Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SFN	2810	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	27189915	27189915	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	SFN-658	NM_006142	exon1	c.A212G	p.E71G	GCAACGAGGAGGG	.	116	46	106	0	.	15	10	5	0	0
PIAS3	10401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	145578967	145578967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	PIAS3-658	NM_006099	exon4	c.C545T	p.A182V	CAGGAGCCAAATG	.	131	48	126	0	.	4	3	1	0	0
TSACC	128229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156309583	156309583	+	Splice_Site	SNP	G	G	C	rs113369857	alternate_allele	TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	.	NM_144627	exon2	c.34+1G>C	.	GAAAAGGTGTGTG	.	59	17	68	0	.	0	0	0	0	0
HSPA6	3310	hgsc.bcm.edu	37	1	161495275	161495275	+	Missense_Mutation	SNP	T	T	C	rs200790521		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	HSPA6-226	NM_002155	exon1	c.T827C	p.L276P	GCACCCTGTCCTC	.	52	4	26	0	.	10	8	2	0	0
LBR	3930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	225598057	225598057	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	LBR-228	NM_194442	exon10	c.C1250G	p.S417C	GCCAAGGATGGAA	.	161	57	159	1	.	12	8	4	0	0
COL13A1	1305	hgsc.bcm.edu	37	10	71582134	71582134	+	Missense_Mutation	SNP	C	C	T	rs200528707		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	COL13A1-91	NM_080802	exon2	c.C304T	p.L102F	TGGAAGCTCCACT	.	26	13	4	0	C|0.999;T|0.001	0	0	0	0	0
SFRP5	6425	hgsc.bcm.edu	37	10	99531063	99531063	+	Silent	SNP	T	T	C	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	SFRP5-658	NM_003015	exon1	c.A528G	p.P176P	GCTACCTGGAGGC	.	20	2	16	0	.	0	0	0	0	0
TCTN2	79867	bcgsc.ca	37	12	124171453	124171453	+	Missense_Mutation	SNP	A	A	G	rs139927033		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	TCTN2-91	NM_024809	exon6	c.A635G	p.N212S	ACGTCAATCCTCC	.	278	7	241	0	A|1.000;G|0.000	20	18	2	0	0
RPGRIP1	57096	hgsc.bcm.edu	37	14	21769356	21769356	+	Silent	SNP	C	C	G	rs144585562		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	RPGRIP1-140	NM_020366	exon3	c.C450G	p.L150L	ACAGCTCCACACA	.	12	8	10	2	C|0.993;G|0.007	0	0	0	0	0
HAUS4	54930	hgsc.bcm.edu;bcgsc.ca	37	14	23415759	23415759	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	HAUS4-91	NM_001166269	exon10	c.A1067T	p.Q356L	AACTCCTGGAGGG	.	89	5	90	0	.	83	83	0	0	0
ACIN1	22985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23549776	23549776	+	Silent	SNP	T	T	C	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	ACIN1-156	NM_001164814	exon6	c.A942G	p.V314V	TGGTTTTACTCTA	.	182	54	160	0	.	10	10	0	0	0
ADCY4	196883	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	24793367	24793367	+	Silent	SNP	C	C	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	ADCY4-93	NM_001198592	exon17	c.G1947T	p.L649L	TGCAGGCAGCCAG	.	80	6	66	0	.	0	0	0	0	0
JKAMP	51528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	59965574	59965574	+	Silent	SNP	T	T	C	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	JKAMP-67	NM_016475	exon5	c.T588C	p.L196L	TGCACTTTACTTC	.	31	12	19	0	.	59	29	30	0	0
VWA9	81556	bcgsc.ca	37	15	65871974	65871974	+	Silent	SNP	G	G	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	.	NM_001207058	exon12	c.C1275A	p.A425A	TAGAGCGGCCTTT	.	59	5	59	0	.	28	27	1	0	0
TBC1D2B	23102	ucsc.edu	37	15	78290635	78290635	+	Missense_Mutation	SNP	C	C	T	rs200408968		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	TBC1D2B-136	NM_144572	exon13	c.G2759A	p.R920Q	GCGCGTCGGTTCC	.	33	4	15	2	C|0.960;T|0.040	9	9	0	0	0
NLRC3	197358	bcgsc.ca	37	16	3594282	3594282	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	NLRC3-96	NM_178844	exon17	c.G2819A	p.R940H	AGTGCACGGGCCA	.	77	6	49	0	.	2	2	0	0	0
SBK1	388228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	28330355	28330355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	SBK1-311	NM_001024401	exon3	c.C266T	p.T89I	GCAAAACCAAGCT	.	250	85	211	0	.	2	0	2	0	0
