Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm PLEKHG5 57449 hgsc.bcm.edu hg19 1 6529206 6529206 + Silent SNP C C T novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 PLEKHG5_ENST00000377748,colon,carcinoma,0,1 PLEKHG5 NM_001265592 exon20 c.G2382A p.E794E CTCCTCCTCTTCC . 28.0 5.0 30.0 1.0 . 66 . . . none . . PASS Atlas-SNP GBP2 2634 hgsc.bcm.edu hg19 1 89587538 89587538 + Missense_Mutation SNP C C G novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . GBP2 NM_004120 exon2 c.G112C p.V38L CCACCACAGGCTG . 77.0 60.0 83.0 0.0 . 58 . . . none . . PASS Atlas-SNP HMCN1 83872 hgsc.bcm.edu hg19 1 186072734 186072734 + Silent SNP C C G novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . HMCN1 NM_031935 exon69 c.C10704G p.P3568P CCGGCCCCTTCCA . 133.0 66.0 103.0 0.0 . 797 . . . none . . PASS Atlas-SNP KCNT2 343450 hgsc.bcm.edu hg19 1 196448320 196448320 + Missense_Mutation SNP G G C novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 KCNT2,NS,carcinoma,0,1 KCNT2 NM_198503 exon5 c.C373G p.L125V AACTAAGATAACC . 549.0 196.0 458.0 0.0 . 243 . . . none . . PASS Atlas-SNP BPNT1 10380 hgsc.bcm.edu hg19 1 220232335 220232335 + Splice_Site SNP C C G novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . BPNT1 NM_006085 exon10 c.779-1G>C . ACTTGCCTATAGA . 70.0 15.0 42.0 0.0 . 29 . . . none . . PASS Atlas-SNP SETD2 29072 hgsc.bcm.edu hg19 3 47079260 47079260 + Nonsense_Mutation SNP G G A novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 SETD2_ENST00000409792,NS,carcinoma,0,2 SETD2 NM_014159 exon18 c.C7246T p.Q2416X CCCACTGAGTCTG . 31.0 18.0 63.0 0.0 . 721 . . . none . . PASS Atlas-SNP COL6A6 131873 hgsc.bcm.edu hg19 3 130290142 130290142 + Missense_Mutation SNP G G A novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . COL6A6 NM_001102608 exon6 c.G2882A p.G961E TGGCAGGATCAAG . 177.0 63.0 146.0 0.0 . 497 . . . none . . PASS Atlas-SNP PIK3CA 5290 hgsc.bcm.edu hg19 3 178916725 178916725 + Missense_Mutation SNP C C T novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 PIK3CA_ENST00000263967,caecum,carcinoma,0,17 PIK3CA NM_006218 exon2 c.C112T p.R38C TGCCTCCGTGAGG . 265.0 137.0 158.0 0.0 . 8460 . . . none . . PASS Atlas-SNP PIK3CA 5290 hgsc.bcm.edu hg19 3 178936082 178936082 + Missense_Mutation SNP G G A rs121913273 TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 PIK3CA_ENST00000263967,NS,carcinoma,0,2 PIK3CA NM_006218 exon10 c.G1624A p.E542K CTCTCTGAAATCA . 542.0 259.0 360.0 1.0 . 8460 . . . weak . . PASS Atlas-SNP ADD1 118 hgsc.bcm.edu hg19 4 2930015 2930015 + Missense_Mutation SNP A A G novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . ADD1 NM_014189 exon15 c.A2072G p.K691R TAGAGAAGGAGGA . 102.0 47.0 178.0 0.0 . 56 . . . none . . PASS Atlas-SNP PKD2 5311 hgsc.bcm.edu hg19 4 88929118 88929118 + Missense_Mutation SNP C C T novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . PKD2 NM_000297 exon1 c.C233T p.P78L CTCCTCCGCTCTC . 245.0 140.0 333.0 0.0 . 82 . . . none . . PASS Atlas-SNP CASP6 839 hgsc.bcm.edu hg19 4 110624544 110624544 + Missense_Mutation SNP G G C rs376919922 alternate_allele TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . CASP6 NM_001226 exon1 c.C8G p.S3W GAGGCCGAGCTCA . 227.0 135.0 251.0 0.0 . 