Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
CROCC	9696	hgsc.bcm.edu	hg19	1	17297201	17297201	+	Missense_Mutation	SNP	G	G	A	rs150054438	alternate_allele	TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	CROCC	NM_014675	exon35	c.G5723A	p.R1908H	TGGACCGCACCCT	.	121.0	5.0	197.0	0.0	.	185	.	.	.	alt	G|1.000;T|0.000	.	PASS	Atlas-SNP
TAS1R2	80834	hgsc.bcm.edu	hg19	1	19181460	19181460	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	TAS1R2	NM_152232	exon3	c.C504T	p.S168S	CTCATCGCTGATG	.	33.0	8.0	59.0	0.0	.	134	.	.	.	none	.	.	PASS	Atlas-SNP
CD1A	909	hgsc.bcm.edu	hg19	1	158226807	158226807	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	CD1A,bladder,carcinoma,0,2	CD1A	NM_001763	exon4	c.G836A	p.R279Q	CCTGTCGGGTGAA	.	83.0	9.0	105.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
ITPKB	3707	hgsc.bcm.edu	hg19	1	226924884	226924884	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.,1	ITPKB	NM_002221	exon2	c.C276T	p.S92S	GCCGCTGCTGCCG	.	8.0	4.0	6.0	0.0	.	158	.	.	.	none	.	.	PASS	Atlas-SNP
TMIE	259236	hgsc.bcm.edu	hg19	3	46751076	46751076	+	Missense_Mutation	SNP	G	G	T	rs75020261	bycluster	TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	TMIE	NM_147196	exon4	c.G369T	p.K123N	GGATAAGAAGAAG	.	68.0	14.0	119.0	0.0	.	16	.	.	.	weak	.	.	PASS	Atlas-SNP
FAM157A	728262	hgsc.bcm.edu	hg19	3	197880167	197880167	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	FAM157A	NM_001145248	exon2	c.G246A	p.Q82Q	GCAGCAGCAGCAA	.	347.0	20.0	461.0	0.0	.	4	.	.	.	none	.	.	PASS	Atlas-SNP
SEC24A	10802	hgsc.bcm.edu	hg19	5	134010440	134010440	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	SEC24A	NM_001252231	exon5	c.C953G	p.P318R	ATTACCCAAGTGG	.	268.0	36.0	320.0	0.0	.	77	.	.	.	none	.	.	PASS	Atlas-SNP
DNAH8	1769	hgsc.bcm.edu	hg19	6	38818151	38818151	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	DNAH8	NM_001206927	exon38	c.T5324C	p.L1775S	CTCATTTACATGA	.	51.0	16.0	46.0	0.0	.	1239	.	.	.	none	.	.	PASS	Atlas-SNP
DLK2	65989	hgsc.bcm.edu	hg19	6	43422491	43422491	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	DLK2	NM_023932	exon2	c.C73T	p.R25X	CACCTCGGACAGG	.	54.0	5.0	112.0	0.0	.	22	.	.	.	none	.	.	PASS	Atlas-SNP
ACTB	60	hgsc.bcm.edu	hg19	7	5569022	5569022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	ACTB	NM_001101	exon3	c.G133A	p.V45M	TGCCCACCATCAC	.	113.0	17.0	204.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
ABCA13	154664	hgsc.bcm.edu	hg19	7	48278921	48278921	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	ABCA13	NM_152701	exon9	c.C981T	p.H327H	GGGCCACGTTGGA	.	48.0	4.0	58.0	0.0	.	1192	.	.	.	none	.	.	PASS	Atlas-SNP
FLNC	2318	hgsc.bcm.edu	hg19	7	128492929	128492929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	FLNC	NM_001458	exon37	c.C6052T	p.R2018C	AGCGTGCGCAAGA	.	125.0	16.0	249.0	0.0	.	339	.	.	.	none	.	.	PASS	Atlas-SNP
PPP1R3B	79660	hgsc.bcm.edu	hg19	8	8998922	8998922	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	PPP1R3B	NM_001201329	exon2	c.G240A	p.S80S	GAATTCCGAGAAC	.	53.0	5.0	68.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
FAM73B	84895	hgsc.bcm.edu	hg19	9	131832229	131832229	+	Silent	SNP	C	C	G	rs371991039	alternate_allele	TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	FAM73B	NM_032809	exon15	c.C1560G	p.V520V	TGAAGTCTGTGCT	.	49.0	9.0	74.0	0.0	.	37	.	.	.	alt	.	.	PASS	Atlas-SNP
ARRDC1	92714	hgsc.bcm.edu	hg19	9	140508149	140508149	+	Silent	SNP	C	C	G	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	ARRDC1	NM_152285	exon4	c.C363G	p.S121S	GTTTTCCAAGGAT	.	76.0	25.0	103.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
SNX19	399979	hgsc.bcm.edu	hg19	11	130781599	130781599	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	SNX19	NM_014758	exon2	c.G1742A	p.R581H	TAGCGACGATTCA	.	46.0	14.0	35.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
