p.Q496K GCTGCTGCTGCTG . 93 10 79 0 . 2741 2727 2 10 2 SLC6A19 340024 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 1219218 1219218 + Silent SNP C C T novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . SLC6A19-90 NM_001003841 exon9 c.C1374T p.L458L GGTGCTCACAGGT . 106 41 79 0 . 0 0 0 0 0 LYRM4 57128 hgsc.bcm.edu 37 6 5260906 5260906 + Nonsense_Mutation SNP T T A novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . LYRM4-90 NM_020408 exon1 c.A61T p.K21X AACGCTTGCTCTC . 13 9 6 0 . 27 12 15 0 0 ABCF1 23 broad.mit.edu 37 6 30550906 30550906 + Missense_Mutation SNP G G A novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . ABCF1-92 NM_001025091 exon10 c.G856A p.V286M TTCTCCGTGTCCC . 125 3 140 0 . 22 22 0 0 0 TNRC18 84629 broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 5396874 5396874 + Nonsense_Mutation SNP G G A novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . TNRC18-46 NM_001080495 exon16 c.C4867T p.Q1623X GCTCCTGGTCGCT . 112 48 89 1 . 15 9 6 0 0 C7orf31 136895 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 25182389 25182389 + Missense_Mutation SNP T T G novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . C7orf31-90 NM_138811 exon8 c.A729C p.K243N AGGAGGTTTTGGG . 89 38 81 0 . 1 0 1 0 0 NOM1 64434 hgsc.bcm.edu 37 7 156742605 156742605 + Silent SNP A A G rs149616380 TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . NOM1-90 NM_138400 exon1 c.A174G p.E58E TTCGGAAGGCGAG . 4 4 0 0 A|0.993;G|0.007 2 2 0 0 0 FAM214B 80256 ucsc.edu;bcgsc.ca 37 9 35106598 35106598 + Missense_Mutation SNP G G T novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic WXS none Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . . NM_025182 exon5 c.C996A p.S332R GGGGGGGCTCAGC . 37 4 45 0 . 9 9 0 0 0 C9orf153 389766 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 9 88844472 88844472 + Missense_Mutation SNP G G A novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . C9orf153-90 NM_001276368 exon3 c.C47T p.A16V AGGGTGGCTTCTC . 103 37 105 0 . 0 0 0 0 0 VCX 26609 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 X 7811790 7811790 + Silent SNP C C T rs200229312 TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . VCX-22 NM_013452 exon3 c.C354T p.S118S GGAGAGCGAGGTG . 308 103 269 0 . 3 3 0 0 0 GAB3 139716 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 X 153908429 153908429 + Missense_Mutation SNP A A G novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . GAB3-227 NM_001081573 exon9 c.T1627C p.S543P CTGGTGATGCTGA . 149 57 145 0 . 0 0 0 0 0 MYPOP 339344 broad.mit.edu 37 19 46393972 46393972 + Frame_Shift_Del DEL G G - novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . MYPOP-90 NM_001012643 exon3 c.1109delC p.P370fs GGGGCTGGGGGGG . 7 2 8 0 . 0 0 0 0 0 NEFH 4744 hgsc.bcm.edu 37 22 29885581 29885604 + In_Frame_Del DEL AGGCCAAGTCCCCAGAGAAGGAAG AGGCCAAGTCCCCAGAGAAGGAAG - novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 AGGCCAAGTCCCCAGAGAAGGAAG AGGCCAAGTCCCCAGAGAAGGAAG . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . NEFH-90 NM_021076 exon4 c.1952_1975del p.651_659del . . 147 57 141 0 . 0 0 0 0 0 EPHA6 285220 broad.mit.edu 37 3 96533514 96533514 + Frame_Shift_Del DEL A A - novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . EPHA6-1561 NM_001080448 exon1 c.47delA p.Q16fs CGCCGCAGGCAGC . 6 3 8 0 . 0 0 0 0 0 GPR133 283383 hgsc.bcm.edu 37 12 131476916 131476917 + Frame_Shift_Ins INS - - AC novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . GPR133-191 NM_198827 exon8 c.945_946insAC p.Q315fs . . 91 28 70 0 . 0 0 0 0 0 SUPT20HL1 100130302 hgsc.bcm.edu 37 X 24382384 24382385 + Missense_Mutation DNP GC GC AT novel TCGA-IA-A40X-01A-11D-A25F-10 TCGA-IA-A40X-10A-01D-A25F-10 GC GC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq e1217ebe-1826-41a9-b6c4-702100a66f5e 611a2445-8df1-4abd-bb6b-4954ee1dc47d . . NM_001136234 exon1 c.C1508T . CTGCTGCTGCTGC . 324.0 25.0 244.0 0.0 . 0 0 0 0 0