25 . . . alt . . PASS Atlas-SNP GIN1 54826 hgsc.bcm.edu hg19 5 102423700 102423700 + Missense_Mutation SNP T T C novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . GIN1 NM_017676 exon8 c.A1471G p.T491A TTTTCGTATTTCT . 74.0 27.0 71.0 0.0 . 53 . . . none . . PASS Atlas-SNP ANKS1A 23294 hgsc.bcm.edu hg19 6 35047434 35047434 + Missense_Mutation SNP G G A novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . ANKS1A NM_015245 exon15 c.G2425A p.E809K GAGCTAGAGCTCG . 83.0 36.0 64.0 0.0 . 123 . . . none . . PASS Atlas-SNP DNAH8 1769 hgsc.bcm.edu hg19 6 38919137 38919137 + Missense_Mutation SNP A A T novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . DNAH8 NM_001206927 exon82 c.A12292T p.I4098F AAGTATATTGCAG . 131.0 55.0 120.0 0.0 . 1239 . . . none . . PASS Atlas-SNP PKHD1 5314 hgsc.bcm.edu hg19 6 51524419 51524419 + Missense_Mutation SNP T T A novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . PKHD1 NM_138694 exon61 c.A10505T p.E3502V TGGAGCTCATGGT . 138.0 58.0 107.0 0.0 . 927 . . . none . . PASS Atlas-SNP ZNF92 168374 hgsc.bcm.edu hg19 7 64863907 64863907 + Missense_Mutation SNP T T A novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . ZNF92 NM_152626 exon4 c.T880A p.F294I AAGGCCTTTAACC . 103.0 46.0 78.0 0.0 . 68 . . . none . . PASS Atlas-SNP CYP51A1 1595 hgsc.bcm.edu hg19 7 91755569 91755569 + Missense_Mutation SNP G G T novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . CYP51A1 NM_000786 exon5 c.C768A p.F256L ATACCTGAAACTA . 97.0 29.0 60.0 0.0 . 30 . . . none . . PASS Atlas-SNP TRIM4 89122 hgsc.bcm.edu hg19 7 99516791 99516791 + Silent SNP G G A novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . TRIM4 NM_033017 exon1 c.C234T p.R78R GCCCAGGCGCCGG . 57.0 24.0 45.0 0.0 . 33 . . . none . . PASS Atlas-SNP PARP12 64761 hgsc.bcm.edu hg19 7 139762578 139762578 + Missense_Mutation SNP G G C rs201640031 TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . PARP12 NM_022750 exon1 c.C70G p.P24A GCTCGGGCAACTC . 5.0 4.0 0.0 0.0 . 59 . . . weak . . PASS Atlas-SNP RNF19A 25897 hgsc.bcm.edu hg19 8 101300044 101300044 + Missense_Mutation SNP G G C novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . RNF19A NM_015435 exon3 c.C359G p.T120S ATGGAAGTTAATC . 85.0 29.0 63.0 0.0 . 67 . . . none . . PASS Atlas-SNP ZC3H3 23144 hgsc.bcm.edu hg19 8 144522390 144522390 + Missense_Mutation SNP G G T novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 ZC3H3,NS,malignant_melanoma,0,1 ZC3H3 NM_015117 exon11 c.C2636A p.S879Y GATGAGGAGGAGG . 109.0 0.0 82.0 0.0 . 75 . . . none . . PASS Atlas-SNP ZNF16 7564 hgsc.bcm.edu hg19 8 146157588 146157588 + Silent SNP G G A novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . ZNF16 NM_006958 exon3 c.C585T p.D195D AGTTAGGTCCACA . 87.0 37.0 76.0 0.0 . 80 . . . none . . PASS Atlas-SNP C9orf172 389813 hgsc.bcm.edu hg19 9 139741257 139741257 + Silent SNP C C T novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . C9orf172 NM_001080482 exon1 c.C2391T p.R797R CGCGCGCGAGCTG . 33.0 12.0 49.0 0.0 . 23 . . . none . . PASS Atlas-SNP IDE 3416 hgsc.bcm.edu hg19 10 94250353 94250353 + Splice_Site SNP C C T novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 IDE,colon,carcinoma,0,1 IDE NM_004969 exon13 c.1431-1G>A . GCAACCCTAGAGA . 