Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq Trna_tot Trna_ref Trna_var Trna_alt1 Trna_alt2 DDI2 84301 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 15956839 15956839 + Silent SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . DDI2-44 NM_032341 exon3 c.C288T p.F96F AGATTTCAGTAGT . 133 66 168 0 . 2 0 2 0 0 PLA2G5 5322 hgsc.bcm.edu 37 1 20416294 20416294 + Silent SNP G G A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . PLA2G5-515 NM_000929 exon4 c.G198A p.A66A TTGGGCGCATGAC . 59 3 89 0 . 0 0 0 0 0 MSH4 4438 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 76269502 76269502 + Missense_Mutation SNP G G A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . MSH4-660 NM_002440 exon2 c.G331A p.D111N GCACGAGATACTA . 110 52 60 0 . 0 0 0 0 0 LRRC8C 84230 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 90180228 90180228 + Missense_Mutation SNP C C A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . LRRC8C-97 NM_032270 exon3 c.C2099A p.P700H TCCCCCCTGAAAT . 77 29 43 0 . 1 1 0 0 0 RBM15 64783 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 110882978 110882978 + Silent SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . RBM15-661 NM_022768 exon1 c.T951C p.P317P GCCCCCTCCACCT . 112 53 214 1 . 5 5 0 0 0 ANKRD35 148741 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 145561688 145561688 + Missense_Mutation SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ANKRD35-95 NM_144698 exon10 c.A1376G p.Q459R CTGACCAGCTGCC . 113 48 169 0 . 0 0 0 0 0 ATP8B2 57198 bcgsc.ca 37 1 154314970 154314970 + Missense_Mutation SNP G G C rs201587979 alternate_allele TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ATP8B2-92 NM_020452 exon14 c.G1357C p.V453L TTTGACGTCCTGG . 65 14 95 0 G|0.999;A|0.001 7 7 0 0 0 ATP8B2 57198 bcgsc.ca 37 1 154314972 154314972 + Silent SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ATP8B2-92 NM_020452 exon14 c.C1359T p.V453V TGACGTCCTGGGA . 65 15 96 0 . 7 7 0 0 0 MAEL 84944 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 166974561 166974561 + Missense_Mutation SNP C C A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . MAEL-91 NM_032858 exon8 c.C772A p.L258I AAATTTCTCAAGG . 62 28 33 0 . 2 2 0 0 0 CNTN2 6900 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 205028742 205028742 + Silent SNP C C A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CNTN2-91 NM_005076 exon7 c.C729A p.A243A CAAGGCCCGGTTC . 155 53 287 0 . 0 0 0 0 0 AHCTF1 25909 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 247070995 247070995 + Missense_Mutation SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . AHCTF1-97 NM_015446 exon5 c.G649A p.G217R GGCGCCCTTGTCT . 124 58 62 0 . 9 7 2 0 0 OR2L8 391190 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 1 248112473 248112473 + Missense_Mutation SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . OR2L8-70 NM_001001963 exon1 c.C314T p.A105V TCTTGGCATTAGG . 393 140 233 0 . 0 0 0 0 0 FAM208B 54906 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 5788364 5788364 + Missense_Mutation SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . . NM_017782 exon15 c.T2980C p.S994P CAGAGCTCTGTGT . 113 55 80 0 . 20 9 11 0 0 C1QL3 389941 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 10 16556595 16556595 + Missense_Mutation SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . C1QL3-91 NM_001010908 exon2 c.G700A p.G234R CTTTCCCGCCATC . 118 47 101 0 . 13 4 9 0 0 RUFY2 55680 broad.mit.edu;ucsc.edu 37 10 70152941 70152941 + Missense_Mutation SNP T T A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . RUFY2-91 NM_017987 exon7 c.A709T p.I237L CTAATATGGCAGC . 16 3 15 0 . 1 1 0 0 0 RUFY2 55680 broad.mit.edu;ucsc.edu 37 10 70152944 70152944 + Missense_Mutation SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . RUFY2-91 NM_017987 exon7 c.G706A p.A236T ATATGGCAGCAAT . 16 3 15 0 . 3 3 0 0 0 NOLC1 9221 hgsc.bcm.edu 37 10 103917063 103917063 + Silent SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . NOLC1-91 NM_004741 exon3 c.A294G p.Q98Q AGTTCAAGGGCCT . 57 3 60 1 . 31 31 0 0 0 PIDD 55367 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 803185 803185 + Missense_Mutation SNP G G T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . PIDD-205 NM_145887 exon3 c.C698A p.P233Q GAGGCTGGGAGGC . 