Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
UBR4	23352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	19504023	19504023	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	UBR4-612	NM_020765	exon19	c.C2569G	p.R857G	GGAGGCGAGCCAA	.	256	130	248	0	.	0	0	0	0	0
GJB5	2709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	35223633	35223633	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	GJB5-91	NM_005268	exon2	c.C702T	p.T234T	CGGTACCACCTCT	.	332	145	415	0	.	0	0	0	0	0
GNL2	29889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	38040324	38040324	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	GNL2-91	NM_013285	exon11	c.G1244C	p.W415S	TTCTCCCAAGAAT	.	92	46	93	0	.	15	12	3	0	0
ATP1A1	476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	116941337	116941337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ATP1A1-91	NM_000701	exon16	c.A2219G	p.D740G	GCTCAGATGTGTC	.	152	60	165	0	.	288	140	148	0	0
LCE2A	353139	hgsc.bcm.edu	37	1	152671534	152671534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	LCE2A-68	NM_178428	exon2	c.G157A	p.G53S	TGCTGCGGCTCCA	.	40	6	16	0	.	0	0	0	0	0
OR6Y1	391112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158517180	158517180	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	OR6Y1-69	NM_001005189	exon1	c.G716A	p.R239H	TTTTGGCGGCCCT	.	173	81	179	0	.	0	0	0	0	0
PRRC2C	23215	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	171506567	171506567	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	.	NM_015172	exon15	c.A2453G	p.Q818R	AGCCTCAACAAGC	.	146	58	147	1	.	0	0	0	0	0
FAM129A	116496	ucsc.edu	37	1	184767284	184767284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	FAM129A-94	NM_052966	exon13	c.C1595T	p.T532I	ATATTGGTATGAT	.	41	4	29	0	.	0	0	0	0	0
TMEM206	55248	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	212548558	212548558	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	TMEM206-153	NM_001198862	exon8	c.C1051T	p.P351S	TGAAAGGATCTTT	.	190	68	139	1	.	3	2	1	0	0
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	228469852	228469852	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	OBSCN-403	NM_001271223	exon36	c.G9703T	p.E3235X	GCCGGGGAGGTGG	.	232	108	154	0	.	1	1	0	0	0
LYST	1130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	235884164	235884164	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	LYST-143	NM_000081	exon40	c.C9357T	p.L3119L	ATTAGGGAGGTTA	.	71	28	76	0	.	0	0	0	0	0
ZNF438	220929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	31134006	31134006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ZNF438-154	NM_182755	exon8	c.C2371T	p.L791F	GGAGGAGGTCCTC	.	143	53	152	0	.	12	8	4	0	0
ZNF33B	7582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	43088357	43088357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ZNF33B-90	NM_006955	exon5	c.A2041G	p.I681V	GTAAAATAAGTCC	.	76	32	60	0	.	1	1	0	0	0
RRP12	23223	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	99116859	99116859	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	RRP12-92	NM_015179	exon34	c.C3886T	p.R1296X	AGGGTCGACGATC	.	59	28	62	1	.	36	17	19	0	0
AFAP1L2	84632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	116100456	116100456	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	AFAP1L2-136	NM_032550	exon2	c.C51T	p.F17F	CTTGAGGAAGTCA	.	95	33	106	0	.	0	0	0	0	0
OR51G2	81282	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	4936503	4936503	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	OR51G2-70	NM_001005238	exon1	c.A391G	p.I131V	GGCAGATAGCCAC	.	56	23	52	0	.	0	0	0	0	0
SYT13	57586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	45277229	45277229	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SYT13-91	NM_020826	exon2	c.C397G	p.L133V	GAGGGAGGATGAA	.	39	17	52	0	.	0	0	0	0	0
LTBP3	4054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65319017	65319017	+	Splice_Site	SNP	A	A	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	LTBP3-91	NM_001164266	exon10	c.1197+2T>A	.	ATACTCACTGAGT	.	107	35	128	0	.	0	0	0	0	0