62.0 25.0 51.0 0.0 . 77 . . . none . . PASS Atlas-SNP CNNM2 54805 hgsc.bcm.edu hg19 10 104678741 104678741 + Silent SNP C C T novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . CNNM2 NM_199076 exon1 c.C504T p.R168R CCGCCGCACCTCG . 160.0 59.0 128.0 0.0 . 119 . . . none . . PASS Atlas-SNP PDZD8 118987 hgsc.bcm.edu hg19 10 119044221 119044221 + Missense_Mutation SNP C C T novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . PDZD8 NM_173791 exon5 c.G2023A p.D675N GACGGTCGTCCGA . 142.0 48.0 110.0 0.0 . 85 . . . none . . PASS Atlas-SNP PRPF19 27339 hgsc.bcm.edu hg19 11 60666069 60666069 + Missense_Mutation SNP C C T novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . PRPF19 NM_014502 exon13 c.G1084A p.G362R TGAGTCCGTCAGG . 91.0 4.0 91.0 0.0 . 62 . . . none . . PASS Atlas-SNP SART1 9092 hgsc.bcm.edu hg19 11 65744127 65744127 + Missense_Mutation SNP G G C novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . SART1 NM_005146 exon14 c.G1747C p.D583H CCCCAGGACTTTG . 104.0 34.0 86.0 0.0 . 41 . . . none . . PASS Atlas-SNP LRFN4 78999 hgsc.bcm.edu hg19 11 66627359 66627359 + Missense_Mutation SNP C C G novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . LRFN4 NM_024036 exon2 c.C1601G p.T534S TCTTCACTGTGGC . 98.0 39.0 66.0 0.0 . 25 . . . none . . PASS Atlas-SNP LRRC32 2615 hgsc.bcm.edu hg19 11 76372150 76372150 + Missense_Mutation SNP G G A novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 LRRC32,brain,glioma,0,2 LRRC32 NM_005512 exon3 c.C487T p.R163C TGAGGCGAGTCAG . 62.0 11.0 38.0 0.0 . 74 . . . none . . PASS Atlas-SNP MYO7A 4647 hgsc.bcm.edu hg19 11 76872079 76872079 + Missense_Mutation SNP C C T novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . MYO7A NM_001127179 exon12 c.C1261T p.P421S TACAAGCCTCCCT . 120.0 47.0 88.0 0.0 . 164 . . . none . . PASS Atlas-SNP CLEC1A 51267 hgsc.bcm.edu hg19 12 10251426 10251426 + Missense_Mutation SNP A A C novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . CLEC1A NM_016511 exon1 c.T96G p.H32Q CTCTGGATGCCGA . 124.0 32.0 104.0 0.0 . 48 . . . none . . PASS Atlas-SNP ADAMTS20 80070 hgsc.bcm.edu hg19 12 43896178 43896178 + Missense_Mutation SNP A A C novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . ADAMTS20 NM_025003 exon4 c.T644G p.F215C GTATGAAAGGGTA . 82.0 24.0 56.0 0.0 . 635 . . . none . . PASS Atlas-SNP PPP1R12A 4659 hgsc.bcm.edu hg19 12 80182551 80182551 + Silent SNP A A G novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . PPP1R12A NM_002480 exon21 c.T2679C p.S893S TGTAGAACTGGTT . 69.0 27.0 45.0 0.0 . 76 . . . none . . PASS Atlas-SNP MYCBP2 23077 hgsc.bcm.edu hg19 13 77742691 77742691 + Missense_Mutation SNP T T C novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . MYCBP2 NM_015057 exon40 c.A5986G p.N1996D ACTGATTAGGGTT . 105.0 40.0 94.0 0.0 . 1029 . . . none . . PASS Atlas-SNP ADCY4 196883 hgsc.bcm.edu hg19 14 24787720 24787720 + Silent SNP G G T novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . ADCY4 NM_001198592 exon26 c.C3136A p.R1046R CACCCCGGCTGTA . 95.0 4.0 78.0 0.0 . 86 . . . none . . PASS Atlas-SNP NIN 51199 hgsc.bcm.edu hg19 14 51208398 51208398 + Silent SNP G G T rs142213280 alternate_allele TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . NIN NM_020921 exon25 c.C5350A p.R1784R TCATCCGGGACAT . 