50 25 96 2 . 5 4 1 0 0 MUC2 4583 broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 1097183 1097183 + Missense_Mutation SNP T T G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . MUC2-90 NM_002457 exon36 c.T6587G p.V2196G CACAGGTGCAGGT . 51 21 140 1 . 0 0 0 0 0 API5 8539 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 43342441 43342441 + Missense_Mutation SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . API5-136 NM_006595 exon3 c.T302C p.I101T CAGATATACTAAC . 93 42 65 0 . 34 20 14 0 0 OR8I2 120586 hgsc.bcm.edu;broad.mit.edu 37 11 55861616 55861616 + Missense_Mutation SNP C C T rs140206966 byfrequency;alternate_allele TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . OR8I2-113 NM_001003750 exon1 c.C833T p.T278M TCTATACGATTGT . 96 8 52 0 C|0.999;A|0.001 0 0 0 0 0 HNRNPUL2 221092 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 62488862 62488862 + Missense_Mutation SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . HNRNPUL2-22 NM_001079559 exon9 c.A1516G p.K506E GGCTTTTGGGGTC . 214 87 180 0 . 154 91 63 0 0 PCF11 51585 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 82877727 82877727 + Silent SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . PCF11-23 NM_015885 exon5 c.A1788G p.R596R CAAAAGATGGAAA . 135 65 67 0 . 34 21 13 0 0 MAML2 84441 hgsc.bcm.edu 37 11 95825424 95825424 + Missense_Mutation SNP G G T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . MAML2-850 NM_032427 exon2 c.C1771A p.Q591K GCTGCTGTTGCTG . 10 4 4 1 . 31 31 0 0 0 NCAM1 4684 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 11 113078684 113078684 + Missense_Mutation SNP G G C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . NCAM1-23 NM_001242608 exon8 c.G876C p.K292N GAACAAGGCTGGC . 20 6 27 0 . 0 0 0 0 0 C3AR1 719 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 8211578 8211578 + Missense_Mutation SNP G G A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . C3AR1-227 NM_004054 exon2 c.C1204T p.L402F CAGTAAGCAATGA . 67 8 69 0 . 16 16 0 0 0 KLRC1 3821 hgsc.bcm.edu 37 12 10602537 10602537 + Missense_Mutation SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . KLRC1-514 NM_002259 exon4 c.T313C p.S105P TCAGGGAAGAATT . 35 2 4 0 . 1 1 0 0 0 ESPL1 9700 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 53687232 53687232 + Missense_Mutation SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ESPL1-228 NM_012291 exon31 c.T6337C p.Y2113H ATAGCCTATGGCT . 97 45 133 0 . 2 1 1 0 0 ALDH2 217 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 112227694 112227694 + Missense_Mutation SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ALDH2-228 NM_000690 exon5 c.T508C p.Y170H TTCAGCTACACAC . 61 21 81 0 . 262 152 110 0 0 HNF1A 6927 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 12 121437158 121437158 + Missense_Mutation SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . HNF1A-1745 NM_000545 exon8 c.T1589C p.L530P CCAACCTGAGCGC . 116 54 399 0 . 19 12 7 0 0 SKA3 221150 hgsc.bcm.edu 37 13 21735928 21735928 + Splice_Site SNP C C T rs202104082 TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . SKA3-90 NM_001166017 exon6 c.829+1G>A . TACTTACCACTTT . 45 4 30 1 . 0 0 0 0 0 BRCA2 675 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 32907353 32907353 + Missense_Mutation SNP A A C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . BRCA2-3153 NM_000059 exon10 c.A1738C p.I580L GGTTTAATATCCA . 93 49 55 0 . 0 0 0 0 0 ESD 2098 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 13 47354151 47354151 + Silent SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ESD-91 NM_001984 exon8 c.T519C p.A173A AATTGGAGCAAAT . 101 42 76 0 . 181 86 95 0 0 OR11G2 390439 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 20666034 20666034 + Silent SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . OR11G2-70 NM_001005503 exon1 c.C540T p.T180T CTGTACCAATCTT . 112 39 63 0 . 0 0 0 0 0 SLC22A17 51310 hgsc.bcm.edu 37 14 23816377 23816377 + Missense_Mutation SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . SLC22A17-226 NM_020372 exon8 c.T1261C p.F421L AGGAGAAGAGCCC . 31 2 64 0 . 40 40 0 0 0 C14orf37 145407 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 58563683 58563683 + Missense_Mutation SNP C C G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . C14orf37-90 NM_001001872 exon5 c.G1848C p.E616D TTCATCCTCATCT . 