Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm PRDM2 7799 hgsc.bcm.edu hg19 1 14105118 14105118 + Missense_Mutation SNP G G T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . PRDM2 NM_015866 exon8 c.G828T p.E276D GGAGGAGGATGAA . 139.0 9.0 135.0 0.0 . 147 . . . none . . PASS Atlas-SNP PRDM2 7799 hgsc.bcm.edu hg19 1 14105121 14105121 + Missense_Mutation SNP T T A rs199679022 bycluster;by1000genomes;alternate_allele TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 PRDM2,colon,carcinoma,0,1 PRDM2 NM_015866 exon8 c.T831A p.D277E GGAGGATGAAGAA . 139.0 14.0 134.0 0.0 . 147 . . . alt T|0.999;G|0.001 . PASS Atlas-SNP SZT2 23334 hgsc.bcm.edu hg19 1 43896951 43896951 + Missense_Mutation SNP C C A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . SZT2 NM_015284 exon33 c.C4761A p.S1587R TGAAAGCAGTGCT . 114.0 32.0 156.0 0.0 . 383 . . . none . . PASS Atlas-SNP DIO1 1733 hgsc.bcm.edu hg19 1 54371929 54371929 + Missense_Mutation SNP A A G novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . DIO1 NM_001039715 exon2 c.A499G p.R167G CCTGAGAGGCTCT . 143.0 6.0 146.0 0.0 . 66 . . . none . . PASS Atlas-SNP PLA2G4A 5321 hgsc.bcm.edu hg19 1 186880403 186880403 + Missense_Mutation SNP G G A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . PLA2G4A NM_024420 exon7 c.G440A p.S147N GATTTAGTATGGC . 94.0 20.0 82.0 0.0 . 125 . . . none . . PASS Atlas-SNP PPP2R5A 5525 hgsc.bcm.edu hg19 1 212534084 212534084 + Missense_Mutation SNP G G C novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . PPP2R5A NM_006243 exon13 c.G1433C p.S478T TGCACAGTATTCT . 616.0 68.0 612.0 0.0 . 48 . . . none . . PASS Atlas-SNP PGBD2 267002 hgsc.bcm.edu hg19 1 249210858 249210858 + Missense_Mutation SNP G G T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . PGBD2 NM_170725 exon3 c.G75T p.E25D GCTTGAGGTTCTG . 101.0 5.0 91.0 0.0 . 103 . . . none . . PASS Atlas-SNP ZDBF2 57683 hgsc.bcm.edu hg19 2 207170563 207170563 + Missense_Mutation SNP T T G novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . ZDBF2 NM_020923 exon5 c.T1311G p.D437E TACTGATGTACAG . 92.0 7.0 87.0 0.0 . 531 . . . none . . PASS Atlas-SNP UNC80 285175 hgsc.bcm.edu hg19 2 210752974 210752974 + Silent SNP G G A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . UNC80 NM_032504 exon26 c.G4272A p.E1424E AGTCGAGGAGAAG . 197.0 61.0 205.0 0.0 . 280 . . . none . . PASS Atlas-SNP FAM134A 79137 hgsc.bcm.edu hg19 2 220044862 220044862 + Missense_Mutation SNP C C G novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . FAM134A NM_024293 exon4 c.C450G p.H150Q GCCGCACCTGCTG . 145.0 49.0 145.0 0.0 . 34 . . . none . . PASS Atlas-SNP CUL3 8452 hgsc.bcm.edu hg19 2 225370771 225370771 + Missense_Mutation SNP T T A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . CUL3 NM_001257198 exon8 c.A1126T p.I376F CCGCAATAGTTTG . 274.0 89.0 318.0 1.0 . 96 . . . none . . PASS Atlas-SNP TRIP12 9320 hgsc.bcm.edu hg19 2 230656640 230656640 + Missense_Mutation SNP C C T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . TRIP12 NM_004238 exon28 c.G4132A p.D1378N CATCATCTGTGGA . 163.0 51.0 205.0 0.0 . 207 . . . none . . PASS Atlas-SNP TRIP12 9320 hgsc.bcm.edu hg19 2 230656641 230656641 + Silent SNP T T A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . TRIP12 NM_004238 exon28 c.A4131T p.T1377T ATCATCTGTGGAT . 161.0 49.0 206.0 0.0 . 207 . . . none . . PASS Atlas-SNP ITPR1 3708 hgsc.bcm.edu hg19 3 4704871 4704871 + Missense_Mutation SNP A A G novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . ITPR1 NM_001099952 exon16 c.A1535G p.E512G TGAGAGAACAGAA . 