SIPA1	6494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65412463	65412463	+	Missense_Mutation	SNP	G	G	A	rs146916012		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SIPA1-90	NM_006747	exon5	c.G1022A	p.R341Q	ACTGCCGGGCGGG	.	187	88	142	0	G|1.000;A|0.000	1	1	0	0	0
EXPH5	23086	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	108380539	108380539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	EXPH5-95	NM_015065	exon6	c.G5695A	p.E1899K	CATTTTCTAAGAA	.	125	42	136	1	.	1	0	1	0	0
CHEK1	1111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	125497532	125497532	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	CHEK1-1509	NM_001244846	exon3	c.A96C	p.E32D	AACTGAAGAAGCA	.	71	34	61	0	.	0	0	0	0	0
NFRKB	4798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	129747271	129747271	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	NFRKB-93	NM_006165	exon14	c.C1596T	p.D532D	CACATAGTCAGTT	.	74	27	111	0	.	0	0	0	0	0
C12orf57	113246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7053729	7053729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	C12orf57-90	NM_138425	exon2	c.G143T	p.G48V	ACATGGGTAAGAT	.	203	118	95	0	.	301	93	208	0	0
APOBEC1	339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7818467	7818467	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	APOBEC1-226	NM_001644	exon1	c.T2C	p.M1T	GAAGTCATGGTGC	.	226	54	153	0	.	0	0	0	0	0
PLEKHA5	54477	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	19500042	19500042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	PLEKHA5-227	NM_001256470	exon24	c.A2824G	p.R942G	TATAGCAGGGGCC	.	172	47	118	0	.	0	0	0	0	0
KIF21A	55605	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	39709737	39709737	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	KIF21A-97	NM_001173464	exon30	c.A3944G	p.H1315R	TACCTGTGTACCT	.	544	307	308	3	.	0	0	0	0	0
SPRYD4	283377	broad.mit.edu;bcgsc.ca	37	12	56862411	56862411	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SPRYD4-68	NM_207344	exon1	c.C36T	p.C12C	CTTGTGCCGCTGG	.	110	5	85	0	.	6	6	0	0	0
SLC5A8	160728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	101588897	101588897	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SLC5A8-90	NM_145913	exon4	c.G513A	p.V171V	GCAGACCACCCCC	.	108	61	101	0	.	0	0	0	0	0
BTBD11	121551	hgsc.bcm.edu	37	12	107713245	107713245	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	BTBD11-93	NM_001018072	exon1	c.G528A	p.A176A	GGCCGCGCACTGT	.	10	7	2	0	.	0	0	0	0	0
GPC6	10082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	94197565	94197565	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	GPC6-90	NM_005708	exon2	c.A210T	p.E70D	CACAGAAATGGAA	.	95	42	82	0	.	0	0	0	0	0
LRFN5	145581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	42360768	42360768	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	LRFN5-97	NM_152447	exon4	c.C1701T	p.S567S	GGTTAGCAATGTT	.	113	43	102	0	.	1	1	0	0	0
NEK9	91754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	75558059	75558059	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	NEK9-359	NM_033116	exon19	c.C2356T	p.R786X	TTCCTCGGTCTGC	.	70	32	74	0	.	1	1	0	0	0
ZBTB42	100128927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	105268528	105268528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	.	NM_001137601	exon2	c.G994A	p.V332M	GACGGCGTGGCAC	.	53	22	28	0	.	7	4	3	0	0
MTMR10	54893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	31251264	31251264	+	Silent	SNP	G	G	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	MTMR10-91	NM_017762	exon8	c.C819G	p.S273S	AGAATGGGAAAAG	.	85	38	82	0	.	2	0	2	0	0
COPS2	9318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	49421727	49421727	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	COPS2-227	NM_001143887	exon11	c.C1096T	p.L366F	TTATAAGCACTTG	.	85	35	104	0	.	23	14	9	0	0
AP4E1	23431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	51294808	51294808	+	Silent	SNP	T	T	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	AP4E1-90	NM_007347	exon21	c.T3363G	p.T1121T	TTCTACTCTTCCT	.	128	69	169	0	.	0	0	0	0	0
ADCY9	115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4164714	4164714	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ADCY9-139	NM_001116	exon2	c.C730T	p.L244L	AACTCAGGTACAA	.	154	55	170	0	.	0	0	0	0	0