GLG1	2734	broad.mit.edu	37	16	74640708	74640708	+	Silent	SNP	A	A	C	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	GLG1-136	NM_001145667	exon1	c.T285G	p.G95G	AGGCCCACCCGCC	.	28	10	16	3	.	1	1	0	0	0
KRTAP1-1	81851	hgsc.bcm.edu	37	17	39197304	39197304	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	.	NM_030967	exon1	c.A346G	p.I116V	ACCTGATACGGGT	.	79	6	39	0	.	0	0	0	0	0
FASN	2194	hgsc.bcm.edu	37	17	80041950	80041950	+	Missense_Mutation	SNP	G	G	A	rs45557233		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	FASN-90	NM_004104	exon29	c.C4999T	p.P1667S	CCCCGGGGCGCAC	.	8	6	1	0	G|0.970;A|0.030	3	1	2	0	0
PSG2	5670	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	43585217	43585217	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	PSG2-90	NM_031246	exon2	c.T246A	p.Y82X	TACTACATATGAT	.	513	141	456	0	.	2	2	0	0	0
PTGIR	5739	hgsc.bcm.edu	37	19	47126848	47126848	+	Missense_Mutation	SNP	C	C	T	rs2229131		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	PTGIR-522	NM_000960	exon2	c.G635A	p.R212H	TACATGCGGCAGA	.	7	4	3	1	C|1.000;|0.000	0	0	0	0	0
ZNF814	730051	broad.mit.edu	37	19	58385546	58385546	+	Missense_Mutation	SNP	G	G	T	rs201682072		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	.	NM_001144989	exon3	c.C1212A	p.D404E	TTTTTTGTCAGTG	.	20	4	15	0	.	0	0	0	0	0
ANKRD36B	57730	hgsc.bcm.edu	37	2	98156684	98156684	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	.	NM_025190	exon29	c.C1894G	p.Q632E	GTCTCTGAGAAGA	.	32	2	18	0	.	0	0	0	0	0
CALCRL	10203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	188245425	188245425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	CALCRL-523	NM_001271751	exon5	c.T274C	p.F92L	CCTGAAAGTAATC	.	67	34	41	0	.	3	2	1	0	0
WDR12	55759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	203762106	203762106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	WDR12-90	NM_018256	exon5	c.G371A	p.R124Q	CAGATCCGAGAAG	.	107	26	120	0	.	7	5	2	0	0
COL4A3	1285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	228145271	228145271	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	COL4A3-132	NM_000091	exon30	c.G2339T	p.G780V	TCCCTGGAACTCC	.	198	66	175	0	.	3	2	1	0	0
FBXO36	130888	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	230875429	230875429	+	Silent	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	FBXO36-227	NM_174899	exon4	c.A396G	p.K132K	TGATAAACTGTGG	.	64	17	46	0	.	7	6	1	0	0
TGM6	343641	broad.mit.edu;bcgsc.ca	37	20	2384361	2384361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	TGM6-94	NM_198994	exon9	c.C1228T	p.R410W	GAGAGCCGGGAGC	.	124	6	103	0	.	0	0	0	0	0
MIR1292	100302138	bcgsc.ca	37	20	2633483	2633483	+	RNA	SNP	T	T	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	.	.	.	.	.	TCCCGTTCCAGGT	.	33	8	28	0	.	0	0	0	0	0
COL6A2	1292	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	47542788	47542788	+	Splice_Site	SNP	G	G	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	COL6A2-515	NM_058175	exon21	c.1609-1G>A	.	GTCACAGGGAGGC	.	93	31	91	0	.	1	0	1	0	0
PCNT	5116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	47809247	47809247	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	PCNT-141	NM_006031	exon19	c.A3741T	p.E1247D	CCCAGAAAGTGTG	.	197	71	208	0	.	1	1	0	0	0
OSBP2	23762	hgsc.bcm.edu	37	22	31137192	31137192	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	OSBP2-114	NM_030758	exon2	c.T689A	p.L230Q	TCAACCTGTCCAC	.	79	4	71	0	.	0	0	0	0	0
TWF2	11344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52269098	52269098	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	TWF2-757	NM_007284	exon2	c.T50C	p.F17S	TTGGCAAAGAATT	.	103	33	80	0	.	28	22	6	0	0
