Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
RSC1A1	6248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	15987648	15987648	+	Silent	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	RSC1A1-91	NM_006511	exon1	c.T1285C	p.L429L	GAAAAATTAACAG	.	74	34	87	1	.	3	1	2	0	0
PGM1	5236	hgsc.bcm.edu;broad.mit.edu	37	1	64117371	64117371	+	Missense_Mutation	SNP	G	G	A	rs201303497		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	PGM1-228	NM_001172818	exon9	c.G1366A	p.A456T	GAGGGCGCAAACA	.	42	3	60	0	G|0.999;A|0.000	139	139	0	0	0
AMY1A	276	hgsc.bcm.edu	37	1	104203011	104203011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	.	NM_001008221	exon7	c.C908T	p.P303L	TCATGCCTTCTGA	.	547	106	667	1	.	0	0	0	0	0
CELSR2	1952	hgsc.bcm.edu	37	1	109792762	109792762	+	Silent	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	CELSR2-526	NM_001408	exon1	c.T61C	p.L21L	CTGCTGTTGCTGC	.	37	2	49	0	.	12	0	12	0	0
CAPZA1	829	hgsc.bcm.edu	37	1	113202331	113202331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	CAPZA1-514	NM_006135	exon7	c.G515A	p.R172H	ATGGTCGTTGGAG	.	37	3	70	0	.	0	0	0	0	0
KIAA1614	57710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	180885553	180885553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	KIAA1614-26	NM_020950	exon2	c.C314T	p.S105F	CCTGCTCTGCTTC	.	108	44	162	0	.	3	1	2	0	0
TRMT1L	81627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	185094118	185094118	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	TRMT1L-92	NM_030934	exon12	c.A1717T	p.S573C	ACTGACTTTGAGG	.	112	42	125	0	.	17	12	5	0	0
ADCK3	56997	hgsc.bcm.edu	37	1	227169815	227169815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	ADCK3-361	NM_020247	exon6	c.C818T	p.A273V	GTGGTGCGGCACT	.	25	2	35	0	.	26	26	0	0	0
OBSCN	84033	hgsc.bcm.edu	37	1	228539078	228539078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	OBSCN-403	NM_001271223	exon89	c.A21347G	p.E7116G	TGAGTGAGCCTCG	.	9	2	8	0	.	0	0	0	0	0
GCSAML	148823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247737622	247737622	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	.	NM_145278	exon5	c.T346C	p.S116P	AGGACTTCTGTTA	.	89	36	107	0	.	0	0	0	0	0
GTPBP4	23560	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	1061760	1061760	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	GTPBP4-92	NM_012341	exon16	c.C1676A	p.A559D	ACTCTGCTCCCCC	.	166	55	198	0	.	13	6	7	0	0
KLF6	1316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	3822362	3822362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	KLF6-1134	NM_001300	exon3	c.G736A	p.E246K	TTAACTCATCACT	.	77	23	135	0	.	90	43	47	0	0
KIN	22944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	7829859	7829859	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	KIN-230	NM_012311	exon1	c.C38G	p.A13G	CTGTTGGCGATAG	.	145	67	203	0	.	1	1	0	0	0
MGEA5	10724	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	103563517	103563517	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MGEA5-93	NM_001142434	exon7	c.T1011C	p.N337N	CACTCCATTCATG	.	116	9	148	0	.	9	9	0	0	0
NPS	594857	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	129347639	129347639	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	NPS-22	NM_001030013	exon1	c.A7G	p.S3G	ATGATTAGGTAAA	.	37	4	48	0	.	0	0	0	0	0
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6662595	6662595	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	DCHS1-73	NM_003737	exon2	c.G250C	p.E84Q	TGCCCTCTTGGGC	.	49	20	55	0	.	4	2	2	0	0
OR5F1	338674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55761615	55761615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	OR5F1-70	NM_003697	exon1	c.G487A	p.V163I	TGCTGACATGGCT	.	108	48	96	0	.	0	0	0	0	0
OR5F1	338674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55761636	55761636	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	OR5F1-70	NM_003697	exon1	c.T466G	p.F156V	CCATGAAGTTCAG	.	95	31	88	0	.	0	0	0	0	0