55 27 31 0 . 2 0 2 0 0 SYNE2 23224 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 64596614 64596614 + Missense_Mutation SNP T T A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . SYNE2-164 NM_182914 exon75 c.T14134A p.L4712I TACAAATTAGAGG . 59 29 54 0 . 0 0 0 0 0 TTC8 123016 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 89307438 89307438 + Missense_Mutation SNP T T A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . TTC8-90 NM_144596 exon5 c.T387A p.S129R GCAGAGTGGAAGG . 127 52 114 0 . 7 3 4 0 0 CDC42BPB 9578 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 103438368 103438368 + Missense_Mutation SNP T T A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CDC42BPB-581 NM_006035 exon13 c.A1772T p.K591M TTCTGCTTCTGGG . 132 60 293 0 . 125 64 61 0 0 CEP170B 283638 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 14 105353612 105353612 + Missense_Mutation SNP T T G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . . NM_001112726 exon12 c.T3036G p.H1012Q GCAGCATCACCCA . 35 14 74 0 . 23 5 18 0 0 CATSPER2 117155 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 43928412 43928412 + Missense_Mutation SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CATSPER2-91 NM_054020 exon8 c.T848C p.L283P TTCGGGAGGTCCC . 73 28 52 0 . 0 0 0 0 0 NEO1 4756 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 73590713 73590713 + Missense_Mutation SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . NEO1-116 NM_002499 exon27 c.C3926T p.T1309I CCAGCACTGACAC . 70 36 88 0 . 56 26 30 0 0 IREB2 3658 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 15 78755356 78755356 + Missense_Mutation SNP T T A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . IREB2-90 NM_004136 exon3 c.T199A p.L67I AACATTTTAGACT . 183 75 107 0 . 8 5 3 0 0 KIAA1199 57214 hgsc.bcm.edu 37 15 81166242 81166242 + Missense_Mutation SNP G G C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . KIAA1199-93 NM_018689 exon2 c.G22C p.D8H AGGCAGGACTTCC . 8 2 15 0 . 0 0 0 0 0 ADAMTSL3 57188 hgsc.bcm.edu 37 15 84592741 84592741 + Silent SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ADAMTSL3-1153 NM_207517 exon17 c.T2073C p.P691P CCGTCCTCCAGCC . 59 4 60 1 . 17 17 0 0 0 SCNN1B 6338 hgsc.bcm.edu 37 16 23366804 23366804 + Missense_Mutation SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . SCNN1B-157 NM_000336 exon4 c.A770G p.N257S CCTGCAACTACCG . 56 3 135 1 . 0 0 0 0 0 HS3ST4 9951 hgsc.bcm.edu 37 16 26147416 26147416 + Silent SNP G G A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . HS3ST4-67 NM_006040 exon2 c.G1218A p.P406P TGCCCCGAGGTGC . 32 2 29 0 . 0 0 0 0 0 SEPHS2 22928 broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 30456715 30456715 + Missense_Mutation SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . SEPHS2-138 . . . . CTGGAAAGGTGGG . 34 19 43 0 . 30 15 15 0 0 SRCAP 10847 hgsc.bcm.edu;bcgsc.ca 37 16 30733505 30733505 + Missense_Mutation SNP G G A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . SRCAP-94 NM_006662 exon22 c.G3604A p.G1202R AATGCAGGGGGAA . 102 38 245 0 . 7 7 0 0 0 CDH8 1006 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 16 61851550 61851550 + Silent SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CDH8-161 NM_001796 exon7 c.G1110A p.G370G AAAGGGCCCCCTG . 90 44 82 0 . 0 0 0 0 0 NAE1 8883 hgsc.bcm.edu 37 16 66857505 66857505 + Splice_Site SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . NAE1-69 NM_003905 exon6 c.250-2A>G . CGGTTCTTTTTAA . 47 3 26 0 . 0 0 0 0 0 USP10 9100 hgsc.bcm.edu 37 16 84779219 84779219 + Missense_Mutation SNP G G A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . USP10-636 NM_001272075 exon5 c.G1144A p.V382I AAGCAGGTTGAAG . 30 4 34 1 . 54 54 0 0 0 CDT1 81620 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 88872437 88872437 + Missense_Mutation SNP G G A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CDT1-227 NM_030928 exon6 c.G841A p.G281R GCTGACGGAGCAG . 12 5 36 0 . 0 0 0 0 0 DLG4 1742 bcgsc.ca 37 17 7100206 7100206 + Missense_Mutation SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C - - - - Unknown Untested Somatic Phase_1 WXS none Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . DLG4-24 NM_001365 exon11 c.G1082A p.R361Q GAGCCCCGGTGGA . 