Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
IL22RA1	58985	broad.mit.edu	37	1	24465122	24465122	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	IL22RA1-91	NM_021258	exon2	c.C126A	p.D42E	CCCGCTGTCCCAC	.	86	4	117	0	.	3	3	0	0	0
TEKT2	27285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	36552574	36552574	+	Silent	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	TEKT2-90	NM_014466	exon6	c.C675T	p.N225N	GTTCAACAAGGAC	.	47	17	65	0	.	8	5	3	0	0
SLC35D1	23169	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	67519574	67519574	+	Silent	SNP	C	C	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	SLC35D1-90	NM_015139	exon1	c.G123T	p.L41L	CAGCTTCAGAAAC	.	115	35	194	0	.	0	0	0	0	0
C1orf173	127254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	75037280	75037280	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	C1orf173-94	NM_001002912	exon14	c.G4114T	p.A1372S	TATTTGCTATTGT	.	97	37	149	0	.	0	0	0	0	0
USP33	23032	broad.mit.edu;bcgsc.ca	37	1	78194350	78194350	+	Silent	SNP	T	T	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	USP33-659	NM_201626	exon11	c.A858G	p.E286E	TTTCAATTCTTCA	.	37	16	44	1	.	0	0	0	0	0
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94546179	94546179	+	Silent	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	ABCA4-162	NM_000350	exon8	c.C954T	p.I318I	AGACAGGATGCCC	.	97	30	138	0	.	0	0	0	0	0
SLC30A7	148867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	101387350	101387350	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	SLC30A7-90	NM_133496	exon8	c.A795G	p.I265M	GATGATAGCAGAT	.	31	11	59	0	.	2	2	0	0	0
FCGR2C	9103	broad.mit.edu	37	1	161559585	161559585	+	RNA	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	.	.	.	.	.	AGCGACCCTGTGC	.	369	56	504	1	.	23	23	0	0	0
IRF2BP2	359948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	234743060	234743060	+	Silent	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	IRF2BP2-90	NM_182972	exon2	c.C1587T	p.F529F	GAAGCAGAACTTG	.	99	38	99	0	.	73	36	37	0	0
DHTKD1	55526	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	12160902	12160902	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	DHTKD1-515	NM_018706	exon15	c.T2557C	p.Y853H	AGCAAATACAAAC	.	43	16	65	1	.	10	6	4	0	0
PTPLA	9200	broad.mit.edu	37	10	17636308	17636308	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	PTPLA-226	NM_014241	exon6	c.A680T	p.H227L	TTCACATGCGGCA	.	106	3	127	0	.	8	8	0	0	0
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	61829169	61829169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	ANK3-107	NM_020987	exon37	c.G11470A	p.V3824M	CTTTCACTGGGTT	.	57	23	76	0	.	0	0	0	0	0
MMRN2	79812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	88703695	88703695	+	Silent	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	MMRN2-153	NM_024756	exon6	c.C846T	p.A282A	AGCCCTGGCCACG	.	89	41	109	0	.	0	0	0	0	0
RRP12	23223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	99160073	99160073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	RRP12-92	NM_001145114	exon2	c.G358A	p.A120T	TGTGGGCAGCCGA	.	75	22	112	0	.	0	0	0	0	0
STK32C	282974	hgsc.bcm.edu	37	10	134036392	134036392	+	Silent	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	STK32C-1083	NM_173575	exon9	c.G1092A	p.K364K	CACCCTCTTCTCG	.	51	19	2	0	.	3	3	0	0	0
SLC22A18	5002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	2937874	2937874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	SLC22A18-92	NM_002555	exon6	c.G559T	p.A187S	ATCCTGGCTGCCC	.	124	50	57	0	.	67	36	31	0	0
PAMR1	25891	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	35454107	35454107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	PAMR1-70	NM_015430	exon12	c.C2011T	p.P671S	CAGTGGGTTCCCA	.	91	46	137	1	.	0	0	0	0	0
CLSTN3	9746	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	7295575	7295575	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	CLSTN3-153	NM_014718	exon11	c.G1651C	p.E551Q	TGTCGGGAGGGGC	.	174	101	210	2	.	35	16	19	0	0
MARS	4141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57894254	57894254	+	Silent	SNP	G	G	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	MARS-654	NM_004990	exon10	c.G1242C	p.R414R	GGCTCGGGGTGAC	.	187	44	213	0	.	40	28	12	0	0