B3GNT6	192134	hgsc.bcm.edu	37	11	76751585	76751585	+	Splice_Site	SNP	T	T	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	.	NM_138706	exon3	c.988+1T>G	.	GCATCCTGGCCCT	.	5	4	1	0	.	0	0	0	0	0
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	76903188	76903188	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MYO7A-138	NM_000260	exon31	c.C4017T	p.N1339N	GCGCAACGCCCCC	.	77	35	106	0	.	0	0	0	0	0
PRDM10	56980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	129817185	129817185	+	Silent	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	PRDM10-91	NM_020228	exon5	c.C375T	p.T125T	TAGAGGGGTCTGC	.	79	28	93	1	.	2	2	0	0	0
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57573720	57573720	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	LRP1-596	NM_002332	exon30	c.G5122A	p.V1708I	GGCCTTGTCGTCC	.	127	54	200	0	.	17	9	8	0	0
HECTD4	283450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	112668608	112668608	+	Silent	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	.	NM_001109662	exon40	c.C5817T	p.P1939P	GATGAAGGGACGC	.	15	5	23	0	.	4	1	3	0	0
ZMYM5	9205	hgsc.bcm.edu	37	13	20398977	20398977	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	ZMYM5-90	NM_001142684	exon8	c.T1650C	p.F550F	TTTTGGAAAGTTA	.	14	2	13	0	.	5	5	0	0	0
MTMR6	9107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	25823587	25823587	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MTMR6-94	NM_004685	exon14	c.C1649G	p.T550S	TCCTTGGTGAGGA	.	58	24	79	0	.	14	6	8	0	0
PROSER1	80209	hgsc.bcm.edu	37	13	39588610	39588610	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	.	NM_025138	exon11	c.T779G	p.F260C	GTGGAAAATGCTA	.	37	2	38	0	.	0	0	0	0	0
IPO5	3843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	98652854	98652854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	IPO5-228	NM_002271	exon13	c.G1117A	p.V373I	AAGCTCGTTCTGC	.	67	33	88	0	.	20	11	9	0	0
FARP1	10160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99037979	99037979	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	FARP1-290	NM_005766	exon8	c.A670C	p.M224L	CTAGAGATGTATG	.	110	39	183	0	.	68	34	34	0	0
MYO16	23026	hgsc.bcm.edu	37	13	109793009	109793009	+	Silent	SNP	C	C	T	rs141423536		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MYO16-142	NM_001198950	exon32	c.C4449T	p.H1483H	GCTCCACCGCGCG	.	3	3	1	1	C|0.974;T|0.026	0	0	0	0	0
EXOC3L4	91828	hgsc.bcm.edu	37	14	103569068	103569068	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	EXOC3L4-23	NM_001077594	exon2	c.G1008C	p.Q336H	CGAGCAGCTCTAT	.	4	2	2	0	.	0	0	0	0	0
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	33961646	33961646	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	RYR3-520	NM_001243996	exon37	c.T5711C	p.L1904P	ACCTTCTCCTTCA	.	53	21	82	0	.	0	0	0	0	0
ACTC1	70	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	35085735	35085735	+	Silent	SNP	G	G	A	rs149432225		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	ACTC1-92	NM_005159	exon3	c.C165T	p.Y55Y	ACCTACGTAGGAG	.	74	34	94	1	G|1.000;A|0.000	0	0	0	0	0
THBS1	7057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	39885784	39885784	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	THBS1-653	NM_003246	exon19	c.T3182C	p.L1061P	CGGGCCTTTCTGT	.	179	67	257	0	.	11	9	2	0	0
CGNL1	84952	hgsc.bcm.edu	37	15	57808995	57808995	+	Silent	SNP	G	G	T	rs76645518	alternate_allele	TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	CGNL1-100	NM_001252335	exon10	c.G2421T	p.A807A	CTTGGCGAGCAGG	.	32	3	70	0	G|0.999;A|0.001	1	1	0	0	0
HMG20A	10363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	77759508	77759508	+	Silent	SNP	C	C	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	HMG20A-228	NM_018200	exon5	c.C309A	p.P103P	TGCACCCAAATCC	.	75	28	116	0	.	20	11	9	0	0
TICRR	90381	broad.mit.edu	37	15	90118913	90118913	+	Silent	SNP	C	C	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	.	NM_152259	exon1	c.C96A	p.T32T	CCTCACCTATCTG	.	13	4	17	0	.	0	0	0	0	0