80.0 29.0 56.0 0.0 . 475 . . . alt G|1.000;A|0.000 . PASS Atlas-SNP PLD4 122618 hgsc.bcm.edu hg19 14 105395668 105395668 + Nonsense_Mutation SNP C C T novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . PLD4 NM_138790 exon5 c.C493T p.Q165X AAGCTGCAGCAGC . 171.0 67.0 123.0 0.0 . 46 . . . none . . PASS Atlas-SNP TRPM7 54822 hgsc.bcm.edu hg19 15 50904942 50904942 + Missense_Mutation SNP G G A novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . TRPM7 NM_017672 exon16 c.C1855T p.P619S GATAAGGAAAGCG . 79.0 30.0 59.0 0.0 . 145 . . . none . . PASS Atlas-SNP THSD4 79875 hgsc.bcm.edu hg19 15 72037466 72037466 + Missense_Mutation SNP G G A rs374464107 TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . THSD4 NM_024817 exon11 c.G1928A p.R643H TTTTCCGCTGTGT . 64.0 18.0 52.0 0.0 . 75 . . . weak . . PASS Atlas-SNP KIAA0556 23247 hgsc.bcm.edu hg19 16 27751558 27751558 + Missense_Mutation SNP C C T novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . KIAA0556 NM_015202 exon15 c.C1940T p.A647V AGATGGCTGGTGC . 106.0 6.0 98.0 0.0 . 348 . . . none . . PASS Atlas-SNP CTCF 10664 hgsc.bcm.edu hg19 16 67645250 67645250 + Missense_Mutation SNP A A G novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . CTCF NM_006565 exon3 c.A515G p.N172S GGGCCAATGGAGA . 256.0 105.0 204.0 0.0 . 193 . . . none . . PASS Atlas-SNP TP53 7157 hgsc.bcm.edu hg19 17 7579355 7579355 + Missense_Mutation SNP A A G novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 TP53_ENST00000455263,NS,carcinoma,0,38 TP53 NM_000546 exon4 c.T332C p.L111P AAGCCCAGACGGA . 123.0 74.0 148.0 0.0 . 33396 . . . none . . PASS Atlas-SNP FBXO47 494188 hgsc.bcm.edu hg19 17 37099134 37099134 + Missense_Mutation SNP A A T novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . FBXO47 NM_001008777 exon9 c.T980A p.L327H ATTAGGAGACGTG . 103.0 21.0 78.0 0.0 . 34 . . . none . . PASS Atlas-SNP RAB40B 10966 hgsc.bcm.edu hg19 17 80656364 80656364 + Missense_Mutation SNP C C G novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . RAB40B NM_006822 exon1 c.G109C p.G37R CCGCGCCATCCTG . 92.0 22.0 86.0 0.0 . 24 . . . none . . PASS Atlas-SNP LAMA3 3909 hgsc.bcm.edu hg19 18 21530086 21530086 + Missense_Mutation SNP C C T novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . LAMA3 NM_198129 exon72 c.C9605T p.P3202L GTCAGCCCGGGAA . 32.0 18.0 72.0 0.0 . 397 . . . none . . PASS Atlas-SNP CALR 811 hgsc.bcm.edu hg19 19 13050917 13050917 + Missense_Mutation SNP T T C novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . CALR NM_004343 exon4 c.T448C p.Y150H TTCAACTACAAGG . 155.0 10.0 105.0 0.0 . 31 . . . none . . PASS Atlas-SNP GADD45GIP1 90480 hgsc.bcm.edu hg19 19 13065098 13065098 + Missense_Mutation SNP T T G novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . GADD45GIP1 NM_052850 exon2 c.A593C p.K198T TCCTTCTTCCGTT . 113.0 10.0 92.0 0.0 . 11 . . . none . . PASS Atlas-SNP PGLYRP2 114770 hgsc.bcm.edu hg19 19 15586537 15586537 + Missense_Mutation SNP C C A rs145689498 alternate_allele TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . PGLYRP2 NM_052890 exon2 c.G944T p.R315L TTGCTGCGGAACC . 74.0 36.0 67.0 0.0 . 