Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
MACF1	23499	hgsc.bcm.edu	hg19	1	39550024	39550024	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	MACF1	NM_012090	exon3	c.G134C	p.W45S	TGCCCTGGAACCT	.	44.0	15.0	52.0	0.0	.	909	.	.	.	none	.	.	PASS	Atlas-SNP
ZZZ3	26009	hgsc.bcm.edu	hg19	1	78034104	78034104	+	Silent	SNP	T	T	C	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	ZZZ3	NM_015534	exon13	c.A2379G	p.K793K	TAGTTCTTTATAT	.	241.0	114.0	228.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
SASS6	163786	hgsc.bcm.edu	hg19	1	100573051	100573051	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	SASS6	NM_194292	exon11	c.A1205C	p.K402T	TTCAATTTCAACT	.	181.0	77.0	176.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
WDR77	79084	hgsc.bcm.edu	hg19	1	111990187	111990187	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	WDR77	NM_024102	exon3	c.T313A	p.L105M	CCCACAATTCAAC	.	88.0	27.0	110.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
MTMR11	10903	hgsc.bcm.edu	hg19	1	149907227	149907227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	MTMR11	NM_001145862	exon4	c.A290G	p.D97G	GCAAAATCGTATT	.	151.0	52.0	196.0	0.0	.	136	.	.	.	none	.	.	PASS	Atlas-SNP
BNIPL	149428	hgsc.bcm.edu	hg19	1	151009216	151009216	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	BNIPL	NM_138278	exon1	c.A15T	p.Q5H	TATACAAGAGGCA	.	127.0	43.0	138.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
SLC27A3	11000	hgsc.bcm.edu	hg19	1	153751216	153751216	+	Missense_Mutation	SNP	T	T	A	rs141064582	alternate_allele	TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	SLC27A3	NM_024330	exon7	c.T1642A	p.Y548N	CTGGGCTATGCTG	.	20.0	8.0	38.0	0.0	.	42	.	.	.	alt	T|1.000;C|0.000	.	PASS	Atlas-SNP
DENND4B	9909	hgsc.bcm.edu	hg19	1	153903435	153903435	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	DENND4B	NM_014856	exon25	c.T4102G	p.W1368G	CCCTCCAGAGCAC	.	107.0	40.0	129.0	0.0	.	210	.	.	.	none	.	.	PASS	Atlas-SNP
HCN3	57657	hgsc.bcm.edu	hg19	1	155258126	155258126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	HCN3	NM_020897	exon8	c.G2197A	p.G733R	CGTAAGGGATCAG	.	47.0	21.0	60.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
PYHIN1	149628	hgsc.bcm.edu	hg19	1	158911893	158911893	+	Silent	SNP	A	A	C	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	PYHIN1	NM_152501	exon5	c.A706C	p.R236R	GAGCAAAGAAGAA	.	217.0	17.0	159.0	0.0	.	208	.	.	.	none	.	.	PASS	Atlas-SNP
ABCB10	23456	hgsc.bcm.edu	hg19	1	229684985	229684985	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	ABCB10	NM_012089	exon2	c.T714C	p.T238T	ACCTGAAGTTTGC	.	124.0	57.0	127.0	0.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
ADCY3	109	hgsc.bcm.edu	hg19	2	25042856	25042856	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	ADCY3	NM_004036	exon21	c.C3380T	p.T1127I	GGGAAGGTGGCTA	.	139.0	56.0	132.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
BIRC6	57448	hgsc.bcm.edu	hg19	2	32740321	32740321	+	Silent	SNP	T	T	C	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	BIRC6	NM_016252	exon55	c.T10833C	p.A3611A	TTTGGCTACCCTT	.	65.0	25.0	80.0	0.0	.	838	.	.	.	none	.	.	PASS	Atlas-SNP
LIMS1	3987	hgsc.bcm.edu	hg19	2	109292439	109292439	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	LIMS1	NM_001193485	exon6	c.C786T	p.I262I	GCCCATCGAAGGG	.	163.0	72.0	199.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
SP3	6670	hgsc.bcm.edu	hg19	2	174820712	174820712	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	SP3	NM_003111	exon4	c.C528T	p.I176I	TGACTGGATCTGT	.	104.0	44.0	127.0	0.0	.	82	.	.	.	none	.	.	PASS	Atlas-SNP
C2orf54	79919	hgsc.bcm.edu	hg19	2	241835325	241835325	+	Silent	SNP	C	C	G	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	C2orf54	NM_001085437	exon1	c.G90C	p.A30A	ACGCGGCGCCTCC	.	54.0	23.0	48.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