MAP2K4	6416	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	11998978	11998978	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	MAP2K4-3134	NM_003010	exon4	c.C480T	p.Y160Y	CCCATACATTGTT	.	219	62	114	1	.	0	0	0	0	0
MPRIP	23164	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	17075111	17075111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	MPRIP-90	NM_015134	exon16	c.G2243A	p.R748Q	ACCAGCGGGAGCT	.	288	176	195	0	.	38	13	25	0	0
PCGF2	7703	broad.mit.edu	37	17	36891628	36891628	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	PCGF2-658	NM_007144	exon11	c.A883C	p.T295P	GGTGGGTGGCTGG	.	93	7	38	2	.	163	162	1	0	0
PSMC3IP	29893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40729246	40729246	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	PSMC3IP-92	NM_016556	exon3	c.C210G	p.I70M	AAAATAGATCTTC	.	173	66	118	0	.	8	3	5	0	0
NPEPPS	9520	broad.mit.edu	37	17	45682709	45682709	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	NPEPPS-90	NM_006310	exon17	c.G1886A	p.G629E	GAGCTGGAATCAT	.	130	6	78	0	.	0	0	0	0	0
SLC35B1	10237	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	47780367	47780367	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SLC35B1-90	NM_005827	exon8	c.A769C	p.I257L	TAAAGATGAAGCT	.	201	72	165	1	.	1	1	0	0	0
TRIM25	7706	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	54969126	54969126	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	TRIM25-289	NM_005082	exon9	c.G1828C	p.A610P	ACAAAGCCTCAGT	.	194	116	138	0	.	1	0	1	0	0
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	21508090	21508090	+	Silent	SNP	T	T	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	LAMA3-100	NM_198129	exon63	c.T8181C	p.F2727F	CAGATTTAACATT	.	137	50	117	0	.	0	0	0	0	0
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11134305	11134305	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SMARCA4-1523	NM_003072	exon20	c.A2971G	p.K991E	CCCGAAAAGGTGA	.	86	32	106	0	.	0	0	0	0	0
CYP2A13	1553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41599643	41599643	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	CYP2A13-93	NM_000766	exon6	c.T940G	p.F314V	TACGGTTTCCTGC	.	113	43	116	0	.	0	0	0	0	0
FAM110C	642273	hgsc.bcm.edu;broad.mit.edu	37	2	45688	45688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	FAM110C-68	NM_001077710	exon1	c.G698A	p.G233E	TCCCTCCCCAGGG	.	18	10	15	0	.	0	0	0	0	0
SMC6	79677	ucsc.edu	37	2	17881597	17881597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SMC6-292	NM_001142286	exon21	c.C2272T	p.H758Y	CCATATGTTCCTC	.	42	4	40	0	.	2	2	0	0	0
DNMT3A	1788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	25469542	25469542	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	DNMT3A-1924	NM_175629	exon10	c.G1226A	p.W409X	AGGGCCCATTCAA	.	112	48	124	0	.	0	0	0	0	0
C2orf16	84226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27801772	27801772	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	C2orf16-67	NM_032266	exon1	c.A2333T	p.E778V	AGCCTGAAGAGAC	.	39	16	44	0	.	0	0	0	0	0
GEMIN6	79833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	39008788	39008788	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	GEMIN6-226	NM_024775	exon3	c.C258T	p.F86F	TTTGTTCACGTCT	.	127	43	127	0	.	21	12	9	0	0
TSPYL6	388951	broad.mit.edu	37	2	54482521	54482521	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	TSPYL6-90	NM_001003937	exon1	c.C768T	p.F256F	GTGGCGGAAAGCA	.	129	5	141	0	.	0	0	0	0	0
ZNF638	27332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	71607375	71607375	+	Silent	SNP	T	T	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ZNF638-94	NM_014497	exon9	c.T2289C	p.T763T	AAAGACTTTAGAG	.	118	49	85	0	.	1	0	1	0	0
C2orf81	388963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	74643027	74643027	+	Silent	SNP	G	G	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	.	NM_001145054	exon3	c.C286A	p.R96R	CCTCCCGGGCCTG	.	117	49	85	0	.	23	9	14	0	0
FER1L5	90342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	97359251	97359251	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	FER1L5-23	NM_001113382	exon31	c.A3382T	p.I1128F	CCCTTCATTCGGG	.	85	34	78	0	.	0	0	0	0	0