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	35770159	35770159	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	NBEA-144	NM_015678	exon31	c.G5086T	p.G1696C	AGTACAGGCCCTG	.	111	57	100	0	.	0	0	0	0	0
EBPL	84650	broad.mit.edu	37	13	50235160	50235160	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	EBPL-90	NM_032565	exon4	c.C565G	p.L189V	GTTCTAGCCATGA	.	97	3	107	0	.	31	31	0	0	0
FSIP1	161835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	40056080	40056080	+	Silent	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	FSIP1-517	NM_152597	exon5	c.G501A	p.E167E	CATCTCCTCTTTA	.	121	49	155	0	.	0	0	0	0	0
NDUFAF1	51103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41689069	41689069	+	Silent	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	NDUFAF1-91	NM_016013	exon2	c.C189T	p.H63H	TTTCTGGTGATCT	.	60	24	77	0	.	18	12	6	0	0
SPG11	80208	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	44855441	44855441	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	SPG11-95	NM_025137	exon40	c.T7210A	p.Y2404N	CACAATATGTGAG	.	104	43	151	1	.	38	14	24	0	0
TICRR	90381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	90167321	90167321	+	Silent	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	.	NM_152259	exon20	c.G3780A	p.T1260T	GGGCACGCCTCAG	.	39	17	49	0	.	0	0	0	0	0
ANKS3	124401	hgsc.bcm.edu	37	16	4748510	4748510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	ANKS3-90	NM_133450	exon14	c.C1642A	p.R548S	GGGCGCGGTCCTG	.	25	17	1	0	.	44	14	30	0	0
GRIN2A	2903	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	10273887	10273887	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	GRIN2A-349	NM_000833	exon3	c.C382G	p.H128D	CCCCATGAATGCC	.	158	42	145	0	.	0	0	0	0	0
DBNDD1	79007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	90072805	90072805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	DBNDD1-90	NM_024043	exon4	c.C475A	p.P159T	GCTCGGGGTCGCC	.	62	16	38	0	.	15	11	4	0	0
DNAH2	146754	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7727530	7727530	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	DNAH2-102	NM_020877	exon75	c.A11570T	p.H3857L	CAGAGCACATGGG	.	100	56	27	0	.	2	0	2	0	0
MAPK7	5598	broad.mit.edu	37	17	19285118	19285118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	MAPK7-1402	NM_002749	exon5	c.C1502A	p.A501D	TGGAGGCTCCTGA	.	91	12	17	0	.	8	7	1	0	0
SPAG5	10615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	26912886	26912886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	SPAG5-90	NM_006461	exon7	c.A1736G	p.D579G	ACCGCATCCTTGC	.	79	48	74	0	.	0	0	0	0	0
KRT13	3860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	39658844	39658844	+	Silent	SNP	T	T	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	KRT13-95	NM_002274	exon6	c.A1026G	p.K342K	CCCCGCTTTCTGG	.	63	19	67	0	.	0	0	0	0	0
ZNF516	9658	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	74091620	74091620	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	ZNF516-69	NM_014643	exon4	c.G2450C	p.G817A	GGGGGGCCCGTGC	.	99	37	111	1	.	0	0	0	0	0
ELAVL1	1994	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8038748	8038748	+	Silent	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	ELAVL1-90	NM_001419	exon4	c.C291T	p.R97R	GCTCGGGCGAGCA	.	190	34	257	1	.	12	8	4	0	0
MUC16	94025	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9077779	9077779	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	MUC16-566	NM_024690	exon3	c.A9667C	p.T3223P	TCACAGTGGACCT	.	115	34	186	1	.	0	0	0	0	0
ILVBL	10994	broad.mit.edu	37	19	15227275	15227275	+	Silent	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	ILVBL-92	NM_006844	exon11	c.C1245A	p.A415A	GTCTGGGGCCCAG	.	84	3	81	0	.	79	78	0	0	1
LRP1B	53353	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	141771172	141771172	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	LRP1B-311	NM_018557	exon14	c.G2333T	p.R778I	GGTGGTCTTTCAT	.	187	40	217	0	.	0	0	0	0	0