MLST8	64223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2258565	2258565	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MLST8-392	NM_001199174	exon8	c.C813T	p.G271G	CCGCGGCTGGATG	.	198	45	276	0	.	158	104	54	0	0
PPP4C	5531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30094761	30094761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	PPP4C-226	NM_002720	exon6	c.G350A	p.S117N	ATGAGAGTCGCCA	.	165	102	156	0	.	65	25	40	0	0
MARVELD3	91862	broad.mit.edu;bcgsc.ca	37	16	71663293	71663293	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MARVELD3-91	NM_001017967	exon2	c.T491A	p.L164Q	GATATCTGCCCTC	.	118	5	116	0	.	9	9	0	0	0
ABR	29	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	916353	916353	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	ABR-91	NM_021962	exon17	c.A1843G	p.M615V	CGTTCATCTCAAT	.	129	39	129	0	.	1	1	0	0	0
CTNS	1497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	3550808	3550808	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	CTNS-90	NM_001031681	exon4	c.C132T	p.L44L	CAGCCTCACCCTG	.	94	13	68	0	.	0	0	0	0	0
GPR179	440435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	36486249	36486249	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	GPR179-93	NM_001004334	exon11	c.T3203G	p.I1068S	GGGAAGATCTTGG	.	113	28	112	0	.	0	0	0	0	0
IFNL1	282618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39787490	39787490	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	.	NM_172140	exon2	c.T217G	p.F73V	CCTGTCTTCCCCG	.	55	23	106	0	.	0	0	0	0	0
PRR19	284338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42814766	42814766	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	PRR19-68	NM_199285	exon3	c.C945T	p.P315P	ATCACCCCTGTTG	.	218	83	300	0	.	0	0	0	0	0
RSPH6A	81492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46317875	46317875	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	RSPH6A-91	NM_030785	exon1	c.C560G	p.A187G	ACCTGGGCACTGT	.	67	24	108	0	.	0	0	0	0	0
MYPOP	339344	hgsc.bcm.edu	37	19	46394100	46394100	+	Silent	SNP	C	C	T	rs142323830		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MYPOP-90	NM_001012643	exon3	c.G981A	p.P327P	GGGGGCCGGTGGG	.	7	6	2	0	C|0.989;T|0.011	3	2	1	0	0
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57325186	57325186	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	PEG3-164	NM_001146184	exon9	c.T4624C	p.C1542R	CTGAGCACTCCCC	.	114	35	186	0	.	0	0	0	0	0
ASAP2	8853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	9528579	9528579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	ASAP2-90	NM_001135191	exon22	c.T2287C	p.Y763H	GAGACTTACGGAG	.	49	22	92	0	.	0	0	0	0	0
SLC4A1AP	22950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27888159	27888159	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	SLC4A1AP-90	NM_018158	exon2	c.A1018G	p.M340V	TGGGGAATGGGTA	.	120	56	147	0	.	0	0	0	0	0
GPR75	10936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	54080607	54080607	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	GPR75-92	NM_006794	exon2	c.T1287C	p.S429S	GTAGGCAGAGTTT	.	190	49	303	0	.	0	0	0	0	0
USP39	10713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	85875075	85875075	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	USP39-658	NM_001256725	exon12	c.T1586G	p.L529X	ATGAATTACAAGA	.	102	44	100	0	.	19	18	1	0	0
MBD5	55777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	149248040	149248040	+	Silent	SNP	A	A	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MBD5-95	NM_018328	exon12	c.A4140C	p.P1380P	TAGACCAAGGACG	.	109	51	150	0	.	7	2	5	0	0
PAX3	5077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	223066673	223066673	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	PAX3-1821	NM_181457	exon8	c.G1410A	p.Q470Q	TCCATACTGCCCA	.	82	8	123	0	.	0	0	0	0	0
DOCK10	55619	hgsc.bcm.edu	37	2	225630473	225630473	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	DOCK10-92	NM_014689	exon56	c.C6526G	p.P2176A	CCGTGGGTAGGGC	.	35	2	58	0	.	2	2	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29625885	29625885	+	RNA	SNP	A	A	T	rs35805244		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	FRG1B-22	.	.	.	.	CCTGAAATCTGGC	.	190	11	187	1	.	7	1	0	0	6