41 4 72 0 . 4 4 0 0 0 MAP2K4 6416 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 12016635 12016635 + Silent SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . MAP2K4-3134 NM_003010 exon7 c.T771C p.S257S GGACTCTATTGCC . 159 104 81 0 . 42 14 28 0 0 NAGLU 4669 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 17 40695935 40695935 + Silent SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . NAGLU-90 NM_000263 exon6 c.C1911T p.F637F CGATTTCTACGAG . 21 10 43 0 . 12 12 0 0 0 LSM12 124801 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 17 42117589 42117589 + Silent SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . LSM12-90 NM_152344 exon4 c.G294A p.K98K GCTCAGCTTCTCC . 67 42 60 0 . 33 14 19 0 0 HEATR6 63897 hgsc.bcm.edu 37 17 58156270 58156270 + Silent SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . HEATR6-227 NM_022070 exon1 c.T6C p.A2A CACAGCAGCCATC . 24 2 37 0 . 1 1 0 0 0 ERN1 2081 hgsc.bcm.edu 37 17 62133043 62133043 + Missense_Mutation SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ERN1-784 NM_001433 exon13 c.A1664G p.D555G CCATCGTCTTGTT . 50 3 82 0 . 0 0 0 0 0 MYOM1 8736 hgsc.bcm.edu 37 18 3188882 3188882 + Missense_Mutation SNP C C T rs200770047 TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . MYOM1-94 NM_003803 exon4 c.G635A p.R212K GACTGCCTGGATG . 99 5 158 2 C|1.000;T|0.000 0 0 0 0 0 AMH 268 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 19 2249551 2249551 + Missense_Mutation SNP G G T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . AMH-130 NM_000479 exon1 c.G220T p.G74W GTGGTGGGGGCTC . 11 6 33 0 . 0 0 0 0 0 CLEC4M 10332 hgsc.bcm.edu 37 19 7832420 7832420 + Missense_Mutation SNP A A T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CLEC4M-91 NM_014257 exon6 c.A955T p.T319S CTGCAGACTTCCA . 90 6 100 0 . 0 0 0 0 0 ADAMTS10 81794 hgsc.bcm.edu 37 19 8645860 8645860 + Missense_Mutation SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ADAMTS10-229 NM_030957 exon26 c.T3229C p.Y1077H GGCAGTAGGCGAC . 23 2 68 0 . 1 1 0 0 0 DHX34 9704 hgsc.bcm.edu 37 19 47856881 47856881 + Nonsense_Mutation SNP C C G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . DHX34-231 NM_014681 exon2 c.C594G p.Y198X CCAGTACCTGCTG . 31 2 79 0 . 8 8 0 0 0 TAF1B 9014 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 10051000 10051000 + Missense_Mutation SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . TAF1B-92 NM_005680 exon10 c.T1091C p.V364A TTGTGGTGGTATT . 76 32 53 1 . 4 2 2 0 0 LPIN1 23175 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 11960558 11960558 + Missense_Mutation SNP G G C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . LPIN1-156 NM_001261428 exon21 c.G2686C p.V896L AAGCAAGTAGGAG . 74 28 51 0 . 6 6 0 0 0 LPIN1 23175 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 11960560 11960560 + Silent SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . LPIN1-156 NM_001261428 exon21 c.A2688G p.V896V GCAAGTAGGAGTG . 75 29 50 0 . 7 7 0 0 0 KIF3C 3797 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 26178417 26178417 + Missense_Mutation SNP A A C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . KIF3C-94 NM_002254 exon3 c.T1763G p.L588R TTCTTGAGTTTCT . 155 62 299 0 . 0 0 0 0 0 PLEKHH2 130271 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 43953471 43953471 + Missense_Mutation SNP G G T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . PLEKHH2-92 NM_172069 exon17 c.G2602T p.D868Y TCTTGTGATTCAG . 74 27 42 0 . 61 27 34 0 0 RAB1A 5861 hgsc.bcm.edu 37 2 65318133 65318133 + Missense_Mutation SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . RAB1A-227 NM_004161 exon4 c.A272G p.Y91C ACATCATACACAA . 32 2 16 0 . 196 196 0 0 0 DNAH6 1768 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 84777109 84777109 + Silent SNP A A T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . DNAH6-69 NM_001370 exon9 c.A1413T p.L471L CAAGCTAAAACGA . 66 25 34 0 . 0 0 0 0 0 ATG9A 79065 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 220090289 220090289 + Missense_Mutation SNP A A C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ATG9A-91 NM_001077198 exon6 c.T218G p.F73C AAGAGGAACTGCC . 59 22 63 0 . 