GRB14	2888	hgsc.bcm.edu	37	2	165477654	165477654	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	GRB14-420	NM_004490	exon1	c.G166C	p.G56R	GGGTCCCGTCCGG	.	53	30	2	0	.	0	0	0	0	0
RNF25	64320	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	219536685	219536685	+	Silent	SNP	C	C	G	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	RNF25-227	NM_022453	exon1	c.G9C	p.A3A	CGCAGACGCCGCC	.	247	155	192	2	.	12	6	6	0	0
ATG9A	79065	hgsc.bcm.edu	37	2	220085516	220085516	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	ATG9A-91	NM_001077198	exon15	c.G2467A	p.V823M	CGGGCACGGGCTC	.	73	4	42	0	.	54	53	0	1	0
KIF1A	547	hgsc.bcm.edu	37	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	KIF1A-91	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	189	11	97	0	.	0	0	0	0	0
TMC2	117532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	2592879	2592879	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	TMC2-93	NM_080751	exon13	c.C1636G	p.L546V	TGGACTCTGTTTA	.	78	10	63	0	.	0	0	0	0	0
PANK2	80025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	3869791	3869791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	PANK2-115	NM_153638	exon1	c.C44T	p.A15V	GGGCGGCGCCGCC	.	113	34	85	0	.	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29623219	29623219	+	RNA	SNP	A	A	G	rs34726194		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	FRG1B-22	.	.	.	.	TCGACAATGGTCT	.	747	30	879	11	.	62	62	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29632680	29632680	+	RNA	SNP	G	G	A	rs4892355		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	FRG1B-22	.	.	.	.	TAAAAAGGCTCAG	.	514	52	441	10	G|0.500;A|0.500	52	52	0	0	0
KRTAP19-5	337972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	31874285	31874285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	KRTAP19-5-68	NM_181611	exon1	c.G124A	p.G42R	AGCCTCCGTAGCC	.	48	34	172	0	.	0	0	0	0	0
MYH9	4627	broad.mit.edu	37	22	36702092	36702092	+	Silent	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	MYH9-292	NM_002473	exon17	c.C2043A	p.G681G	CAGCTTGCCGGCC	.	76	7	72	1	.	0	0	0	0	0
TOP2B	7155	hgsc.bcm.edu	37	3	25705758	25705758	+	Missense_Mutation	SNP	C	C	T	rs145455403		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	TOP2B-273	NM_001068	exon1	c.G31A	p.A11T	CGCCGGCTCCCGC	.	14	8	0	0	C|0.983;T|0.016	2	1	1	0	0
SETD2	29072	hgsc.bcm.edu	37	3	47164505	47164505	+	Silent	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	SETD2-1273	NM_014159	exon3	c.C1621A	p.R541R	ACCCTCGTCGGAA	.	77	4	42	0	.	0	0	0	0	0
GMPPB	29925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49759370	49759370	+	Missense_Mutation	SNP	C	C	T	rs71324991		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	GMPPB-90	NM_013334	exon8	c.G979A	p.E327K	CCCTCTCCCCACC	.	113	67	81	0	C|0.500;T|0.500	0	0	0	0	0
UBA7	7318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49847782	49847782	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	UBA7-228	NM_003335	exon13	c.T1547A	p.L516Q	GGATCCAGTGGGT	.	254	148	270	0	.	1	0	1	0	0
ACTR8	93973	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	53913972	53913972	+	Silent	SNP	T	T	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	ACTR8-91	NM_022899	exon2	c.A288G	p.G96G	ATTTAGTCCCTCC	.	121	72	147	2	.	0	0	0	0	0
ERC2	26059	broad.mit.edu	37	3	56114913	56114913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	ERC2-24	NM_015576	exon7	c.G1573A	p.G525S	TTTCACCGGCCAG	.	66	4	81	0	.	0	0	0	0	0
IGF2BP2	10644	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	185542743	185542743	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	IGF2BP2-226	NM_001007225	exon1	c.G6C	p.M2I	CTTGTTCATCATC	.	169	34	88	0	.	2	2	0	0	0
NKX3-2	579	hgsc.bcm.edu	37	4	13545664	13545664	+	Silent	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	NKX3-2-68	NM_001189	exon1	c.C375T	p.L125L	CTGGCCGAGGCTC	.	29	18	3	0	.	0	0	0	0	0
NIPAL1	152519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	48037862	48037862	+	Silent	SNP	T	T	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	NIPAL1-68	NM_207330	exon6	c.T906C	p.N302N	CTTTAATACCTCT	.	145	58	201	0	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537018	88537018	+	Silent	SNP	T	T	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	DSPP-90	NM_014208	exon5	c.T3204C	p.D1068D	CAGTGATAGCAGT	.	328	16	515	13	.	0	0	0	0	0