CNTN4	152330	hgsc.bcm.edu	hg19	3	3095549	3095549	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	CNTN4	NM_175607	exon24	c.C2870A	p.S957X	AAACATCGGTGGA	.	151.0	131.0	148.0	0.0	.	335	.	.	.	none	.	.	PASS	Atlas-SNP
HDAC11	79885	hgsc.bcm.edu	hg19	3	13525048	13525048	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	HDAC11	NM_024827	exon3	c.A236C	p.Y79S	GGCGCTATCTTAA	.	114.0	85.0	129.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
FGD5	152273	hgsc.bcm.edu	hg19	3	14922083	14922083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	FGD5	NM_152536	exon3	c.A2663G	p.E888G	AGGTGGAAGGACA	.	99.0	4.0	105.0	0.0	.	248	.	.	.	none	.	.	PASS	Atlas-SNP
SEC22C	9117	hgsc.bcm.edu	hg19	3	42594897	42594897	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	SEC22C	NM_032970	exon7	c.T755C	p.V252A	AGCACCACCTTCA	.	82.0	71.0	65.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
NCKIPSD	51517	hgsc.bcm.edu	hg19	3	48718979	48718979	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	NCKIPSD	NM_016453	exon5	c.C833G	p.T278S	GTACCAGTTGCCA	.	62.0	52.0	69.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
WDFY3	23001	hgsc.bcm.edu	hg19	4	85716133	85716133	+	Splice_Site	SNP	C	C	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	WDFY3	NM_014991	exon21	c.3168-1G>A	.	AGACATCTATTAA	.	387.0	134.0	367.0	0.0	.	314	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP24	83478	hgsc.bcm.edu	hg19	4	86916381	86916381	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	ARHGAP24	NM_001025616	exon9	c.A1574C	p.Q525P	TAGGCCAGCACAA	.	113.0	44.0	87.0	0.0	.	116	.	.	.	none	.	.	PASS	Atlas-SNP
POU4F2	5458	hgsc.bcm.edu	hg19	4	147560484	147560484	+	Silent	SNP	C	C	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	POU4F2	NM_004575	exon1	c.C192A	p.G64G	CGGCGGCGGCGGC	.	88.0	7.0	72.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA0922	23240	hgsc.bcm.edu	hg19	4	154523827	154523827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	KIAA0922	NM_001131007	exon23	c.C2587T	p.P863S	GTGGTTCCAGGAC	.	111.0	55.0	110.0	0.0	.	214	.	.	.	none	.	.	PASS	Atlas-SNP
AGA	175	hgsc.bcm.edu	hg19	4	178354476	178354476	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	AGA	NM_000027	exon8	c.A832T	p.R278X	CTCCTCTTCTCAT	.	72.0	27.0	117.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
FAT1	2195	hgsc.bcm.edu	hg19	4	187539964	187539964	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	FAT1	NM_005245	exon10	c.T7776C	p.N2592N	TGGTGCATTGTCA	.	73.0	29.0	95.0	0.0	.	500	.	.	.	none	.	.	PASS	Atlas-SNP
CLPTM1L	81037	hgsc.bcm.edu	hg19	5	1338066	1338066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	CLPTM1L	NM_030782	exon5	c.C631T	p.P211S	GGATGGGCAGGTA	.	92.0	32.0	94.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
RAI14	26064	hgsc.bcm.edu	hg19	5	34757673	34757673	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	RAI14	NM_001145525	exon5	c.C146T	p.A49V	CCAGTGCCACCAA	.	41.0	18.0	45.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
CMYA5	202333	hgsc.bcm.edu	hg19	5	79034827	79034827	+	Silent	SNP	T	T	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	CMYA5	NM_153610	exon2	c.T10239A	p.R3413R	GCTCCGTAATAGC	.	109.0	45.0	117.0	0.0	.	643	.	.	.	none	.	.	PASS	Atlas-SNP
ANKRD34B	340120	hgsc.bcm.edu	hg19	5	79854839	79854839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	ANKRD34B	NM_001004441	exon5	c.C1000A	p.Q334K	TGCATTGCTGATT	.	51.0	27.0	58.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
RHOBTB3	22836	hgsc.bcm.edu	hg19	5	95119657	95119657	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	RHOBTB3	NM_014899	exon10	c.A1613C	p.K538T	TGCTTAAAAAGGC	.	66.0	19.0	74.0	0.0	.	43	.	.	.	none	.	.	PASS	Atlas-SNP