107.0 11.0 102.0 0.0 . 659 . . . none . . PASS Atlas-SNP CAND2 23066 hgsc.bcm.edu hg19 3 12856913 12856913 + Missense_Mutation SNP T T A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . CAND2 NM_001162499 exon8 c.T1280A p.L427H GCAACCTCCATAT . 418.0 137.0 419.0 0.0 . 138 . . . none . . PASS Atlas-SNP CCR9 10803 hgsc.bcm.edu hg19 3 45943247 45943247 + Silent SNP A A C novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . CCR9 NM_031200 exon3 c.A967C p.R323R GGTGAGAGATTCC . 91.0 32.0 101.0 0.0 . 45 . . . none . . PASS Atlas-SNP HYAL2 8692 hgsc.bcm.edu hg19 3 50357467 50357467 + Missense_Mutation SNP G G A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . HYAL2 NM_033158 exon3 c.C454T p.R152C ACCGGCGATACAC . 59.0 19.0 52.0 0.0 . 31 . . . none . . PASS Atlas-SNP GPR128 84873 hgsc.bcm.edu hg19 3 100354648 100354648 + Missense_Mutation SNP C C G novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . GPR128 NM_032787 exon5 c.C575G p.T192S TCAACACTTCCAG . 178.0 71.0 182.0 0.0 . 126 . . . none . . PASS Atlas-SNP KIAA1524 57650 hgsc.bcm.edu hg19 3 108271221 108271221 + Splice_Site SNP C C A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . KIAA1524 NM_020890 exon21 c.2408-1G>T . GCAAATCTTAAAA . 34.0 15.0 39.0 0.0 . 82 . . . none . . PASS Atlas-SNP C3orf30 152405 hgsc.bcm.edu hg19 3 118865256 118865256 + Missense_Mutation SNP G G C novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . C3orf30 NM_152539 exon1 c.G220C p.G74R ACCAACGGAGTAG . 162.0 70.0 174.0 0.0 . 64 . . . none . . PASS Atlas-SNP ITGB5 3693 hgsc.bcm.edu hg19 3 124527967 124527967 + Missense_Mutation SNP G G T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . ITGB5 NM_002213 exon9 c.C1165A p.Q389K CAGGCTGATCCCA . 117.0 25.0 109.0 0.0 . 66 . . . none . . PASS Atlas-SNP CRMP1 1400 hgsc.bcm.edu hg19 4 5838634 5838634 + Splice_Site SNP C C A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . CRMP1 NM_001014809 exon11 c.1311-1G>T . TCCCCACTGGCAA . 47.0 7.0 43.0 0.0 . 118 . . . none . . PASS Atlas-SNP LRBA 987 hgsc.bcm.edu hg19 4 151935618 151935618 + Silent SNP T T C novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . LRBA NM_006726 exon2 c.A177G p.E59E GGATACTTCTCCA . 152.0 40.0 183.0 0.0 . 253 . . . none . . PASS Atlas-SNP CCDC110 256309 hgsc.bcm.edu hg19 4 186379896 186379896 + Missense_Mutation SNP C C G novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . CCDC110 NM_152775 exon6 c.G1845C p.Q615H TTTTAGCTGGATT . 64.0 15.0 73.0 0.0 . 78 . . . none . . PASS Atlas-SNP PCDHA7 56141 hgsc.bcm.edu hg19 5 140215838 140215838 + Missense_Mutation SNP G G A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 PCDHA7_ENST00000525929,colon,carcinoma,0,2 PCDHA7 NM_031852 exon1 c.G1870A p.V624M TTCCGCGTGGGGC . 97.0 34.0 97.0 0.0 . 367 . . . none . . PASS Atlas-SNP PCDH12 51294 hgsc.bcm.edu hg19 5 141331117 141331117 + Missense_Mutation SNP T T A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . PCDH12 NM_016580 exon2 c.A2919T p.Q973H CTGGAATTGGCCC . 104.0 22.0 82.0 0.0 . 133 . . . none . . PASS Atlas-SNP RANBP17 64901 hgsc.bcm.edu hg19 5 170289055 170289055 + Silent SNP G G A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . RANBP17 NM_022897 exon1 c.G18A p.Q6Q CTTCCAGGTCAGT . 6.0 5.0 5.0 0.0 . 108 . . . none . . PASS Atlas-SNP KIAA0319 9856 hgsc.bcm.edu hg19 6 24551749 24551749 + Missense_Mutation SNP T T G novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . KIAA0319 NM_001168375 exon20 c.A2953C p.K985Q TCCTTTTTTGTCT . 