ST6GAL2	84620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	107459932	107459932	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ST6GAL2-191	NM_032528	exon2	c.G502C	p.V168L	TCTGGACCTGTGC	.	165	63	123	0	.	0	0	0	0	0
RANBP2	5903	ucsc.edu;bcgsc.ca	37	2	109381778	109381778	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	RANBP2-675	NM_006267	exon20	c.C4783G	p.P1595A	AAGGCTCCAAAGA	.	441	193	387	2	.	0	0	0	0	0
TNFAIP6	7130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152235994	152235994	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	TNFAIP6-90	NM_007115	exon6	c.A781T	p.T261S	ACAAGTACTACTT	.	83	39	56	0	.	3	0	3	0	0
SLC4A10	57282	bcgsc.ca	37	2	162821643	162821643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SLC4A10-229	NM_001178015	exon23	c.C3119T	p.P1040L	TGATGCCCGAGAG	.	48	4	35	0	.	0	0	0	0	0
UNC80	285175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	210742711	210742711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	UNC80-90	NM_032504	exon24	c.G3880A	p.G1294R	TGCCACGGGGAAA	.	112	36	98	0	.	0	0	0	0	0
SMARCAL1	50485	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	217285132	217285132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SMARCAL1-293	NM_014140	exon5	c.G973A	p.A325T	CCATCAGCTCCAT	.	249	93	237	0	.	2	1	1	0	0
IGFBP5	3488	ucsc.edu;bcgsc.ca	37	2	217541549	217541549	+	Silent	SNP	C	C	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	IGFBP5-522	NM_000599	exon4	c.G744C	p.G248G	CTTCATCCCGTAC	.	329	128	317	3	.	1	0	1	0	0
KCNJ13	3769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233633228	233633228	+	Silent	SNP	A	A	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	KCNJ13-90	NM_002242	exon3	c.T756A	p.P252P	AGCCAGAGGACTT	.	200	87	164	0	.	0	0	0	0	0
GIGYF2	26058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233659498	233659498	+	Silent	SNP	T	T	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	GIGYF2-28	NM_001103147	exon15	c.T1386A	p.P462P	GATTCCTTCAGAT	.	92	44	94	0	.	0	0	0	0	0
SOGA1	140710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	35438421	35438421	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	.	NM_080627	exon7	c.G2547C	p.K849N	CTCCTCCTTTCGT	.	69	26	61	0	.	0	0	0	0	0
NPEPL1	79716	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	57282247	57282247	+	Silent	SNP	A	A	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	.	NM_024663	exon7	c.A891C	p.A297A	AGCCGCAATCAAG	.	20	9	30	0	.	0	0	0	0	0
RRP1B	23076	broad.mit.edu	37	21	45107950	45107950	+	Silent	SNP	C	C	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	RRP1B-91	NM_015056	exon13	c.C1695G	p.P565P	GCTGCCCCAGCGC	.	31	15	17	0	.	0	0	0	0	0
KRTAP10-11	386678	broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	46066418	46066418	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	KRTAP10-11-91	NM_198692	exon1	c.G43A	p.D15N	TACTCCGACTCCT	.	93	35	99	1	.	0	0	0	0	0
BID	637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	18226632	18226632	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	BID-1083	NM_197966	exon3	c.T298C	p.Y100H	CATCGTAGCCCTC	.	58	16	61	0	.	17	16	1	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885562	29885562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	NEFH-90	NM_021076	exon4	c.G1933A	p.E645K	AAGGAGGAAGCAA	.	160	41	130	0	.	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885638	29885638	+	Missense_Mutation	SNP	T	T	A	rs190692435		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	NEFH-90	NM_021076	exon4	c.T2009A	p.V670E	CCCCAGTGAAGGC	.	332	18	385	0	.	0	0	0	0	0
KIAA1407	57577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113697143	113697143	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	KIAA1407-92	NM_020817	exon16	c.T2496G	p.F832L	TACACAAAATTTT	.	63	27	45	0	.	3	3	0	0	0
ABCC5	10057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183669307	183669307	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ABCC5-137	NM_005688	exon20	c.C2866G	p.L956V	TTCGAAGGATCCT	.	71	41	86	0	.	3	2	1	0	0
KIAA0226	9711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	197408102	197408102	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	KIAA0226-22	NM_014687	exon16	c.C2328T	p.F776F	CTTGGAGAAGTTG	.	154	72	177	0	.	0	0	0	0	0