PCSK1	5122	hgsc.bcm.edu	hg19	5	95761539	95761539	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	PCSK1	NM_000439	exon3	c.T381C	p.N127N	TTGCTGATTCCAC	.	49.0	16.0	65.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
FEM1C	56929	hgsc.bcm.edu	hg19	5	114860326	114860326	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	FEM1C	NM_020177	exon3	c.T1533C	p.T511T	TATTGCAGTAACT	.	65.0	26.0	100.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
DAAM2	23500	hgsc.bcm.edu	hg19	6	39824224	39824224	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	DAAM2	NM_015345	exon2	c.A146G	p.N49S	AGCTCAACATCCG	.	133.0	49.0	105.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
SNX14	57231	hgsc.bcm.edu	hg19	6	86303311	86303311	+	Silent	SNP	G	G	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	SNX14	NM_153816	exon1	c.C126A	p.S42S	AAGCAGGGAGGCG	.	136.0	54.0	126.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
NR2E1	7101	hgsc.bcm.edu	hg19	6	108492734	108492734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	NR2E1	NM_003269	exon2	c.G98A	p.C33Y	ACGCCTGCGACGG	.	80.0	26.0	88.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
THEMIS	387357	hgsc.bcm.edu	hg19	6	128134425	128134425	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	THEMIS	NM_001010923	exon4	c.G1361A	p.R454H	GGCAAACGGAACT	.	81.0	33.0	92.0	0.0	.	168	.	.	.	none	.	.	PASS	Atlas-SNP
ADAP1	11033	hgsc.bcm.edu	hg19	7	959664	959664	+	Missense_Mutation	SNP	C	C	T	rs373846581		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	ADAP1,mouth,carcinoma,0,1	ADAP1	NM_006869	exon4	c.G329A	p.R110Q	TTGGCCCGGATCC	.	32.0	3.0	26.0	0.0	.	23	.	.	.	weak	.	.	PASS	Atlas-SNP
FBXL18	80028	hgsc.bcm.edu	hg19	7	5541280	5541280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	FBXL18	NM_024963	exon3	c.C620T	p.T207M	TCGCGCGTGCGGT	.	123.0	5.0	118.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
SP4	6671	hgsc.bcm.edu	hg19	7	21468306	21468306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	SP4,colon,carcinoma,0,1	SP4	NM_003112	exon2	c.G19A	p.E7K	AAGAAGGAGGAGG	.	141.0	8.0	84.0	1.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
CPVL	54504	hgsc.bcm.edu	hg19	7	29135788	29135788	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	CPVL	NM_019029	exon4	c.C334A	p.P112T	CTCCCGGCCCACC	.	146.0	77.0	111.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
POLD2	5425	hgsc.bcm.edu	hg19	7	44156052	44156052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	POLD2	NM_006230	exon7	c.G943A	p.D315N	TCTCATCCAGCAT	.	84.0	31.0	53.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
PRKAR2B	5577	hgsc.bcm.edu	hg19	7	106685477	106685477	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	PRKAR2B	NM_002736	exon1	c.A125C	p.E42A	AGCAGGAGAACGA	.	80.0	54.0	66.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
C9orf85	138241	hgsc.bcm.edu	hg19	9	74586475	74586475	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	C9orf85	NM_182505	exon3	c.A264G	p.P88P	CAGGCCATGTGCC	.	54.0	17.0	58.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
SVEP1	79987	hgsc.bcm.edu	hg19	9	113212406	113212406	+	Missense_Mutation	SNP	C	C	T	rs376449068	bycluster	TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	SVEP1	NM_153366	exon24	c.G4036A	p.V1346I	CATCGACGTTCTT	.	112.0	51.0	90.0	0.0	.	326	.	.	.	weak	.	.	PASS	Atlas-SNP
RAB14	51552	hgsc.bcm.edu	hg19	9	123954485	123954485	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	RAB14	NM_016322	exon3	c.A70T	p.K24X	AAGATTTTCCTAC	.	30.0	14.0	30.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
COL5A1	1289	hgsc.bcm.edu	hg19	9	137694764	137694764	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	COL5A1	NM_000093	exon39	c.G3037T	p.E1013X	ATGGGTGAGCGTG	.	82.0	37.0	108.0	0.0	.	323	.	.	.	none	.	.	PASS	Atlas-SNP