KRAS	3845	hgsc.bcm.edu	hg19	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	rs121913529	bycluster	TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	KRAS_ENST00000256078,NS,adenocarcinoma,0,66	KRAS	NM_004985	exon2	c.G35T	p.G12V	ACGCCACCAGCTC	.	128.0	46.0	142.0	0.0	.	30930	.	.	.	weak	.	.	PASS	Atlas-SNP
PKP2	5318	hgsc.bcm.edu	hg19	12	32949084	32949084	+	Silent	SNP	G	G	T	rs369837002	alternate_allele	TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	PKP2	NM_004572	exon12	c.C2448A	p.T816T	GCCCCCGGTGTTT	.	108.0	5.0	110.0	0.0	.	110	.	.	.	alt	.	.	PASS	Atlas-SNP
PTPRR	5801	hgsc.bcm.edu	hg19	12	71155255	71155255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	PTPRR	NM_002849	exon4	c.C623T	p.P208L	ACCTCAGGAGAGA	.	68.0	25.0	65.0	0.0	.	109	.	.	.	none	.	.	PASS	Atlas-SNP
IGDCC3	9543	hgsc.bcm.edu	hg19	15	65621833	65621833	+	Silent	SNP	T	T	G	rs375413312		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	IGDCC3	NM_004884	exon13	c.A2100C	p.G700G	CCGCTGTCCCCGT	.	48.0	18.0	87.0	0.0	.	82	.	.	.	weak	.	.	PASS	Atlas-SNP
CDH8	1006	hgsc.bcm.edu	hg19	16	61687964	61687964	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	CDH8	NM_001796	exon12	c.G1948T	p.E650X	ATGGTTCATTTTT	.	149.0	12.0	104.0	0.0	.	273	.	.	.	none	.	.	PASS	Atlas-SNP
KRTAP4-11	653240	hgsc.bcm.edu	hg19	17	39274266	39274266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	KRTAP4-11	NM_033059	exon1	c.G302A	p.R101H	CTGGGGCGGCAGC	.	40.0	5.0	40.0	0.0	.	94	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF536	9745	hgsc.bcm.edu	hg19	19	30935837	30935837	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	ZNF536,colon,carcinoma,0,1	ZNF536	NM_014717	exon2	c.C1368T	p.G456G	CAAGGGCGAGCTG	.	87.0	13.0	158.0	0.0	.	424	.	.	.	none	.	.	PASS	Atlas-SNP
ND4	0	hgsc.bcm.edu	hg19	MT	11484	11484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	.	ENST00000361381	exon1	c.G725A	p.G242D	GCTATGGTATAAT	.	277.0	275.0	10.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
CYTB	0	hgsc.bcm.edu	hg19	MT	15135	15135	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	.	ENST00000361789	exon1	c.G389A	p.G130D	TCATAGGCTATGT	.	324.0	33.0	8.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
HSPH1	10808	hgsc.bcm.edu	hg19	13	31722181	31722181	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	HSPH1	NM_006644	exon10	c.1294delC	p.L432fs	.	.	164.0	27.0	131.0	0.0	.	65	.	0.164634	0	none	.	.	PASS	Atlas-Indel,Pindel
DNAJA3	9093	hgsc.bcm.edu	hg19	16	4498749	4498752	+	Frame_Shift_Del	DEL	CAGA	CAGA	-	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	CAGA	CAGA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	DNAJA3	NM_001135110	exon9	c.1140_1143del	p.380_381del	.	.	72.0	13.0	96.0	0.0	.	52	.	0.180556	0	none	.	.	PASS	Atlas-Indel,Pindel
RIMBP3C	150221	hgsc.bcm.edu	hg19	22	21741340	21741341	+	In_Frame_Ins	INS	-	-	TGCAGG	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	RIMBP3C	NM_001128633	exon1	c.3193_3194insTGCAGG	p.L1065delinsLQV	.	.	16.0	16.0	22.0	0.0	.	6	.	1.000	.	none	.	.	PASS	Pindel
CFC1B	653275	hgsc.bcm.edu	hg19	2	131355536	131355543	+	Frame_Shift_Del	DEL	GCGCGGCC	GCGCGGCC	-	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	GCGCGGCC	GCGCGGCC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	.	NM_001079530	exon4	c.261_268del	p.87_90del	.	.	262.0	35.0	389.0	0.0	.	.	.	0.134	.	none	.	.	PASS	Pindel
CFC1B	653275	hgsc.bcm.edu	hg19	2	131280369	131280376	+	Frame_Shift_Del	DEL	CCGCGCGG	CCGCGCGG	-	novel		TCGA-2Z-A9JN-01A-21D-A42J-10	TCGA-2Z-A9JN-10A-01D-A42M-10	CCGCGCGG	CCGCGCGG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	050ee89a-518f-41ea-942d-90fbd6889673	fb9e10b8-d6e8-48d5-a356-cd64dd61c5b4	.	.	NM_001079530	exon4	c.253_260del	p.85_87del	.	.	219.0	57.0	425.0	0.0	.	.	.	0.260	.	none	.	.	PASS	Pindel