116 . . . alt C|1.000;T|0.000 . PASS Atlas-SNP PRX 57716 hgsc.bcm.edu hg19 19 40900916 40900916 + Missense_Mutation SNP C C A novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . PRX NM_181882 exon7 c.G3343T p.A1115S CCACAGCCCCCTC . 35.0 10.0 31.0 0.0 . 151 . . . none . . PASS Atlas-SNP NLRP7 199713 hgsc.bcm.edu hg19 19 55450484 55450484 + Missense_Mutation SNP A A T novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . NLRP7 NM_001127255 exon4 c.T1703A p.L568Q TCCTTCAGGTCGG . 82.0 14.0 53.0 0.0 . 411 . . . none . . PASS Atlas-SNP ZNF583 147949 hgsc.bcm.edu hg19 19 56935542 56935542 + Silent SNP A A T novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . ZNF583 NM_001159861 exon5 c.A1515T p.G505G TAGTGGATCTCTT . 55.0 24.0 43.0 0.0 . 83 . . . none . . PASS Atlas-SNP ADAM33 80332 hgsc.bcm.edu hg19 20 3652297 3652297 + Silent SNP G G C novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . ADAM33 NM_025220 exon16 c.C1836G p.L612L ACTGGGGAGTGCC . 47.0 19.0 44.0 0.0 . 76 . . . none . . PASS Atlas-SNP ESF1 51575 hgsc.bcm.edu hg19 20 13763687 13763687 + Missense_Mutation SNP T T A novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . ESF1 NM_001276380 exon2 c.A100T p.I34F TGTCAATTTTGAC . 93.0 35.0 62.0 0.0 . 77 . . . none . . PASS Atlas-SNP TUBB1 81027 hgsc.bcm.edu hg19 20 57599619 57599619 + Silent SNP T T C novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . TUBB1 NM_030773 exon4 c.T1137C p.N379N CTTTAATAGGGTC . 70.0 25.0 44.0 0.0 . 42 . . . none . . PASS Atlas-SNP TCP10L 140290 hgsc.bcm.edu hg19 21 33956569 33956569 + Missense_Mutation SNP G G A novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . TCP10L NM_144659 exon2 c.C46T p.H16Y CTGGGTGGGTGCC . 72.0 21.0 58.0 0.0 . 24 . . . none . . PASS Atlas-SNP COL6A2 1292 hgsc.bcm.edu hg19 21 47546102 47546102 + Silent SNP C C T novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . COL6A2 NM_058175 exon26 c.C2373T p.D791D CTCCGACCTGGTC . 34.0 10.0 26.0 0.0 . 351 . . . none . . PASS Atlas-SNP EP300 2033 hgsc.bcm.edu hg19 22 41527606 41527606 + Silent SNP T T C novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . EP300 NM_001429 exon6 c.T1497C p.S499S GCAGTCTCCCCAA . 97.0 16.0 78.0 0.0 . 367 . . . none . . PASS Atlas-SNP MOV10L1 54456 hgsc.bcm.edu hg19 22 50555698 50555698 + Nonsense_Mutation SNP G G T novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 MOV10L1,rectum,carcinoma,0,1 MOV10L1 NM_018995 exon9 c.G1372T p.E458X GCGCGCGAACCAT . 110.0 36.0 113.0 2.0 . 238 . . . none . . PASS Atlas-SNP FANCB 2187 hgsc.bcm.edu hg19 X 14862799 14862799 + Missense_Mutation SNP G G A novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . FANCB NM_152633 exon8 c.C1991T p.S664L CCGGGTGATGTGA . 118.0 89.0 119.0 0.0 . 78 . . . none . . PASS Atlas-SNP GPKOW 27238 hgsc.bcm.edu hg19 X 48979991 48979991 + Missense_Mutation SNP C C A novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . GPKOW NM_015698 exon1 c.G82T p.A28S TCCGTGCGGACGT . 222.0 172.0 169.0 0.0 . 38 . . . none . . PASS Atlas-SNP SMARCA1 6594 hgsc.bcm.edu hg19 X 128582334 128582334 + Missense_Mutation SNP C C G novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . SMARCA1 NM_003069 exon24 c.G3117C p.K1039N CCGTTTCTTCTTT . 66.0 46.0 54.0 0.0 . 