OLFM1	10439	hgsc.bcm.edu	hg19	9	138011750	138011750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	OLFM1	NM_014279	exon6	c.C1130T	p.T377M	GGAACACGAGCTA	.	71.0	29.0	74.0	0.0	.	57	.	.	.	none	.	.	PASS	Atlas-SNP
INPP5E	56623	hgsc.bcm.edu	hg19	9	139333176	139333176	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	INPP5E	NM_019892	exon1	c.C696A	p.S232R	CAGGCTGCTGTGG	.	103.0	39.0	100.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
DIP2C	22982	hgsc.bcm.edu	hg19	10	387190	387190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	DIP2C	NM_014974	exon29	c.T3533C	p.I1178T	AGGCAGATGGCCA	.	116.0	54.0	124.0	0.0	.	195	.	.	.	none	.	.	PASS	Atlas-SNP
DIP2C	22982	hgsc.bcm.edu	hg19	10	390824	390824	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	DIP2C	NM_014974	exon28	c.C3378T	p.C1126C	AGGTTTGCAGATC	.	66.0	25.0	108.0	0.0	.	195	.	.	.	none	.	.	PASS	Atlas-SNP
DIP2C	22982	hgsc.bcm.edu	hg19	10	390825	390825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	DIP2C	NM_014974	exon28	c.G3377A	p.C1126Y	GGTTTGCAGATCT	.	65.0	25.0	111.0	0.0	.	195	.	.	.	none	.	.	PASS	Atlas-SNP
DIP2C	22982	hgsc.bcm.edu	hg19	10	390826	390826	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	DIP2C	NM_014974	exon28	c.T3376C	p.C1126R	GTTTGCAGATCTG	.	64.0	25.0	111.0	0.0	.	195	.	.	.	none	.	.	PASS	Atlas-SNP
BICC1	80114	hgsc.bcm.edu	hg19	10	60560020	60560020	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	BICC1	NM_001080512	exon13	c.C1792A	p.H598N	GCAAATCACGGGG	.	354.0	159.0	347.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
ANK3	288	hgsc.bcm.edu	hg19	10	61824009	61824009	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	ANK3	NM_020987	exon39	c.C12357T	p.I4119I	TTGATTGATTTCA	.	51.0	23.0	56.0	0.0	.	703	.	.	.	none	.	.	PASS	Atlas-SNP
STOX1	219736	hgsc.bcm.edu	hg19	10	70652348	70652348	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	STOX1	NM_001130159	exon4	c.A667G	p.T223A	TAGGACACAGAGT	.	207.0	82.0	225.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
FAM178A	55719	hgsc.bcm.edu	hg19	10	102719193	102719193	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	C10orf6,NS,carcinoma,0,1	FAM178A	NM_001136123	exon19	c.C3426G	p.D1142E	GAAAGACTTGGTC	.	89.0	42.0	93.0	0.0	.	9	.	.	.	none	.	.	PASS	Atlas-SNP
DPCD	25911	hgsc.bcm.edu	hg19	10	103360566	103360566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	DPCD	NM_015448	exon3	c.C217T	p.P73S	CCAGCGCCCCTAG	.	78.0	25.0	57.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
DNHD1	144132	hgsc.bcm.edu	hg19	11	6589765	6589765	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	DNHD1	NM_144666	exon38	c.T12620A	p.L4207H	TTCGTCTTTGGCT	.	70.0	26.0	50.0	0.0	.	198	.	.	.	none	.	.	PASS	Atlas-SNP
ARNTL	406	hgsc.bcm.edu	hg19	11	13402758	13402758	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	ARNTL	NM_001030272	exon17	c.C1571T	p.T524M	ACATCACGAGTAC	.	49.0	25.0	66.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
HARBI1	283254	hgsc.bcm.edu	hg19	11	46637239	46637239	+	Silent	SNP	T	T	C	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	HARBI1	NM_173811	exon2	c.A549G	p.R183R	TGTCCCTCTAATG	.	104.0	47.0	135.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
SLC3A2	6520	hgsc.bcm.edu	hg19	11	62650443	62650443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	SLC3A2,NS,carcinoma,0,1	SLC3A2	NM_001012662	exon6	c.A968G	p.Q323R	CCACTCAGGTTGA	.	60.0	22.0	66.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
UCP2	7351	hgsc.bcm.edu	hg19	11	73689030	73689030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	UCP2	NM_003355	exon4	c.A238G	p.N80D	GCCCATTGTAGAG	.	92.0	20.0	87.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