0 0 0 0 0 SPHKAP 80309 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 228860230 228860230 + Silent SNP G G C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . SPHKAP-167 NM_030623 exon8 c.C4629G p.S1543S CCTCATGGATCGC . 283 107 298 1 . 0 0 0 0 0 SNPH 9751 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 20 1286555 1286555 + Missense_Mutation SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . SNPH-92 NM_014723 exon6 c.C1342T p.R448W TCCCAGCGGCGCC . 13 7 33 0 . 2 1 1 0 0 FRG1B 284802 broad.mit.edu 37 20 29628236 29628236 + RNA SNP G G C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . FRG1B-22 . . . . AAAATGGCTTTGT . 272 11 162 1 . 0 0 0 0 0 LSM14B 149986 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 20 60705292 60705292 + Missense_Mutation SNP G G A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . LSM14B-22 NM_144703 exon5 c.G613A p.A205T CCGGCAGCTGTGC . 12 5 29 0 . 27 17 10 0 0 CABLES2 81928 hgsc.bcm.edu 37 20 60982024 60982024 + Silent SNP C C T rs146975578 TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CABLES2-91 NM_031215 exon1 c.G309A p.L103L GCTGAGCAGGCCC . 3 3 6 1 C|0.860;T|0.140 0 0 0 0 0 DOPEY2 9980 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 37626086 37626086 + Missense_Mutation SNP G G A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . DOPEY2-91 NM_005128 exon23 c.G5138A p.S1713N CGGCAAGTGCATC . 177 75 220 1 . 7 7 0 0 0 BRWD1 54014 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 40641908 40641908 + Missense_Mutation SNP T T A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . BRWD1-94 NM_018963 exon15 c.A1447T p.I483F ACATAATTCTGGA . 48 26 20 0 . 8 4 4 0 0 PDE9A 5152 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 21 44152003 44152003 + Missense_Mutation SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . PDE9A-92 NM_002606 exon5 c.A386G p.E129G AGGTAGAGCCCAG . 50 26 121 0 . 11 9 2 0 0 COL6A1 1291 hgsc.bcm.edu 37 21 47421874 47421874 + Splice_Site SNP G G A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . COL6A1-91 NM_001848 exon31 c.1957-1G>A . CCCACAGTTCGAG . 30 2 73 0 . 0 0 0 0 0 SPECC1L 23384 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 24734414 24734414 + Missense_Mutation SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . SPECC1L-92 NM_001145468 exon9 c.C2621T p.T874I TGAAAACCCCTCC . 216 89 242 0 . 51 28 23 0 0 GGT1 2678 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 22 25023938 25023938 + Missense_Mutation SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . GGT1-90 NM_013430 exon13 c.T1328C p.I443T ATTTCATCCAGCC . 99 48 225 0 . 0 0 0 0 0 CHKB 1120 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 22 51018475 51018475 + Silent SNP A A C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CHKB-90 NM_005198 exon8 c.T855G p.V285V ATCATAAACCCAC . 134 54 125 0 . 20 14 6 0 0 CAMK1 8536 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 9802445 9802445 + Missense_Mutation SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CAMK1-335 NM_003656 exon8 c.G640A p.G214S GGTAACCGCAGAG . 46 22 76 0 . 3 2 1 0 0 ARIH2OS 646450 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 48956091 48956091 + Silent SNP T T A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . . NM_001123040 exon1 c.A492T p.P164P AGACGCTGGTAGG . 58 34 100 0 . 0 0 0 0 0 ARHGEF3 50650 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 56789065 56789065 + Missense_Mutation SNP T T A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ARHGEF3-228 NM_001128615 exon6 c.A415T p.T139S CGAAGGTCTCACT . 184 87 267 1 . 7 5 2 0 0 RNF13 11342 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 3 149678575 149678575 + Missense_Mutation SNP C C G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . RNF13-227 NM_007282 exon11 c.C830G p.T277S AAAAAACCTGTCC . 69 24 61 0 . 92 46 46 0 0 PSMD2 5708 hgsc.bcm.edu 37 3 184019770 184019770 + Silent SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . PSMD2-90 NM_002808 exon5 c.C615T p.C205C GGCTTGCGACCTG . 165 9 150 1 . 82 80 1 0 1 GABRA2 2555 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 46312218 46312218 + Silent SNP A A T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . GABRA2-94 NM_000807 exon6 c.T531A p.A177A TGAATGAGCATCC . 125 52 67 0 . 