126 . . . none . . PASS Atlas-SNP COX1 5742 hgsc.bcm.edu hg19 MT 7236 7236 + Missense_Mutation SNP G G A novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . . ENST00000361624 exon1 c.G1333A p.D445N TACCCCGATGCAT . 190.0 9.0 8.0 0.0 . . . . . none . . PASS Atlas-SNP NEFH 4744 hgsc.bcm.edu hg19 22 29885591 29885592 + In_Frame_Ins INS - - CCTGAGAAGGCCAAGTCC novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 .,2 NEFH NM_021076 exon4 c.1962_1963insCCTGAGAAGGCCAAGTCC p.S654delinsSPEKAKS . . 270.0 55.0 179.0 0.0 . 178 . 0.203704 0 none . . PASS Atlas-INDEL DENND5A 23258 hgsc.bcm.edu hg19 11 9187516 9187517 + Splice_Site INS - - AGAA novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . DENND5A NM_001243254 exon12 c.2152-2->TTCT . . . 80.0 20.0 61.0 0.0 . 84 . 0.25 0 none . . PASS Atlas-Indel,Pindel SECISBP2 79048 hgsc.bcm.edu hg19 9 91961869 91961869 + Frame_Shift_Del DEL C C - novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . SECISBP2 NM_024077 exon11 c.1507delA p.T503fs . . 95.0 27.0 63.0 0.0 . 64 . 0.284211 0 none . . PASS Atlas-Indel,Pindel FKBP11 51303 hgsc.bcm.edu hg19 12 49317595 49317596 + Frame_Shift_Del DEL CA CA - novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 CA CA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . FKBP11 NM_016594 exon5 c.358_359del p.120_120del . . 107.0 41.0 103.0 0.0 . 12 . 0.383178 0 none . . PASS Atlas-Indel,Pindel NLGN1 22871 hgsc.bcm.edu hg19 3 173997169 173997169 + Frame_Shift_Del DEL T T - novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 NLGN1,NS,carcinoma,0,1 NLGN1 NM_014932 exon6 c.1377delG p.L459fs . . 180.0 50.0 153.0 0.0 . 209 . 0.277778 0 none . . PASS Atlas-Indel,Pindel BTG2 7832 hgsc.bcm.edu hg19 1 203276494 203276495 + Frame_Shift_Ins INS - - A novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . BTG2 NM_006763 exon2 c.405_406insA p.L135fs . . 85.0 22.0 55.0 0.0 . 16 . 0.258824 0 none . . PASS Atlas-Indel,Pindel TCF25 22980 hgsc.bcm.edu hg19 16 89940088 89940089 + Frame_Shift_Ins INS - - C novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . TCF25 NM_014972 exon1 c.13_14insC p.A5fs . . 93.0 36.0 88.0 0.0 . 61 . 0.387097 0 none . . PASS Atlas-Indel,Pindel DUOX2 50506 hgsc.bcm.edu hg19 15 45402911 45402913 + Splice_Site DEL GAG GAG - novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 GAG GAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . DUOX2 . . . . . . 225.0 63.0 180.0 0.0 . 137 . 0.28 0 none . . PASS Atlas-Indel,Pindel SLC2A13 114134 hgsc.bcm.edu hg19 12 40422123 40422134 + In_Frame_Del DEL TCCTCTTCAATG TCCTCTTCAATG - novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 TCCTCTTCAATG TCCTCTTCAATG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . SLC2A13 NM_052885 exon3 c.895_906del p.299_302del . . 46.0 12.0 67.0 0.0 . 91 . 0.26087 0 none . . PASS Atlas-Indel,Pindel PBRM1 55193 hgsc.bcm.edu hg19 3 52613184 52613184 + Frame_Shift_Del DEL T T - novel TCGA-5P-A9K3-01A-11D-A42J-10 TCGA-5P-A9K3-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 84a1aab7-7e50-4015-accb-e32579b2fc62 fe756f10-d087-48bf-984d-e9ba64bab839 . PBRM1 NM_018313 exon22 c.3345delT p.N1115fs . . 82.0 61.0 75.0 0.0 . 1252 . 0.743902 0 none . . PASS Atlas-Indel,Pindel