SAMHD1	25939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	35532631	35532631	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	SAMHD1-90	NM_015474	exon13	c.A1432G	p.K478E	CCTCTTTTGGAAG	.	210	124	209	0	.	7	6	1	0	0
FITM2	128486	hgsc.bcm.edu	37	20	42939740	42939740	+	Missense_Mutation	SNP	G	G	A	rs144244368		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	FITM2-24	NM_001080472	exon1	c.C49T	p.R17W	CCGCCCGCACCAG	.	39	2	40	0	G|1.000;A|0.000	0	0	0	0	0
SCAF4	57466	hgsc.bcm.edu	37	21	33057763	33057763	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	SCAF4-90	NM_020706	exon18	c.T2244C	p.T748T	TGGTGGAGTTATA	.	96	5	139	0	.	10	10	0	0	0
CACNA1I	8911	hgsc.bcm.edu	37	22	40080409	40080409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	CACNA1I-135	NM_021096	exon36	c.A5933G	p.K1978R	CAGAAAAGGGCAC	.	36	2	47	0	.	0	0	0	0	0
MYD88	4615	hgsc.bcm.edu	37	3	38180515	38180515	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MYD88-901	NM_002468	exon1	c.C363T	p.S121S	ACCCAGCATTGGT	.	39	2	70	0	.	0	0	0	0	0
CELSR3	1951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48690562	48690562	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	CELSR3-523	NM_001407	exon10	c.T5507G	p.L1836R	AGAAGGAGATGGG	.	65	28	153	0	.	0	0	0	0	0
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	130292932	130292932	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	COL6A6-76	NM_001102608	exon7	c.T3110A	p.V1037E	ACAGAGTGCGAAT	.	41	20	65	0	.	0	0	0	0	0
LRPAP1	4043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	3519768	3519768	+	Silent	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	LRPAP1-92	NM_002337	exon5	c.T744C	p.T248T	AGCCTCAGTGCTG	.	41	13	66	0	.	0	0	0	0	0
TBC1D19	55296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	26737100	26737100	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	TBC1D19-153	NM_018317	exon16	c.T1108A	p.S370T	GGATTTTCAATGT	.	22	7	15	0	.	0	0	0	0	0
AFF1	4299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	88029381	88029381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	AFF1-289	NM_001166693	exon11	c.G1447T	p.D483Y	ACCAGTGACTCAG	.	64	24	94	0	.	7	4	3	0	0
SEC24B	10427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	110415933	110415933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	SEC24B-137	NM_006323	exon6	c.A1409G	p.Y470C	CTGGTTATCAGAA	.	144	59	188	0	.	5	2	3	0	0
SPATA5	166378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	123848831	123848831	+	Missense_Mutation	SNP	A	A	G	rs201699296		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	SPATA5-90	NM_145207	exon2	c.A206G	p.H69R	TTATTCATCTTGG	.	116	53	119	0	A|0.999;G|0.000	0	0	0	0	0
MAML3	55534	hgsc.bcm.edu	37	4	140811108	140811108	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MAML3-455	NM_018717	exon2	c.G1482A	p.Q494Q	CTGCTGCTGCTGC	.	63	4	71	1	.	488	488	0	0	0
TRIM2	23321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	154215496	154215496	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	TRIM2-650	NM_015271	exon5	c.A645T	p.E215D	CTCTGAAATCATT	.	83	33	113	0	.	15	8	7	0	0
DCHS2	54798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	155225827	155225827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	DCHS2-94	NM_017639	exon17	c.A4234G	p.I1412V	CAATTATGTGATA	.	48	23	55	0	.	0	0	0	0	0
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187539116	187539116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	FAT1-34	NM_005245	exon10	c.T8624C	p.L2875P	TGGTCAAGTTCCT	.	67	26	100	0	.	36	20	16	0	0
SLC6A19	340024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1219640	1219640	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	SLC6A19-90	NM_001003841	exon10	c.T1399C	p.F467L	GGGACATTCCTCA	.	51	20	81	0	.	0	0	0	0	0