0 0 0 0 0 CLOCK 9575 hgsc.bcm.edu 37 4 56322462 56322462 + Missense_Mutation SNP C C G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CLOCK-515 NM_004898 exon12 c.G798C p.M266I AGTGCACATTTCC . 25 2 7 0 . 0 0 0 0 0 HERC5 51191 hgsc.bcm.edu 37 4 89408218 89408218 + Splice_Site SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . HERC5-664 NM_016323 exon15 c.1852-2A>G . ATTTTTAGGACGC . 35 2 21 0 . 0 0 0 0 0 GALNTL6 442117 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 4 173269759 173269759 + Missense_Mutation SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . GALNTL6-137 NM_001034845 exon5 c.C472T p.R158W CTCCTGCGGACCA . 171 88 73 0 . 0 0 0 0 0 SLC9A3 6550 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 476140 476140 + Missense_Mutation SNP T T A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . SLC9A3-90 NM_004174 exon14 c.A2135T p.E712V CCTTTCTCCTTGA . 24 9 77 0 . 20 20 0 0 0 ADAMTS16 170690 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 5235155 5235155 + Missense_Mutation SNP G G C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ADAMTS16-275 NM_139056 exon13 c.G1879C p.G627R TGTGAGGGCTCCA . 81 34 126 0 . 22 15 7 0 0 DROSHA 29102 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 31526783 31526783 + Missense_Mutation SNP G G T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . DROSHA-227 NM_013235 exon4 c.C257A p.P86H GACGGAGGCATGG . 46 22 47 1 . 17 4 13 0 0 IL7R 3575 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 35876145 35876145 + Missense_Mutation SNP G G T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . IL7R-157 NM_002185 exon8 c.G937T p.D313Y GTGGATGACATTC . 87 37 62 0 . 3 3 0 0 0 TBCA 6902 hgsc.bcm.edu;broad.mit.edu 37 5 76987260 76987260 + Missense_Mutation SNP C C A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . TBCA-91 NM_004607 exon4 c.G310T p.V104L ACTTCACTGAATC . 38 13 10 1 . 215 109 106 0 0 PPIC 5480 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 122359696 122359696 + Silent SNP T T A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . PPIC-91 NM_000943 exon5 c.A513T p.T171T CACCACTGTCTGG . 188 76 177 0 . 0 0 0 0 0 PCDHA8 56140 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140223201 140223201 + Silent SNP G G A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . PCDHA8-92 NM_031856 exon1 c.G2295A p.P765P GCCACCGAAGACG . 40 32 64 0 . 0 0 0 0 0 PCDHGA12 26025 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 140811805 140811805 + Silent SNP G G A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . PCDHGA12-27 NM_032094 exon1 c.G1479A p.E493E GGCTGAGAACACC . 87 36 161 0 . 0 0 0 0 0 LARP1 23367 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 154183178 154183178 + Missense_Mutation SNP T T A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . LARP1-94 NM_015315 exon13 c.T2081A p.V694D CCACTGTCCCAGA . 64 29 98 0 . 85 49 36 0 0 PANK3 79646 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 5 167995656 167995656 + Missense_Mutation SNP G G A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . PANK3-91 NM_024594 exon2 c.C376T p.R126C CTGTGCGAAAATC . 102 36 71 0 . 0 0 0 0 0 DHX16 8449 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 30640454 30640454 + Silent SNP G G T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . DHX16-228 NM_003587 exon1 c.C165A p.L55L CCCACTGAGATCC . 66 24 174 0 . 10 10 0 0 0 DHX16 8449 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 30640464 30640464 + Missense_Mutation SNP G G T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . DHX16-228 NM_003587 exon1 c.C155A p.T52N TCCAAGGTATCAG . 70 23 177 0 . 13 13 0 0 0 MDN1 23195 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 90426453 90426453 + Missense_Mutation SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . MDN1-100 NM_014611 exon44 c.G6659A p.G2220D AATGTGCCATGGC . 94 38 73 0 . 4 2 2 0 0 SIM1 6492 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 6 100895187 100895187 + Missense_Mutation SNP A A T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . SIM1-94 NM_005068 exon8 c.T955A p.S319T TGGAGGAGCGACT . 59 22 100 0 . 17 8 9 0 0 AHR 196 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 17362177 17362177 + Missense_Mutation SNP A A T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . AHR-227 NM_001621 exon3 c.A306T p.R102S CTGTAGAGCAGCA . 