GAK	2580	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	882734	882734	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	GAK-568	NM_005255	exon11	c.A1106T	p.Q369L	TACGGCTGGTCGT	.	63	29	46	0	.	12	6	6	0	0
ADD1	118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	2916729	2916729	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ADD1-92	NM_176801	exon13	c.A1817G	p.Y606C	AGGAGTACCGCAG	.	196	89	197	0	.	103	62	41	0	0
SLC10A4	201780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	48487158	48487158	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SLC10A4-90	NM_152679	exon2	c.A800C	p.K267T	TTGTGAAGGTAAG	.	198	71	157	0	.	0	0	0	0	0
KIAA1211	57482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	57182735	57182735	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	KIAA1211-70	NM_020722	exon8	c.G3067A	p.E1023K	CCCGAGGAAAGGA	.	66	18	68	0	.	0	0	0	0	0
BTC	685	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	75695357	75695357	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	BTC-523	NM_001729	exon2	c.T74G	p.I25S	TGAAGGATCACTA	.	156	57	134	1	.	0	0	0	0	0
C4orf17	84103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	100434294	100434294	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	C4orf17-90	NM_032149	exon2	c.T56C	p.I19T	GCCATATTATGGC	.	151	65	132	0	.	0	0	0	0	0
NDST3	9348	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	118975229	118975229	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	NDST3-153	NM_004784	exon2	c.T164G	p.L55R	GCGACCTCCAACA	.	173	52	173	1	.	0	0	0	0	0
SH3D19	152503	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	152096316	152096316	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SH3D19-92	NM_001128924	exon1	c.A200T	p.E67V	TCCCACTCTCCAG	.	76	34	80	0	.	0	0	0	0	0
SH3D19	152503	hgsc.bcm.edu;bcgsc.ca	37	4	152096322	152096322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SH3D19-92	NM_001128924	exon1	c.C194T	p.S65F	TCTCCAGAAGCTC	.	83	40	85	0	.	0	0	0	0	0
FSTL5	56884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	162307106	162307106	+	Silent	SNP	T	T	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	FSTL5-158	NM_020116	exon16	c.A2337T	p.I779I	ACTCTTTATCATC	.	153	74	132	0	.	0	0	0	0	0
WDR17	116966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	177089815	177089815	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	WDR17-95	NM_170710	exon25	c.G3100C	p.V1034L	TGTTACGTTAACA	.	77	30	63	0	.	0	0	0	0	0
CCDC110	256309	ucsc.edu;bcgsc.ca	37	4	186382296	186382296	+	Silent	SNP	A	A	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	CCDC110-90	NM_152775	exon5	c.T255C	p.S85S	TATTTCACTGATT	.	40	4	43	0	.	0	0	0	0	0
TNPO1	3842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	72183032	72183032	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	TNPO1-228	NM_002270	exon12	c.T1286G	p.L429X	TGGTTTTAGGAGC	.	72	10	72	0	.	0	0	0	0	0
BRD8	10902	ucsc.edu;bcgsc.ca	37	5	137507060	137507060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	BRD8-91	NM_001164326	exon4	c.G226A	p.E76K	GTGTCTCAGTGGT	.	38	4	37	0	.	0	0	0	0	0
SLC23A1	9963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	138718252	138718252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SLC23A1-90	NM_005847	exon2	c.C79T	p.P27S	ACTTAGGCTCTGT	.	170	76	199	0	.	1	1	0	0	0
FAT2	2196	hgsc.bcm.edu	37	5	150911353	150911353	+	Silent	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	FAT2-96	NM_001447	exon13	c.C9606T	p.G3202G	GACGGTGCCCAGC	.	16	7	9	0	.	0	0	0	0	0
LCP2	3937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	169680134	169680134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	LCP2-23	NM_005565	exon18	c.G1234A	p.A412T	CCTCCGCGGGGGA	.	43	12	38	0	.	0	0	0	0	0
ADAMTS2	9509	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	178553061	178553061	+	Silent	SNP	G	G	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ADAMTS2-228	NM_014244	exon18	c.C2688A	p.A896A	GAGGGCGGCACAG	.	86	27	65	1	.	0	0	0	0	0