TRIO	7204	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	14497016	14497016	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	TRIO-562	NM_007118	exon50	c.C7909A	p.R2637S	GCACTCCGTTTAA	.	80	35	100	0	.	9	4	5	0	0
POLK	51426	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	74892358	74892358	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	POLK-229	NM_016218	exon13	c.G1840C	p.E614Q	ATATCAGAGAATT	.	171	76	215	0	.	7	4	3	0	0
BHMT	635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	78426847	78426847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	BHMT-91	NM_001713	exon8	c.A1129G	p.K377E	GTGACCAAAGGAA	.	164	53	247	1	.	2	0	2	0	0
MSH3	4437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	80040402	80040402	+	Silent	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MSH3-661	NM_002439	exon12	c.G1731A	p.K577K	GTTAAAGAAGTGG	.	52	20	53	0	.	0	0	0	0	0
SOX30	11063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	157075894	157075894	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	SOX30-91	NM_178424	exon2	c.T978A	p.D326E	GGGAGTATCTGGT	.	106	41	126	0	.	0	0	0	0	0
NHP2	55651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	177580732	177580732	+	Silent	SNP	G	G	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	NHP2-90	NM_017838	exon1	c.C87A	p.V29V	CTGGTTGACCAGC	.	39	20	70	1	.	128	70	58	0	0
MAML1	9794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	179193185	179193185	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MAML1-848	NM_014757	exon2	c.G1174T	p.E392X	GCCTCAGAGCTGT	.	104	28	153	0	.	0	0	0	0	0
TBC1D9B	23061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	179320371	179320371	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	TBC1D9B-154	NM_198868	exon5	c.A674T	p.E225V	AAGAGCTCCTGGT	.	69	24	106	0	.	40	20	20	0	0
TBC1D7	51256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	13307966	13307966	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	TBC1D7-91	NM_001143965	exon6	c.T531G	p.F177L	TTGTTCAAACGCT	.	85	26	116	0	.	0	0	0	0	0
AHI1	54806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	135644423	135644423	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	AHI1-227	NM_017651	exon24	c.G3205T	p.E1069X	TTAGTTCATCTGA	.	27	13	45	0	.	2	2	0	0	0
REPS1	85021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	139251190	139251190	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	REPS1-522	NM_001128617	exon9	c.C1181G	p.A394G	GCTTCAGCAGGAG	.	107	49	120	0	.	20	9	11	0	0
UST	10090	hgsc.bcm.edu	37	6	149068615	149068615	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	UST-92	NM_005715	exon1	c.C49T	p.H17Y	TGGCCCCATGGGG	.	7	5	7	2	.	1	0	1	0	0
HOXA3	3200	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	27147884	27147884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	HOXA3-153	NM_030661	exon3	c.C982T	p.R328C	TGTAGCGCTTCTG	.	19	5	26	0	.	5	2	3	0	0
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48411809	48411809	+	Silent	SNP	C	C	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	ABCA13-521	NM_152701	exon33	c.C10848A	p.A3616A	CCTGGCCTGGTTC	.	84	32	98	0	.	0	0	0	0	0
TMEM139	135932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142983611	142983611	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	TMEM139-90	NM_001242773	exon4	c.T340C	p.Y114H	CCCCCCTACAGCA	.	148	46	207	0	.	73	34	39	0	0
CA8	767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	61192348	61192348	+	Silent	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	CA8-90	NM_004056	exon2	c.G192A	p.S64S	CAACAGCGAGGGG	.	103	66	104	0	.	0	0	0	0	0
ZC3H3	23144	hgsc.bcm.edu	37	8	144550696	144550696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	ZC3H3-91	NM_015117	exon7	c.G1961A	p.R654H	AGGCTGCGCTGCA	.	28	2	17	0	.	15	15	0	0	0
MAPK15	225689	hgsc.bcm.edu	37	8	144802400	144802400	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	MAPK15-1378	NM_139021	exon8	c.A722G	p.D241G	CCCCAGACCTCCT	.	24	2	12	0	.	0	0	0	0	0
FBXO10	26267	hgsc.bcm.edu	37	9	37537315	37537315	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	FBXO10-637	NM_012166	exon3	c.G1211T	p.C404F	ACTAGGCAGCTGG	.	26	2	26	0	.	0	0	0	0	0