IRX2	153572	broad.mit.edu;bcgsc.ca	37	5	2748624	2748624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	IRX2-226	NM_001134222	exon3	c.G1198A	p.A400T	GCGCCGCGTTCAA	.	68	9	56	0	.	0	0	0	0	0
PRDM9	56979	bcgsc.ca	37	5	23527640	23527640	+	Missense_Mutation	SNP	A	A	T	rs202203985		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	PRDM9-139	NM_020227	exon11	c.A2443T	p.N815Y	TTTAGCAATAAGT	.	182	62	233	1	.	0	0	0	0	0
FYB	2533	bcgsc.ca	37	5	39202408	39202408	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	FYB-24	NM_001243093	exon2	c.G685C	p.V229L	AAGACACATTCTT	.	66	4	83	0	.	0	0	0	0	0
MAP3K1	4214	hgsc.bcm.edu	37	5	56170960	56170960	+	Silent	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	MAP3K1-956	NM_005921	exon10	c.G1788T	p.L596L	CCTGCTGTTGGCA	.	72	4	96	0	.	2	2	0	0	0
TRIM23	373	broad.mit.edu;bcgsc.ca	37	5	64892965	64892965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	TRIM23-230	NM_033228	exon8	c.G1222A	p.V408I	ACGTAACGACCCG	.	84	5	110	0	.	3	3	0	0	0
MSH3	4437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	79970928	79970928	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	MSH3-661	NM_002439	exon7	c.A1154T	p.N385I	AGGGCAACATTTT	.	98	41	148	0	.	0	0	0	0	0
KDM3B	51780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	137717257	137717257	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	KDM3B-542	NM_016604	exon6	c.A758C	p.D253A	TGATGGATAATTC	.	72	25	87	0	.	0	0	0	0	0
ZNF354B	117608	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	178310106	178310106	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	ZNF354B-92	NM_058230	exon5	c.C653T	p.T218I	GCAGTACATGTGA	.	80	33	99	1	.	3	2	1	0	0
ZNF184	7738	ucsc.edu;bcgsc.ca	37	6	27420593	27420593	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	ZNF184-91	NM_007149	exon6	c.C745A	p.P249T	TGTAGGGTTTTTC	.	33	4	32	0	.	2	2	0	0	0
C4A	720	broad.mit.edu;bcgsc.ca	37	6	31962347	31962347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	C4A-44	NM_007293	exon21	c.G2665A	p.V889M	GTGCTGGTGCCTG	.	181	45	20	0	.	110	80	30	0	0
SYNGAP1	8831	broad.mit.edu;bcgsc.ca	37	6	33393615	33393615	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	SYNGAP1-48	NM_006772	exon3	c.G230C	p.S77T	AGTCCAGTCGCAA	.	160	48	143	1	.	0	0	0	0	0
CASP8AP2	9994	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	90573643	90573643	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	CASP8AP2-24	NM_001137667	exon7	c.T2215C	p.Y739H	TCAGATTATTGTG	.	68	5	113	0	.	0	0	0	0	0
LAMA2	3908	bcgsc.ca	37	6	129573388	129573388	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	LAMA2-162	NM_000426	exon14	c.A2044G	p.K682E	AATTTGAAGAGAG	.	56	4	80	0	.	0	0	0	0	0
REPS1	85021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	139262487	139262487	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	REPS1-522	NM_001128617	exon8	c.T1120A	p.L374M	CTTCCAAATCAAT	.	64	12	76	0	.	5	4	1	0	0
PDE1C	5137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	31862809	31862809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	PDE1C-94	NM_001191058	exon15	c.G1640T	p.G547V	TCTGAACCAGAGG	.	117	38	100	0	.	0	0	0	0	0
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	2824167	2824167	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	CSMD1-86	NM_033225	exon58	c.T9025C	p.Y3009H	TCTTGTAGCCTTC	.	122	50	211	0	.	0	0	0	0	0
NEFL	4747	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	24813800	24813800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	NEFL-24	NM_006158	exon1	c.C230T	p.A77V	ATGGCGGCTACCT	.	173	13	174	0	.	66	62	4	0	0
MATN2	4147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	99039960	99039960	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	MATN2-24	NM_002380	exon14	c.G2259T	p.R753S	GGCCAGGCCCCTT	.	137	52	124	0	.	13	6	7	0	0
GPR20	2843	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	142367789	142367789	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	GPR20-91	NM_005293	exon2	c.T235A	p.C79S	GGCAGCAGAAGAC	.	158	49	103	1	.	0	0	0	0	0