ZSCAN12	9753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	28359289	28359289	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	.	NM_001163391	exon4	c.G778C	p.D260H	TATGGTCAGAGTT	.	141	51	161	0	.	0	0	0	0	0
HSD17B8	7923	broad.mit.edu	37	6	33172821	33172821	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	HSD17B8-153	NM_014234	exon2	c.C195T	p.P65P	GCCGCCCCGAGGG	.	18	4	8	0	.	22	22	0	0	0
TAAR9	134860	broad.mit.edu;bcgsc.ca	37	6	132859693	132859693	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	.	.	.	.	.	CCCTTCAGCACAG	.	248	7	206	3	.	0	0	0	0	0
C6orf211	79624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151790234	151790234	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	C6orf211-90	NM_024573	exon5	c.G1315A	p.G439S	TACGATGGTCCCC	.	64	24	65	0	.	25	8	17	0	0
EIF2AK1	27102	hgsc.bcm.edu;bcgsc.ca	37	7	6078297	6078297	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	EIF2AK1-408	NM_014413	exon10	c.G1125C	p.Q375H	GTGGTACTGTGCC	.	134	21	93	0	.	0	0	0	0	0
SKAP2	8935	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	26729973	26729973	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SKAP2-91	NM_003930	exon10	c.G805C	p.E269Q	TGTCCTCTTCTTC	.	206	45	81	1	.	0	0	0	0	0
PLEKHA8	84725	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	30094389	30094389	+	Silent	SNP	T	T	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	PLEKHA8-357	NM_001197027	exon8	c.T861C	p.T287T	CTTGACTCAGTCT	.	353	139	143	0	.	0	0	0	0	0
POLM	27434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44114102	44114102	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	POLM-229	NM_013284	exon7	c.C863T	p.T288I	ACTGGGGTGCTCA	.	130	40	31	0	.	28	22	6	0	0
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44735721	44735721	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	OGDH-228	NM_002541	exon13	c.G1766T	p.W589L	CTCCCTGGCCTGG	.	155	35	84	0	.	0	0	0	0	0
OGDH	4967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44735723	44735723	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	OGDH-228	NM_002541	exon13	c.C1768A	p.P590T	CCCTGGCCTGGTG	.	153	34	81	0	.	0	0	0	0	0
NACAD	23148	broad.mit.edu	37	7	45123065	45123065	+	Missense_Mutation	SNP	G	G	A	rs201818400		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	.	NM_001146334	exon2	c.C2714T	p.P905L	GACACAGGCGTGG	.	94	4	36	0	G|0.998;A|0.002	15	6	9	0	0
GRB10	2887	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	50660660	50660660	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	GRB10-1272	NM_005311	exon16	c.G1774A	p.V592M	AGGCCACTCGGAT	.	307	73	187	1	.	42	33	9	0	0
CSPP1	79848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	68107797	68107797	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	CSPP1-138	NM_024790	exon29	c.C3635T	p.T1212I	CTTTCACTTGGCA	.	263	84	222	0	.	12	5	7	0	0
DCAF13	25879	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	104444950	104444950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	DCAF13-135	NM_015420	exon7	c.G1222T	p.A408S	TTTACAGCAGCAA	.	17	5	18	1	.	5	5	0	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110453596	110453596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	PKHD1L1-145	NM_177531	exon34	c.G4192A	p.G1398R	AACAATGGGAAAG	.	130	5	131	0	.	0	0	0	0	0
PUF60	22827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144902839	144902839	+	Silent	SNP	T	T	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	.	NM_078480	exon5	c.A345G	p.Q115Q	GACCGATTGCAAA	.	62	26	82	0	.	0	0	0	0	0
STOML2	30968	ucsc.edu;bcgsc.ca	37	9	35102144	35102144	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	STOML2-90	NM_013442	exon3	c.G231C	p.Q77H	GAGACTCTGCACA	.	199	80	196	2	.	44	23	21	0	0
ALDH1B1	219	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	38397069	38397069	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ALDH1B1-227	NM_000692	exon2	c.T1324C	p.Y442H	ACCAGGTATGGCC	.	139	51	133	2	.	20	8	12	0	0
ZNF462	58499	broad.mit.edu	37	9	109689599	109689599	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ZNF462-95	NM_021224	exon3	c.A3406G	p.R1136G	CAGAAAAGACACC	.	18	3	36	0	.	0	0	0	0	0
C9orf50	375759	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	132377793	132377793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	C9orf50-91	NM_199350	exon4	c.A850G	p.T284A	GGAGCGTTGTGTC	.	61	19	70	0	.	2	0	2	0	0