FNDC3B	64778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	172025192	172025192	+	Silent	SNP	C	C	G	rs145255541	alternate_allele	TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	FNDC3B-155	NM_001135095	exon10	c.C1101G	p.S367S	CTGCTCCGAGCCT	.	131	39	106	0	C|1.000;T|0.000	5	3	2	0	0
PPP2R2C	5522	hgsc.bcm.edu	37	4	6325301	6325301	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	PPP2R2C-1084	NM_181876	exon9	c.T1072C	p.Y358H	TGTTGTAGGCCCC	.	40	2	27	0	.	0	0	0	0	0
TBC1D14	57533	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	7026865	7026865	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	TBC1D14-92	NM_001113361	exon13	c.C1892A	p.T631N	TCCTGACCAAGAT	.	168	45	134	0	.	21	10	11	0	0
CEP135	9662	hgsc.bcm.edu	37	4	56832006	56832006	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	CEP135-94	NM_025009	exon8	c.A1025G	p.K342R	CTGATAAAGAGCT	.	38	2	39	0	.	1	1	0	0	0
PDLIM5	10611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	95496927	95496927	+	Missense_Mutation	SNP	C	C	G	rs200734812	alternate_allele	TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	PDLIM5-117	NM_006457	exon5	c.C452G	p.T151S	CCTTCACCCCAGC	.	408	111	346	0	C|0.999;T|0.001	14	8	6	0	0
SH3RF1	57630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	170028338	170028338	+	Silent	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	SH3RF1-567	NM_020870	exon11	c.T2158C	p.L720L	ACTTCAACAAACC	.	77	23	63	0	.	5	2	3	0	0
MYO10	4651	hgsc.bcm.edu	37	5	16877717	16877717	+	Splice_Site	SNP	C	C	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	MYO10-3	NM_012334	exon3	c.120+1G>C	.	TTCTCACCTGACC	.	35	2	26	0	.	0	0	0	0	0
LOX	4015	hgsc.bcm.edu	37	5	121413456	121413456	+	Silent	SNP	G	G	C	rs2278226		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	LOX-650	NM_002317	exon1	c.C225G	p.A75A	AGGGACGGCGGCG	.	12	4	4	2	G|0.017;C|0.983	0	0	0	0	0
HINT1	3094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	130500845	130500845	+	Silent	SNP	G	G	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	HINT1-90	NM_005340	exon1	c.C54A	p.I18I	CCCAAAGATCGTG	.	107	40	70	0	.	538	297	240	1	0
TBC1D9B	23061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	179326225	179326225	+	Silent	SNP	C	C	T	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	TBC1D9B-154	NM_198868	exon3	c.G312A	p.E104E	ATCTTCCTCACTG	.	59	19	45	0	.	17	10	7	0	0
CDKAL1	54901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	20846322	20846322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	CDKAL1-92	NM_017774	exon9	c.A655G	p.T219A	GCTTGTACCTACT	.	69	23	73	0	.	5	1	4	0	0
TJAP1	93643	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	43472653	43472653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	TJAP1-90	NM_001146016	exon11	c.A734G	p.N245S	TGCTCAATTCAGC	.	182	20	161	0	.	12	12	0	0	0
THBS2	7058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	169642014	169642014	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	THBS2-95	NM_003247	exon6	c.G734C	p.R245P	CCCAGGCGCAGCG	.	91	34	92	0	.	13	11	2	0	0
ZNF679	168417	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	63726979	63726979	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	ZNF679-1	NM_153363	exon5	c.C968G	p.P323R	AGAAACCCTACAC	.	97	33	35	0	.	40	40	0	0	0
KCTD7	154881	hgsc.bcm.edu	37	7	66094155	66094155	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	KCTD7-92	NM_001167961	exon1	c.C104G	p.A35G	CGACGGCCACGCA	.	37	2	21	0	.	0	0	0	0	0
RELN	5649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	103292216	103292216	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	RELN-574	NM_173054	exon15	c.C1784G	p.T595S	TGGTTGGTAGAAA	.	90	43	29	0	.	2	0	2	0	0
JPH1	56704	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	75227665	75227665	+	Silent	SNP	G	G	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	JPH1-91	NM_020647	exon2	c.C570T	p.R190R	ACCGCCGCGGGTG	.	73	24	54	0	.	0	0	0	0	0