CBWD5	220869	hgsc.bcm.edu	37	9	70490003	70490003	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	CBWD5-22	NM_001024916	exon1	c.G66T	p.L22F	GGGAACCAATTCA	.	380	46	528	0	.	33	32	1	0	0
TMEM245	23731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	111853340	111853340	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	.	NM_032012	exon5	c.C1012T	p.R338X	GCCTTCGTCTGCC	.	85	15	97	0	.	25	25	0	0	0
C9orf171	389799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	135447853	135447853	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	C9orf171-157	NM_207417	exon7	c.G919A	p.V307M	TGTGCCGTGCGCC	.	62	32	84	0	.	0	0	0	0	0
SNAPC4	6621	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	139273027	139273027	+	Silent	SNP	C	C	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	SNAPC4-90	NM_003086	exon21	c.G3252C	p.G1084G	GAGAAGCCCCTGG	.	16	4	23	0	.	2	1	1	0	0
CHDC2	286464	hgsc.bcm.edu	37	X	36103603	36103603	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	.	NM_173695	exon5	c.A589G	p.K197E	CATGAAAAAAGGG	.	39	2	55	0	.	0	0	0	0	0
ZFY	7544	broad.mit.edu	37	Y	2843189	2843189	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	.	NM_003411	exon4	c.G688C	p.A230P	ATCGATGCAGAAT	.	11	2	51	0	.	0	0	0	0	0
NCDN	23154	hgsc.bcm.edu	37	1	36026434	36026444	+	Frame_Shift_Del	DEL	GATTTCCAGAA	GATTTCCAGAA	-	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	GATTTCCAGAA	GATTTCCAGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	NCDN-155	NM_014284	exon3	c.682_692del	p.228_231del	.	.	60	20	128	0	.	0	0	0	0	0
OR2M2	391194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	248344277	248344277	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	OR2M2-72	NM_001004688	exon1	c.990delA	p.I330fs	.	.	166	49	201	0	.	0	0	0	0	0
ITFG1	81533	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	47189669	47189669	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	ITFG1-91	NM_030790	exon18	c.1800delA	p.K600fs	.	.	239	77	175	0	.	0	0	0	0	0
FOXK2	3607	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	80543893	80543893	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	FOXK2-226	NM_004514	exon7	c.1393delC	p.P465fs	.	.	70	22	86	0	.	0	0	0	0	0
ZNF814	730051	broad.mit.edu	37	19	58384658	58384660	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	CTT	CTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	.	NM_001144989	exon3	c.2098_2100del	p.700_700del	GTGAGACTTCTTC	.	17	7	12	0	.	0	0	0	0	0
ASTE1	28990	hgsc.bcm.edu	37	3	130743293	130743300	+	Frame_Shift_Del	DEL	TTCTCGAT	TTCTCGAT	-	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	TTCTCGAT	TTCTCGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	ASTE1-90	NM_014065	exon3	c.851_858del	p.284_286del	.	.	66	20	168	0	.	0	0	0	0	0
ZNF292	23036	broad.mit.edu	37	6	87928395	87928395	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	ZNF292-72	NM_015021	exon4	c.484delA	p.K162fs	GTGTGGAAAAACC	.	14	7	24	0	.	0	0	0	0	0
AIM1	202	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	106968989	106968991	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	TCT	TCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	AIM1-139	NM_001624	exon2	c.2682_2684del	p.894_895del	.	.	148	55	196	0	.	0	0	0	0	0
DMXL1	1657	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	118500212	118500213	+	Frame_Shift_Ins	INS	-	-	AGTCATTT	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	DMXL1-92	NM_005509	exon20	c.4713_4714insAGTCATTT	p.T1571fs	.	.	62	20	107	0	.	0	0	0	0	0
GPT	2875	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	145732311	145732312	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-IZ-8195-01A-31D-2396-08	TCGA-IZ-8195-10A-01D-2396-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	fcdb724c-08ad-42b7-9fef-e4d84edaf2fe	5d320b5a-a67a-4a11-908d-9c5e8c70e16a	.	GPT-91	NM_005309	exon11	c.1419_1420insA	p.P473fs	.	.	109	36	109	0	.	0	0	0	0	0