TPRN	286262	hgsc.bcm.edu	37	9	140094091	140094091	+	Missense_Mutation	SNP	A	A	G	rs60910563		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	TPRN-90	NM_001128228	exon1	c.T1073C	p.L358P	GGGCCCAGGTCTC	.	16	7	5	0	A|0.984;G|0.016	21	14	7	0	0
AKAP17A	8227	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	1719998	1719998	+	Silent	SNP	C	C	T	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	AKAP17A-40	NM_005088	exon5	c.C1599T	p.P533P	GGTCCCCGAGGAT	.	96	7	113	0	.	12	11	1	0	0
LPAR4	2846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	78010716	78010716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	LPAR4-133	NM_005296	exon2	c.C350A	p.A117E	GAACTGCATTCCT	.	110	92	128	0	.	0	0	0	0	0
MKI67	4288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	129902143	129902143	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	MKI67-519	NM_002417	exon13	c.7961delC	p.P2654fs	.	.	118	50	131	0	.	0	0	0	0	0
BDNF	627	hgsc.bcm.edu;bcgsc.ca	37	11	27680049	27680056	+	Frame_Shift_Del	DEL	CATGGGGG	CATGGGGG	-	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	CATGGGGG	CATGGGGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	BDNF-514	NM_001143810	exon3	c.302_309del	p.101_103del	.	.	91	27	121	0	.	0	0	0	0	0
TAS2R43	259289	hgsc.bcm.edu	37	12	11244149	11244149	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	TAS2R43-1	NM_176884	exon1	c.680delC	p.A227fs	.	.	32	17	10	0	.	0	0	0	0	0
PHF11	51131	bcgsc.ca	37	13	50098263	50098272	+	Frame_Shift_Del	DEL	CAGGACTTCT	CAGGACTTCT	-	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	CAGGACTTCT	CAGGACTTCT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	PHF11-90	NM_001040443	exon8	c.680_689del	p.227_230del	AGGAAGCAGGACT	.	60	6	76	0	.	0	0	0	0	0
TBCK	93627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	107163709	107163709	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	TBCK-336	NM_001163436	exon12	c.1088delG	p.G363fs	.	.	28	17	27	0	.	0	0	0	0	0
SH3D19	152503	hgsc.bcm.edu;bcgsc.ca	37	4	152096326	152096326	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	SH3D19-92	NM_001128924	exon1	c.190delG	p.A64fs	.	.	81	39	84	0	.	0	0	0	0	0
CANX	821	hgsc.bcm.edu;bcgsc.ca	37	5	179136997	179136997	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	CANX-90	NM_001746	exon7	c.652delC	p.H218fs	.	.	59	19	61	0	.	0	0	0	0	0
NFE2L3	9603	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	26224635	26224636	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	NFE2L3-94	NM_004289	exon4	c.1317_1318del	p.439_440del	.	.	172	42	97	0	.	0	0	0	0	0
NBPF9	400818	broad.mit.edu	37	1	144615250	144615251	+	Frame_Shift_Ins	INS	-	-	AA	rs202042060		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	.	.	.	.	.	CAAAGAGATGTTT	.	8	2	7	0	-|0.759;AA|0.241	0	0	0	0	0
NEFH	4744	broad.mit.edu	37	22	29885622	29885623	+	In_Frame_Ins	INS	-	-	AGGAAG	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	NEFH-90	NM_021076	exon4	c.1993_1994insAGGAAG	p.K665delinsKEE	CCTGAGAAGGCCA	.	294	8	342	0	.	0	0	0	0	0
EIF2AK1	27102	broad.mit.edu;bcgsc.ca	37	7	6078295	6078296	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	EIF2AK1-408	NM_014413	exon10	c.1127_1128insT	p.Y376fs	AGGTGGTACTGTG	.	137	20	92	0	.	0	0	0	0	0
EIF2AK1	27102	broad.mit.edu;bcgsc.ca	37	7	6078298	6078299	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	EIF2AK1-408	NM_014413	exon10	c.1124_1125insT	p.Q375fs	TGGTACTGTGCCT	.	134	20	92	0	.	0	0	0	0	0
VLDLR	7436	hgsc.bcm.edu;bcgsc.ca	37	9	2643309	2643310	+	In_Frame_Ins	INS	-	-	GCA	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	VLDLR-516	NM_003383	exon5	c.598_599insGCA	p.C200delinsCS	.	.	141	52	131	0	.	0	0	0	0	0
ZNF407	55628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	72345617	72345618	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-MH-A55Z-01A-11D-A26P-10	TCGA-MH-A55Z-10A-01D-A26P-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b19ec4cd-2876-4a2b-bcb9-b3c8db54fc15	3d292f02-ebb2-457b-b5a3-1590b60833a6	.	ZNF407-92	NM_001146190	exon1	c.C2643T	p.C881Y	TTTATGCAAAGTG	.	132.0	38.0	126.0	0.0	.	0	0	0	0	0