102 47 24 0 . 177 91 86 0 0 TWISTNB 221830 ucsc.edu 37 7 19738032 19738032 + Silent SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic WXS none Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . TWISTNB-91 NM_001002926 exon4 c.G924A p.K308K TTTTTTCTTTTTA . 419 5 125 0 . 16 16 0 0 0 CHN2 1124 ucsc.edu;bcgsc.ca 37 7 29519827 29519827 + Missense_Mutation SNP T T C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic WXS none Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CHN2-229 NM_001039936 exon1 c.T101C p.F34S TAGCCTTCGGGGT . 46 26 38 0 . 0 0 0 0 0 PDE1C 5137 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 31877507 31877507 + Silent SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . PDE1C-94 NM_001191058 exon11 c.G1239A p.K413K AGCAGTCTTCATT . 416 169 130 0 . 0 0 0 0 0 PCLO 27445 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 7 82579067 82579067 + Missense_Mutation SNP C C A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . PCLO-29 NM_014510 exon6 c.G10837T p.A3613S AAGGAGCCAGCTG . 234 127 87 0 . 15 8 7 0 0 MET 4233 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 116422117 116422117 + Missense_Mutation SNP T T A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . MET-5874 NM_001127500 exon18 c.T3652A p.F1218I AAAAAGTTTGTCC . 75 31 22 0 . 546 296 249 1 0 CHRNB3 1142 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 42565553 42565553 + Missense_Mutation SNP G G A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CHRNB3-91 NM_000749 exon3 c.G225A p.M75I GCTGATGACAACC . 37 21 44 0 . 0 0 0 0 0 RBM12B 389677 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 94747484 94747484 + Silent SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . RBM12B-90 NM_203390 exon3 c.T1155C p.H385H TGAAACATGTCCG . 236 96 133 0 . 8 5 3 0 0 VPS13B 157680 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 8 100514063 100514063 + Missense_Mutation SNP C C T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . VPS13B-301 NM_152564 exon26 c.C4019T p.P1340L TTGCTCCAGATCC . 140 54 111 0 . 4 2 2 0 0 DGAT1 8694 ucsc.edu 37 8 145540219 145540219 + Missense_Mutation SNP A A T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic WXS none Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . . NM_012079 exon17 c.T1465A p.X489R CAGCTCAGGCCTC . 6 1 24 0 . 14 14 0 0 0 HUWE1 10075 hgsc.bcm.edu 37 X 53563131 53563131 + Missense_Mutation SNP A A G novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . HUWE1-280 NM_031407 exon80 c.T12508C p.Y4170H GGTCATAGCCTAG . 40 2 23 0 . 58 58 0 0 0 ATP8B2 57198 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 1 154314963 154314968 + In_Frame_Del DEL GTTTGA GTTTGA - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 GTTTGA GTTTGA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ATP8B2-92 NM_020452 exon14 c.1350_1355del p.450_452del . . 67 13 101 0 . 0 0 0 0 0 ATP8B2 57198 hgsc.bcm.edu 37 1 154314963 154314972 + Frame_Shift_Del DEL GTTTGACGTC GTTTGACGTC - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 GTTTGACGTC GTTTGACGTC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ATP8B2-92 NM_020452 exon14 c.1350_1359del p.450_453del . . 68 11 102 0 . 0 0 0 0 0 ITGB1 3688 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 10 33201013 33201013 + Frame_Shift_Del DEL G G - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . ITGB1-1084 NM_002211 exon12 c.1509delC p.S503fs . . 95 41 69 0 . 0 0 0 0 0 TPP1 1200 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 11 6638089 6638089 + Frame_Shift_Del DEL A A - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . TPP1-90 NM_000391 exon7 c.689delT p.F230fs . . 103 54 171 0 . 0 0 0 0 0 DUSP6 1848 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 12 89743102 89743107 + In_Frame_Del DEL CTGGAA CTGGAA - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 CTGGAA CTGGAA . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . DUSP6-846 NM_001946 exon3 c.1070_1075del p.357_359del . . 129 41 146 0 . 0 0 0 0 0 MIS18BP1 55320 broad.mit.edu 37 14 45693722 45693722 + Frame_Shift_Del DEL T T - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . MIS18BP1-90 NM_018353 exon11 c.2068delA p.S690fs TGGGACTTTTTTT . 152 7 67 0 . 