ENO2	2026	hgsc.bcm.edu	hg19	12	7031532	7031532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	ENO2	NM_001975	exon11	c.C1202T	p.S401F	GCCGTTCTGAACG	.	133.0	63.0	101.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	hg19	12	49427679	49427679	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	MLL2_ENST00000301067,NS,carcinoma,0,2	MLL2	NM_003482	exon39	c.G10809A	p.Q3603Q	CTGCTGCTGTTGT	.	42.0	4.0	52.0	1.0	.	1173	.	.	.	none	.	.	PASS	Atlas-SNP
DIP2B	57609	hgsc.bcm.edu	hg19	12	51108338	51108338	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	DIP2B	NM_173602	exon23	c.C2810A	p.T937K	CCCATACATGTGT	.	56.0	27.0	68.0	0.0	.	167	.	.	.	none	.	.	PASS	Atlas-SNP
DYRK2	8445	hgsc.bcm.edu	hg19	12	68051341	68051341	+	Silent	SNP	G	G	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	DYRK2	NM_006482	exon3	c.G654T	p.V218V	TCACGTGGCTTAC	.	50.0	25.0	46.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
PTPRB	5787	hgsc.bcm.edu	hg19	12	71016317	71016317	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	PTPRB	NM_001109754	exon3	c.T561A	p.N187K	TGTGGTATTCCTA	.	83.0	34.0	85.0	0.0	.	676	.	.	.	none	.	.	PASS	Atlas-SNP
ACSS3	79611	hgsc.bcm.edu	hg19	12	81627129	81627129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	ACSS3	NM_024560	exon13	c.G1598A	p.G533E	TTCAGGGATATTA	.	96.0	39.0	101.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
SYCP3	50511	hgsc.bcm.edu	hg19	12	102127402	102127402	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	SYCP3	NM_001177949	exon6	c.A404G	p.Q135R	TCCCACTGCTGAA	.	36.0	11.0	47.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
ANAPC7	51434	hgsc.bcm.edu	hg19	12	110825587	110825587	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	ANAPC7	NM_016238	exon5	c.T733A	p.F245I	GCACAAAAGCATA	.	88.0	27.0	91.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
HECTD4	283450	hgsc.bcm.edu	hg19	12	112664523	112664523	+	Silent	SNP	T	T	C	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	.	NM_001109662	exon44	c.A6492G	p.L2164L	ACAAAATAAGCTG	.	36.0	9.0	40.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
PRPF39	55015	hgsc.bcm.edu	hg19	14	45578916	45578916	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	PRPF39	NM_017922	exon8	c.A1109T	p.E370V	CTCATGAACGAGT	.	91.0	47.0	104.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM30B	161291	hgsc.bcm.edu	hg19	14	61747022	61747022	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	TMEM30B	NM_001017970	exon1	c.G844A	p.A282T	GGTAGGCGCCCCG	.	62.0	26.0	54.0	0.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
HSP90AA1	3320	hgsc.bcm.edu	hg19	14	102552294	102552294	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	HSP90AA1	NM_001017963	exon4	c.C696T	p.I232I	CTTGGCGATAGTA	.	152.0	64.0	169.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
INO80	54617	hgsc.bcm.edu	hg19	15	41387985	41387985	+	Silent	SNP	T	T	C	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	INOC1,right_upper_lobe,carcinoma,0,2	INO80	NM_017553	exon3	c.A285G	p.T95T	AGAATATGTGTTT	.	73.0	22.0	73.0	1.0	.	122	.	.	.	none	.	.	PASS	Atlas-SNP
ATP8B4	79895	hgsc.bcm.edu	hg19	15	50168660	50168660	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	ATP8B4	NM_024837	exon25	c.C2842A	p.L948M	AAAGCAGATTCAG	.	61.0	31.0	55.0	0.0	.	173	.	.	.	none	.	.	PASS	Atlas-SNP
MYO9A	4649	hgsc.bcm.edu	hg19	15	72176078	72176078	+	Splice_Site	SNP	C	C	G	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	MYO9A	NM_006901	exon29	c.5256-1G>C	.	TGAGGTCTGTTTA	.	85.0	38.0	102.0	0.0	.	203	.	.	.	none	.	.	PASS	Atlas-SNP
EDC3	80153	hgsc.bcm.edu	hg19	15	74925259	74925259	+	Silent	SNP	G	G	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	EDC3	NM_001142444	exon8	c.C1221T	p.V407V	GTTGATGACCAGG	.	71.0	33.0	64.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