63.0 22.0 75.0 0.0 . 117 . . . none . . PASS Atlas-SNP FBXL4 26235 hgsc.bcm.edu hg19 6 99374476 99374476 + Missense_Mutation SNP G G A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . FBXL4 NM_012160 exon3 c.C389T p.T130I TCAAAAGTAAGTT . 123.0 41.0 161.0 0.0 . 54 . . . none . . PASS Atlas-SNP SESN1 27244 hgsc.bcm.edu hg19 6 109319902 109319902 + Silent SNP T T G novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . SESN1 NM_014454 exon5 c.A786C p.V262V TAAAACTACTGCA . 126.0 31.0 133.0 0.0 . 29 . . . none . . PASS Atlas-SNP TUBE1 51175 hgsc.bcm.edu hg19 6 112392751 112392751 + Missense_Mutation SNP T T C novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . TUBE1 NM_016262 exon12 c.A1292G p.Q431R TCAACTTGTAGAT . 59.0 13.0 78.0 0.0 . 49 . . . none . . PASS Atlas-SNP TSPYL4 23270 hgsc.bcm.edu hg19 6 116574508 116574508 + Missense_Mutation SNP C C A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . TSPYL4 NM_021648 exon1 c.G664T p.D222Y CCCTGTCAGCCTG . 73.0 24.0 74.0 0.0 . 18 . . . none . . PASS Atlas-SNP SHPRH 257218 hgsc.bcm.edu hg19 6 146262786 146262786 + Silent SNP A A T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . SHPRH NM_173082 exon10 c.T2463A p.A821A CATCTGAGCTTCA . 60.0 23.0 84.0 0.0 . 169 . . . none . . PASS Atlas-SNP VOPP1 81552 hgsc.bcm.edu hg19 7 55560085 55560085 + Missense_Mutation SNP A A G novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . VOPP1 NM_030796 exon4 c.T218C p.F73S CAGCAGAAAAGCA . 149.0 35.0 163.0 0.0 . 14 . . . none . . PASS Atlas-SNP ZNF713 349075 hgsc.bcm.edu hg19 7 56006915 56006915 + Missense_Mutation SNP A A C novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . ZNF713 NM_182633 exon4 c.A509C p.N170T AGTGTAATAAATT . 184.0 48.0 245.0 0.0 . 47 . . . none . . PASS Atlas-SNP MET 4233 hgsc.bcm.edu hg19 7 116423474 116423474 + Missense_Mutation SNP T T C rs121913245 TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 MET,rectum,carcinoma,+1,5 MET NM_001127500 exon19 c.T3803C p.M1268T AGTGGATGGCTTT . 136.0 45.0 138.0 0.0 . 412 . . . weak . . PASS Atlas-SNP CTTNBP2 83992 hgsc.bcm.edu hg19 7 117375153 117375153 + Silent SNP T T A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . CTTNBP2 NM_033427 exon16 c.A3690T p.G1230G TCCATTTCCTGAA . 188.0 60.0 181.0 0.0 . 200 . . . none . . PASS Atlas-SNP PTPRZ1 5803 hgsc.bcm.edu hg19 7 121616253 121616253 + Silent SNP C C T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . PTPRZ1 NM_001206838 exon5 c.C483T p.D161D TGCGGACCGATTT . 75.0 27.0 53.0 0.0 . 605 . . . none . . PASS Atlas-SNP SLC13A1 6561 hgsc.bcm.edu hg19 7 122839917 122839917 + Missense_Mutation SNP G G C novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . SLC13A1 NM_022444 exon1 c.C84G p.I28M GAGGACGATGGGC . 95.0 31.0 75.0 0.0 . 110 . . . none . . PASS Atlas-SNP MLL3 58508 hgsc.bcm.edu hg19 7 151877112 151877112 + Missense_Mutation SNP G G T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . MLL3 NM_170606 exon37 c.C7249A p.P2417T GCCCTGGATGAGG . 119.0 41.0 122.0 0.0 . 1564 . . . none . . PASS Atlas-SNP ZNF572 137209 hgsc.bcm.edu hg19 8 125988832 125988832 + Missense_Mutation SNP C C A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . ZNF572 NM_152412 exon3 c.C322A p.H108N CCCAATCACCAGG . 156.0 44.0 224.0 0.0 . 