0 0 0 0 0 SRCAP 10847 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 16 30733503 30733503 + Frame_Shift_Del DEL C C - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 C C . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . SRCAP-94 NM_006662 exon22 c.3602delC p.A1201fs . . 97 33 238 0 . 0 0 0 0 0 SRCAP 10847 hgsc.bcm.edu 37 16 30733507 30733507 + Frame_Shift_Del DEL G G - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . SRCAP-94 NM_006662 exon22 c.3606delG p.G1202fs . . 102 27 245 0 . 0 0 0 0 0 SUPT6H 6830 broad.mit.edu 37 17 27001303 27001305 + In_Frame_Del DEL GAG GAG - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 GAG GAG . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . SUPT6H-93 NM_003170 exon3 c.112_114del p.38_38del CCAGATGAGGAGG . 83 7 44 0 . 0 0 0 0 0 MBOAT2 129642 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 9002791 9002791 + Frame_Shift_Del DEL A A - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . MBOAT2-90 NM_138799 exon11 c.1114delT p.W372fs . . 86 39 61 0 . 0 0 0 0 0 POTEF 728378 hgsc.bcm.edu 37 2 130872496 130872496 + Frame_Shift_Del DEL T T - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . POTEF-27 NM_001099771 exon5 c.768delA p.K256fs . . 114 18 91 0 . 0 0 0 0 0 POTEE 445582 hgsc.bcm.edu 37 2 131981572 131981572 + Frame_Shift_Del DEL A A - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 A A . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . . NM_001083538 exon3 c.766delA p.K256fs . . 131 29 69 0 . 0 0 0 0 0 HOXD8 3234 broad.mit.edu;bcgsc.ca 37 2 176995325 176995341 + Frame_Shift_Del DEL GCCCTCCGGGACTGGGT GCCCTCCGGGACTGGGT - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 GCCCTCCGGGACTGGGT GCCCTCCGGGACTGGGT . . . . Unknown Untested Somatic Phase_I WXS none Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . HOXD8-90 NM_001199746 exon1 c.231_247del p.77_83del CCCGCCGCCCTCC . 14 6 30 0 . 0 0 0 0 0 TNF 7124 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 31545047 31545049 + In_Frame_Del DEL CCC CCC - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 CCC CCC . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . TNF-1085 NM_000594 exon4 c.435_437del p.145_146del . . 119 42 259 0 . 0 0 0 0 0 REV3L 5980 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 111695488 111695488 + Frame_Shift_Del DEL T T - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 T T . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . REV3L-294 NM_002912 exon13 c.4070delA p.N1357fs . . 134 52 55 0 . 0 0 0 0 0 CTTNBP2 83992 hgsc.bcm.edu;bcgsc.ca 37 7 117431391 117431391 + Frame_Shift_Del DEL G G - novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 G G . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CTTNBP2-94 NM_033427 exon4 c.1859delC p.T620fs . . 105 29 102 0 . 0 0 0 0 0 CD97 976 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 19 14518917 14518918 + Frame_Shift_Ins INS - - A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CD97-570 NM_078481 exon20 c.2492_2493insA p.S831fs . . 47 18 98 0 . 0 0 0 0 0 RBKS 64080 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 2 28004505 28004506 + Frame_Shift_Ins INS - - T novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . RBKS-92 NM_022128 exon8 c.946_947insA p.D316fs . . 134 42 108 0 . 0 0 0 0 0 DAXX 1616 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 6 33287821 33287822 + Nonsense_Mutation INS - - A novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . DAXX-731 NM_001141970 exon5 c.1468_1469insT p.E490_E491delinsX . . 22 10 30 0 . 0 0 0 0 0 CTTNBP2 83992 hgsc.bcm.edu;broad.mit.edu;bcgsc.ca 37 7 117431390 117431391 + Frame_Shift_Ins INS - - C novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 - - . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . CTTNBP2-94 NM_033427 exon4 c.1860_1861insG p.T620fs . . 103 55 102 0 . 0 0 0 0 0 MCM6 4175 hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca 37 2 136620201 136620202 + Missense_Mutation DNP CT CT AG novel TCGA-IZ-8196-01A-11D-2396-08 TCGA-IZ-8196-10A-01D-2396-08 CT CT . . . . Unknown Untested Somatic Phase_I WXS none . . Illumina HiSeq dccd5469-1539-42f2-9023-47320e9e4275 d5a2fa8f-8c51-4867-b806-5f49d4b33c1a . MCM6 exon8 c.A1195C p.S399L CTGTACTTGGGTC . 179.0 78.0 142.0 0.0 . 0 0 0 0 0