EDC3	80153	hgsc.bcm.edu	hg19	15	74925260	74925260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	EDC3	NM_001142444	exon8	c.T1220C	p.V407A	TTGATGACCAGGT	.	72.0	33.0	63.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
FURIN	5045	hgsc.bcm.edu	hg19	15	91424718	91424718	+	Silent	SNP	C	C	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	FURIN	NM_002569	exon16	c.C1995T	p.H665H	CAGCCACGCCTCC	.	62.0	28.0	66.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
PDIA2	64714	hgsc.bcm.edu	hg19	16	335403	335403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	PDIA2	NM_006849	exon6	c.G887A	p.G296D	TAGCGGGCTTTGG	.	52.0	36.0	45.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
ANKS3	124401	hgsc.bcm.edu	hg19	16	4747050	4747050	+	Silent	SNP	C	C	T	rs369166637		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	ANKS3	NM_133450	exon17	c.G1950A	p.G650G	CTTCTTCCCGTTC	.	71.0	17.0	61.0	0.0	.	44	.	.	.	weak	.	.	PASS	Atlas-SNP
SEPT12	124404	hgsc.bcm.edu	hg19	16	4828111	4828111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	SEPT12	NM_144605	exon9	c.C851A	p.P284H	AGGAGAGGAAATT	.	143.0	39.0	106.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
TNRC6A	27327	hgsc.bcm.edu	hg19	16	24801182	24801182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	TNRC6A,NS,carcinoma,0,1	TNRC6A	NM_014494	exon6	c.A1219G	p.I407V	CAGAGTATTAACT	.	102.0	57.0	71.0	0.0	.	171	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF778	197320	hgsc.bcm.edu	hg19	16	89294957	89294957	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	ZNF778	NM_001201407	exon7	c.A2261T	p.E754V	CTGATGAGAAACC	.	169.0	91.0	163.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
AP2B1	163	hgsc.bcm.edu	hg19	17	33977776	33977776	+	Silent	SNP	T	T	C	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	AP2B1	NM_001282	exon13	c.T1764C	p.I588I	TGGAATTCATCGT	.	138.0	38.0	103.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
GPATCH8	23131	hgsc.bcm.edu	hg19	17	42476884	42476884	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	GPATCH8	NM_001002909	exon8	c.C2561A	p.S854X	GACCTTGAGCGGC	.	71.0	46.0	62.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
WNT9B	7484	hgsc.bcm.edu	hg19	17	44952668	44952668	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	WNT9B	NM_003396	exon3	c.C536T	p.S179F	TGGGGTCCAAGAG	.	230.0	10.0	204.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
ACSF2	80221	hgsc.bcm.edu	hg19	17	48540788	48540788	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	ACSF2	NM_025149	exon8	c.C921A	p.N307K	GCCCAACCCCCTG	.	124.0	33.0	84.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
PSMD12	5718	hgsc.bcm.edu	hg19	17	65343241	65343241	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	PSMD12	NM_002816	exon7	c.A786T	p.K262N	CTGCCATTTTTCA	.	80.0	46.0	62.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
UNC13D	201294	hgsc.bcm.edu	hg19	17	73826558	73826558	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	UNC13D	NM_199242	exon29	c.A2715C	p.E905D	GGTGGTTTCTGCC	.	98.0	52.0	62.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP28	79822	hgsc.bcm.edu	hg19	18	6870695	6870695	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	ARHGAP28	NM_001010000	exon6	c.G441T	p.K147N	ACTTAAGAAATCA	.	237.0	88.0	257.0	0.0	.	181	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGAP28	79822	hgsc.bcm.edu	hg19	18	6870698	6870698	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	ARHGAP28	NM_001010000	exon6	c.A444T	p.K148N	TAAGAAATCAGAG	.	242.0	88.0	253.0	0.0	.	181	.	.	.	none	.	.	PASS	Atlas-SNP