82 . . . none . . PASS Atlas-SNP RANBP6 26953 hgsc.bcm.edu hg19 9 6012658 6012658 + Missense_Mutation SNP T T G novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 RANBP6,bladder,carcinoma,0,7 RANBP6 NM_012416 exon1 c.A2950C p.I984L TCCCTATTGCTGA . 94.0 5.0 106.0 0.0 . 127 . . . none . . PASS Atlas-SNP RANBP6 26953 hgsc.bcm.edu hg19 9 6012698 6012698 + Silent SNP G G T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . RANBP6 NM_012416 exon1 c.C2910A p.T970T TTTTTTGGTTTTG . 75.0 5.0 81.0 0.0 . 127 . . . none . . PASS Atlas-SNP PTPLAD2 401494 hgsc.bcm.edu hg19 9 21008120 21008120 + Silent SNP A A G novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . PTPLAD2 NM_001010915 exon6 c.T516C p.P172P AAAATAAGGCAGC . 162.0 51.0 178.0 0.0 . 26 . . . none . . PASS Atlas-SNP NOL6 65083 hgsc.bcm.edu hg19 9 33467722 33467722 + Silent SNP G G A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . NOL6 NM_022917 exon12 c.C1569T p.N523N CAGCAGGTTCAGC . 68.0 22.0 56.0 0.0 . 85 . . . none . . PASS Atlas-SNP ZBTB5 9925 hgsc.bcm.edu hg19 9 37442100 37442100 + Missense_Mutation SNP C C T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . ZBTB5 NM_014872 exon2 c.G449A p.G150E CTTAGTCCCAGCT . 57.0 19.0 68.0 0.0 . 43 . . . none . . PASS Atlas-SNP GFI1B 8328 hgsc.bcm.edu hg19 9 135863782 135863782 + Missense_Mutation SNP C C T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . GFI1B NM_001135031 exon4 c.C437T p.T146I CCAGCACTGAGCC . 52.0 18.0 52.0 0.0 . 37 . . . none . . PASS Atlas-SNP AGAP11 119385 hgsc.bcm.edu hg19 10 88768386 88768386 + Missense_Mutation SNP G G C novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . . NM_133447 exon12 c.G377C p.G126A AACAGGGCATGCT . 114.0 42.0 121.0 0.0 . . . . . none . . PASS Atlas-SNP WDR96 80217 hgsc.bcm.edu hg19 10 105990410 105990410 + Missense_Mutation SNP T T C novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . WDR96 NM_025145 exon2 c.A257G p.K86R TTTAGCTTCCGGT . 98.0 34.0 121.0 0.0 . 183 . . . none . . PASS Atlas-SNP ATRNL1 26033 hgsc.bcm.edu hg19 10 117228744 117228744 + Missense_Mutation SNP G G T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . ATRNL1 NM_207303 exon24 c.G3559T p.D1187Y TACAGAGATAGTT . 191.0 50.0 234.0 0.0 . 219 . . . none . . PASS Atlas-SNP QSER1 79832 hgsc.bcm.edu hg19 11 32955850 32955850 + Missense_Mutation SNP A A G novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . QSER1 NM_001076786 exon4 c.A2659G p.K887E GATTCTAAATCTC . 121.0 38.0 123.0 0.0 . 153 . . . none . . PASS Atlas-SNP QSER1 79832 hgsc.bcm.edu hg19 11 32955852 32955852 + Missense_Mutation SNP A A T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . QSER1 NM_001076786 exon4 c.A2661T p.K887N TTCTAAATCTCAT . 119.0 38.0 124.0 0.0 . 153 . . . none . . PASS Atlas-SNP IGHMBP2 3508 hgsc.bcm.edu hg19 11 68703885 68703885 + Missense_Mutation SNP T T G novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . IGHMBP2 NM_002180 exon13 c.T1937G p.I646S ACGATATTGTCCC . 131.0 43.0 98.0 0.0 . 83 . . . none . . PASS Atlas-SNP SIDT2 51092 hgsc.bcm.edu hg19 11 117064631 117064631 + Silent SNP C C T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . SIDT2 NM_001040455 exon24 c.C2274T p.V758V CGTGGTCTGGGGC . 39.0 10.0 41.0 0.0 . 82 . . . none . . PASS Atlas-SNP RNF26 79102 hgsc.bcm.edu hg19 11 119206568 119206568 + Missense_Mutation SNP C C A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . RNF26 NM_032015 exon1 c.C736A p.H246N GTGTTGCATCCGG . 23.0 4.0 25.0 0.0 . 23 . . . none . . PASS Atlas-SNP B3GAT1 27087 hgsc.bcm.edu hg19 11 134253770 134253770 + Missense_Mutation SNP G G C novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . B3GAT1 NM_054025 exon3 c.C425G p.T142R AGGTGCGTGTAGT . 