FOCAD	54914	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	20988333	20988333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	.	NM_017794	exon43	c.G4909A	p.V1637I	TCAGGCGTTTTGA	.	91	8	103	0	.	0	0	0	0	0
TOPORS	10210	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	32541932	32541932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	TOPORS-230	NM_005802	exon3	c.G2591A	p.S864N	CTTAGGCTCCGGG	.	38	11	72	0	.	8	7	1	0	0
FCN2	2220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	137777085	137777085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	FCN2-153	NM_004108	exon5	c.G302T	p.G101V	TCCCAGGCCCGCG	.	45	16	54	0	.	0	0	0	0	0
KCNT1	57582	hgsc.bcm.edu	37	9	138594140	138594140	+	Silent	SNP	C	C	G	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	KCNT1-137	NM_001272003	exon1	c.C36G	p.G12G	GGGGGGCGTCTGC	.	23	14	1	0	.	0	0	0	0	0
TBL1X	6907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	9683003	9683003	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	TBL1X-131	NM_001139466	exon17	c.C1667T	p.A556V	GGAACGCCCGAGG	.	178	81	272	0	.	13	1	12	0	0
PHKA1	5255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	71802352	71802352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	PHKA1-134	NM_002637	exon31	c.C3394T	p.L1132F	GGACAAGGATGGC	.	293	86	417	1	.	0	0	0	0	0
PCDH11X	27328	broad.mit.edu;bcgsc.ca	37	X	91873700	91873700	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	PCDH11X-193	NM_032968	exon7	c.C3805T	p.R1269C	CTCCATCGTAGTC	.	749	25	1032	1	.	0	0	0	0	0
GPR50	9248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	150348665	150348665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	GPR50-176	NM_004224	exon2	c.G610A	p.V204M	CTCATCGTGGGTT	.	43	12	80	0	.	0	0	0	0	0
RENBP	5973	hgsc.bcm.edu	37	X	153200791	153200791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	RENBP-132	NM_002910	exon11	c.C1232A	p.P411H	GGGGCGGGGCGGC	.	8	4	0	0	.	8	8	0	0	0
MIA3	375056	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	222803477	222803477	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	MIA3-98	NM_198551	exon4	c.2915delA	p.E972fs	.	.	73	32	76	0	.	0	0	0	0	0
IGFLR1	79713	hgsc.bcm.edu	37	19	36230984	36230986	+	In_Frame_Del	DEL	CGG	CGG	-	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	CGG	CGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	IGFLR1-90	NM_024660	exon4	c.346_348del	p.116_116del	.	.	34	11	44	0	.	0	0	0	0	0
SREBF2	6721	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	42289217	42289217	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	SREBF2-154	NM_004599	exon12	c.2305delT	p.F769fs	.	.	70	24	97	0	.	0	0	0	0	0
PLEC	5339	hgsc.bcm.edu	37	8	145024821	145024825	+	Frame_Shift_Del	DEL	CACCT	CACCT	-	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	CACCT	CACCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	PLEC-141	NM_201380	exon1	c.50_54del	p.17_18del	.	.	46	17	3	0	.	0	0	0	0	0
SLC14A1	6563	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	43316457	43316458	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	SLC14A1-515	NM_001128588	exon7	c.675_676insA	p.S225fs	.	.	128	51	156	0	.	0	0	0	0	0
VAPB	9217	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	57009683	57009684	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	VAPB-226	NM_004738	exon3	c.237_238insC	p.D79fs	.	.	79	21	89	0	.	0	0	0	0	0
PRRC2B	84726	broad.mit.edu	37	9	134351684	134351685	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	PRRC2B-24	NM_013318	exon15	c.4168_4169insG	p.R1390fs	GAGCGGCGGGAAG	.	88	13	45	0	.	0	0	0	0	0
DES	1674	hgsc.bcm.edu	37	2	220283244	220283245	+	Missense_Mutation	DNP	GG	GG	AT	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	DES-514	NM_001927	exon1	c.G61T	p.A21S	GGCGGGGCCCCGG	.	31.0	24.0	3.0	0.0	.	0	0	0	0	0
SSX5	6758	broad.mit.edu;bcgsc.ca	37	X	48053577	48053578	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-PJ-A5Z9-01A-11D-A28G-10	TCGA-PJ-A5Z9-10A-01D-A28G-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0040144d-5bfe-4476-b511-2fa1fed81583	32635493-96c3-4fed-a9f7-85537363c7f0	.	SSX5-90	NM_021015	exon5	c.C390A	p.NR130KS	CCCACGGTTAGGG	.	867	26	1114	1	.	0	0	0	0	0