ANKRD30B	374860	hgsc.bcm.edu	hg19	18	14852332	14852332	+	Silent	SNP	A	A	G	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	ANKRD30B	NM_001145029	exon36	c.A4032G	p.L1344L	TCATCTAAACGAG	.	194.0	81.0	178.0	0.0	.	237	.	.	.	none	.	.	PASS	Atlas-SNP
TNFRSF11A	8792	hgsc.bcm.edu	hg19	18	60036643	60036643	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	TNFRSF11A	NM_003839	exon9	c.A1493G	p.D498G	GGGCTGATGGGAG	.	33.0	12.0	47.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
DOT1L	84444	hgsc.bcm.edu	hg19	19	2194549	2194549	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	DOT1L	NM_032482	exon7	c.G624A	p.W208X	GAAATGGTATGGA	.	40.0	18.0	52.0	0.0	.	205	.	.	.	none	.	.	PASS	Atlas-SNP
CHERP	10523	hgsc.bcm.edu	hg19	19	16643886	16643886	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	CHERP	NM_006387	exon4	c.A458T	p.D153V	TTCATGTCTAGCT	.	64.0	30.0	69.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
UNC13A	23025	hgsc.bcm.edu	hg19	19	17766949	17766949	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	UNC13A	NM_001080421	exon10	c.G1026T	p.E342D	CAGCTCCTCCTCA	.	61.0	22.0	39.0	0.0	.	299	.	.	.	none	.	.	PASS	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	hg19	19	39052079	39052079	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	RYR1	NM_000540	exon90	c.G12609C	p.Q4203H	CGCCCAGTGGGAG	.	26.0	8.0	25.0	0.0	.	708	.	.	.	none	.	.	PASS	Atlas-SNP
SCAF1	58506	hgsc.bcm.edu	hg19	19	50155522	50155522	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	SCAF1	NM_021228	exon7	c.A1876T	p.R626W	TCCTCGAGGCGCG	.	43.0	22.0	32.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
CPT1C	126129	hgsc.bcm.edu	hg19	19	50209661	50209661	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	CPT1C	NM_001199752	exon12	c.G1334C	p.G445A	GCCGGGGCCATGA	.	49.0	22.0	52.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
AKT1S1	84335	hgsc.bcm.edu	hg19	19	50374877	50374877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	AKT1S1	NM_032375	exon4	c.C614A	p.P205H	GACACAGGCAGGG	.	35.0	11.0	55.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
PCK1	5105	hgsc.bcm.edu	hg19	20	56139426	56139426	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	PCK1	NM_002591	exon7	c.A1163G	p.N388S	GGAAGAATAAGGA	.	165.0	42.0	143.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
OGFR	11054	hgsc.bcm.edu	hg19	20	61436359	61436359	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	OGFR	NM_007346	exon1	c.G148C	p.A50P	CCGCGGGCGGCGC	.	59.0	15.0	42.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
EEF1A2	1917	hgsc.bcm.edu	hg19	20	62126370	62126370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	EEF1A2	NM_001958	exon4	c.G409A	p.A137T	GCAGGGCATGCTC	.	96.0	62.0	64.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
MYT1	4661	hgsc.bcm.edu	hg19	20	62843443	62843443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	MYT1	NM_004535	exon9	c.G1469A	p.G490D	CTCCTGGCTGCAC	.	59.0	19.0	27.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
UMODL1	89766	hgsc.bcm.edu	hg19	21	43505510	43505510	+	Silent	SNP	T	T	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	UMODL1	NM_173568	exon4	c.T591A	p.L197L	GCGCCTTCTGCAT	.	51.0	28.0	52.0	0.0	.	186	.	.	.	none	.	.	PASS	Atlas-SNP
TMPRSS6	164656	hgsc.bcm.edu	hg19	22	37462120	37462120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	TMPRSS6	NM_153609	exon18	c.A2436G	p.X812W	AGTTCCTCAGGTC	.	75.0	31.0	72.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
FBLN1	2192	hgsc.bcm.edu	hg19	22	45931203	45931203	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	FBLN1	NM_006487	exon8	c.T908A	p.L303Q	ATGCTCTAGGCAA	.	70.0	32.0	78.0	0.0	.	143	.	.	.	none	.	.	PASS	Atlas-SNP