FAM135B	51059	broad.mit.edu;bcgsc.ca	37	8	139180285	139180285	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	FAM135B-31	NM_015912	exon12	c.A1111G	p.T371A	TGTGCGTCTGTAT	.	161	7	111	0	.	0	0	0	0	0
CYP11B1	1584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	143956729	143956729	+	Splice_Site	SNP	C	C	G	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	CYP11B1-94	NM_001026213	exon8	c.1122-1G>C	.	TAGAGCCTGGAGG	.	40	16	35	0	.	0	0	0	0	0
MLLT3	4300	hgsc.bcm.edu	37	9	20414373	20414373	+	Silent	SNP	G	G	A	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	MLLT3-660	NM_004529	exon5	c.C471T	p.S157S	GCTGCTGCTACTG	.	56	4	42	0	.	11	11	0	0	0
GPR3	2827	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27720330	27720350	+	In_Frame_Del	DEL	GCCTGGCTCTCAGCTGGCTCA	GCCTGGCTCTCAGCTGGCTCA	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	GCCTGGCTCTCAGCTGGCTCA	GCCTGGCTCTCAGCTGGCTCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	GPR3-91	NM_005281	exon2	c.28_48del	p.10_16del	.	.	184	32	204	0	.	0	0	0	0	0
ING4	51147	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	6761549	6761549	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	ING4-515	NM_001127582	exon6	c.536delG	p.G179fs	.	.	169	49	189	0	.	0	0	0	0	0
KIAA1199	57214	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	81221510	81221511	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	KIAA1199-93	NM_018689	exon20	c.2607_2608del	p.869_870del	.	.	141	54	97	0	.	0	0	0	0	0
ZNF347	84671	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	53643573	53643575	+	In_Frame_Del	DEL	TGA	TGA	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	TGA	TGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	ZNF347-90	NM_001172675	exon5	c.2509_2511del	p.837_837del	.	.	170	46	193	0	.	0	0	0	0	0
TTLL12	23170	broad.mit.edu;bcgsc.ca	37	22	43579135	43579149	+	In_Frame_Del	DEL	CACTTCCCCAGCGTC	CACTTCCCCAGCGTC	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	CACTTCCCCAGCGTC	CACTTCCCCAGCGTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	TTLL12-90	NM_015140	exon2	c.184_198del	p.62_66del	CCCAAACACTTCC	.	204	16	198	0	.	0	0	0	0	0
ACY1	95	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	52020519	52020519	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	ACY1-154	NM_001198897	exon7	c.525delG	p.E175fs	.	.	85	37	72	0	.	0	0	0	0	0
GIN1	54826	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	102444326	102444335	+	Frame_Shift_Del	DEL	AGTGTAGTTG	AGTGTAGTTG	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	AGTGTAGTTG	AGTGTAGTTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	GIN1-92	NM_017676	exon2	c.77_86del	p.26_29del	.	.	71	16	67	0	.	0	0	0	0	0
ZDHHC14	79683	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	158093775	158093785	+	Frame_Shift_Del	DEL	TTCAGAGCACC	TTCAGAGCACC	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	TTCAGAGCACC	TTCAGAGCACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	ZDHHC14-227	NM_024630	exon9	c.1088_1098del	p.363_366del	.	.	71	11	63	0	.	0	0	0	0	0
PURB	5814	broad.mit.edu	37	7	44924131	44924131	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	PURB-90	NM_033224	exon1	c.817delT	p.C273fs	ACCGGCAAAAGGC	.	419	7	199	0	.	0	0	0	0	0
FGD4	121512	bcgsc.ca	37	12	32777967	32777968	+	In_Frame_Ins	INS	-	-	TTTTTT	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	FGD4-229	NM_139241	exon13	c.1600_1601insTTTTTT	p.I534delinsIFF	AATGCAATTGCAA	.	177	17	189	0	.	0	0	0	0	0
DGKH	160851	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	42742631	42742632	+	Missense_Mutation	DNP	GG	GG	AT	novel		TCGA-J7-6720-01A-11D-2136-08	TCGA-J7-6720-10A-01D-2136-08	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f51e571-67b3-4e0a-a5b5-bdc9a788d1d1	ee153c70-16dc-47aa-b326-e5341dc09b2f	.	DGKH		exon11	c.G1175T	p.G392I	GCGATGGAAGTGT	.	69.0	19.0	80.0	0.0	.	0	0	0	0	0