MLC1	23209	hgsc.bcm.edu	hg19	22	50502534	50502534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	MLC1	NM_015166	exon11	c.A988G	p.K330E	TGACCTTGAAGCG	.	72.0	25.0	69.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170058161	170058163	+	In_Frame_Del	DEL	TTA	TTA	-	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	TTA	TTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	LRP2	NM_004525	exon44	c.8428_8430del	p.2810_2810del	.	.	49.0	25.0	57.0	0.0	.	751	.	0.510204	0	none	.	.	PASS	Atlas-Indel,Pindel
RGL2	5863	hgsc.bcm.edu	hg19	6	33262758	33262758	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	RGL2	NM_004761	exon10	c.1275delT	p.G425fs	.	.	130.0	52.0	134.0	0.0	.	58	.	0.4	0	none	.	.	PASS	Atlas-Indel,Pindel
NOTCH4	4855	hgsc.bcm.edu	hg19	6	32168924	32168937	+	Frame_Shift_Del	DEL	AGGGGCTGCGTTTG	AGGGGCTGCGTTTG	-	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	AGGGGCTGCGTTTG	AGGGGCTGCGTTTG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	NOTCH4	NM_004557	exon22	c.4097_4110del	p.1366_1370del	.	.	99.0	24.0	100.0	0.0	.	201	.	0.242424	0	none	.	.	PASS	Atlas-Indel,Pindel
PDLIM4	8572	hgsc.bcm.edu	hg19	5	131606622	131606622	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	PDLIM4,NS,carcinoma,0,1	PDLIM4	NM_001131027	exon4	c.341delC	p.T114fs	.	.	152.0	72.0	155.0	0.0	.	22	.	0.473684	0	none	.	.	PASS	Atlas-Indel,Pindel
GPATCH8	23131	hgsc.bcm.edu	hg19	17	42476886	42476891	+	In_Frame_Del	DEL	GCGGCT	GCGGCT	-	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	GCGGCT	GCGGCT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	GPATCH8	NM_001002909	exon8	c.2555_2560del	p.852_854del	.	.	66.0	35.0	63.0	0.0	.	114	.	0.530303	0	none	.	.	PASS	Atlas-Indel,Pindel
MAP2	4133	hgsc.bcm.edu	hg19	2	210561373	210561373	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	MAP2	NM_002374	exon8	c.4287delG	p.K1429fs	.	.	341.0	151.0	400.0	0.0	.	372	.	0.442815	0	none	.	.	PASS	Atlas-Indel,Pindel
SLC7A9	11136	hgsc.bcm.edu	hg19	19	33350836	33350836	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	SLC7A9	NM_001243036	exon8	c.785delT	p.L262fs	.	.	158.0	56.0	157.0	0.0	.	78	.	0.35443	0	none	.	.	PASS	Atlas-Indel,Pindel
DNAAF2	55172	hgsc.bcm.edu	hg19	14	50100020	50100024	+	Frame_Shift_Del	DEL	GTTTA	GTTTA	-	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	GTTTA	GTTTA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	DNAAF2	NM_018139	exon1	c.1845_1849del	p.615_617del	.	.	98.0	40.0	131.0	0.0	.	47	.	0.408163	0	none	.	.	PASS	Atlas-Indel,Pindel
PDK2	5164	hgsc.bcm.edu	hg19	17	48184183	48184187	+	Frame_Shift_Del	DEL	CCCAG	CCCAG	-	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	CCCAG	CCCAG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	PDK2	NM_002611	exon5	c.542_546del	p.181_182del	.	.	172.0	40.0	119.0	0.0	.	41	.	0.232558	0	none	.	.	PASS	Atlas-Indel,Pindel
PNKD	25953	hgsc.bcm.edu	hg19	2	219205495	219205496	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	PNKD	NM_015488	exon5	c.510_511insG	p.C170fs	.	.	61.0	24.0	66.0	0.0	.	58	.	0.393443	0	none	.	.	PASS	Atlas-Indel,Pindel
PXDNL	137902	hgsc.bcm.edu	hg19	8	52412274	52412274	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	PXDNL	NM_144651	exon5	c.438delG	p.L146fs	.	.	68.0	39.0	57.0	0.0	.	414	.	0.573529	0	none	.	.	PASS	Atlas-Indel,Pindel
ELN	2006	hgsc.bcm.edu	hg19	7	73470631	73470631	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	ELN	NM_001081753	exon20	c.1195delA	p.I399fs	.	.	142.0	85.0	105.0	0.0	.	81	.	0.598592	0	none	.	.	PASS	Atlas-Indel,Pindel
BTAF1	9044	hgsc.bcm.edu	hg19	10	93722390	93722390	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-2Z-A9JS-01A-21D-A42J-10	TCGA-2Z-A9JS-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	db0ca5a7-1470-4807-90f7-ef557c434e28	518e7145-530f-4cb8-a90b-bcf9ecab7b98	.	BTAF1	NM_003972	exon12	c.1358delC	p.S453fs	.	.	349.0	87.0	397.0	0.0	.	148	.	0.249	.	none	.	.	PASS	Pindel