40.0 5.0 53.0 0.0 . 49 . . . none . . PASS Atlas-SNP PTPRB 5787 hgsc.bcm.edu hg19 12 70974991 70974991 + Missense_Mutation SNP T T G novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . PTPRB NM_001109754 exon10 c.A2403C p.E801D GTAAAATTCTACG . 161.0 76.0 151.0 0.0 . 676 . . . none . . PASS Atlas-SNP KNTC1 9735 hgsc.bcm.edu hg19 12 123034324 123034324 + Silent SNP C C A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . KNTC1 NM_014708 exon13 c.C999A p.L333L AAACCTCATGGTT . 122.0 54.0 98.0 0.0 . 182 . . . none . . PASS Atlas-SNP ZIC5 85416 hgsc.bcm.edu hg19 13 100623797 100623797 + Missense_Mutation SNP C C G novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . ZIC5 NM_033132 exon1 c.G133C p.A45P CCTGAGCCGTTGC . 69.0 18.0 65.0 0.0 . 38 . . . none . . PASS Atlas-SNP ZIC5 85416 hgsc.bcm.edu hg19 13 100623798 100623798 + Silent SNP C C T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . ZIC5 NM_033132 exon1 c.G132A p.T44T CTGAGCCGTTGCC . 69.0 16.0 66.0 0.0 . 38 . . . none . . PASS Atlas-SNP TPP2 7174 hgsc.bcm.edu hg19 13 103289504 103289504 + Missense_Mutation SNP G G A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . TPP2 NM_003291 exon14 c.G1751A p.S584N GTCCCAGCCATTT . 68.0 22.0 59.0 0.0 . 124 . . . none . . PASS Atlas-SNP SYNE2 23224 hgsc.bcm.edu hg19 14 64494496 64494496 + Silent SNP T T C novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . SYNE2 NM_182914 exon43 c.T6699C p.L2233L AAGTCTTCTTCAA . 156.0 55.0 165.0 0.0 . 577 . . . none . . PASS Atlas-SNP CPSF2 53981 hgsc.bcm.edu hg19 14 92627590 92627590 + Missense_Mutation SNP A A T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . CPSF2 NM_017437 exon15 c.A2256T p.R752S CCGCAGAGTAAGT . 102.0 32.0 115.0 0.0 . 63 . . . none . . PASS Atlas-SNP TSC2 7249 hgsc.bcm.edu hg19 16 2112991 2112991 + Silent SNP C C G novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . TSC2 NM_001114382 exon14 c.C1380G p.A460A AGGCGCCGTGCGC . 67.0 14.0 40.0 0.0 . 364 . . . none . . PASS Atlas-SNP ZFHX3 463 hgsc.bcm.edu hg19 16 72991450 72991450 + Silent SNP G G A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . ZFHX3 NM_006885 exon2 c.C2595T p.Y865Y GGCCAGGTAGTAT . 73.0 26.0 77.0 0.0 . 404 . . . none . . PASS Atlas-SNP CTC1 80169 hgsc.bcm.edu hg19 17 8137889 8137889 + Missense_Mutation SNP C C T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . CTC1 NM_025099 exon10 c.G1702A p.D568N TAGGGTCAAAGGA . 188.0 53.0 173.0 0.0 . 75 . . . none . . PASS Atlas-SNP MYH8 4626 hgsc.bcm.edu hg19 17 10299694 10299694 + Missense_Mutation SNP C C A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . MYH8 NM_002472 exon33 c.G4606T p.V1536L GTTCTACTTGCTT . 68.0 19.0 80.0 0.0 . 346 . . . none . . PASS Atlas-SNP SPAG5 10615 hgsc.bcm.edu hg19 17 26906847 26906847 + Missense_Mutation SNP A A C novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . SPAG5 NM_006461 exon17 c.T2806G p.S936A GAGTTGATTCTGG . 111.0 29.0 132.0 0.0 . 92 . . . none . . PASS Atlas-SNP LAMA3 3909 hgsc.bcm.edu hg19 18 21343469 21343469 + Silent SNP G G T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . LAMA3 NM_001127717 exon8 c.G1164T p.G388G TGGAGGGGTCTGC . 84.0 23.0 96.0 0.0 . 397 . . . none . . PASS Atlas-SNP C18orf25 147339 hgsc.bcm.edu hg19 18 43796193 43796193 + Missense_Mutation SNP A A T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . C18orf25 NM_145055 exon2 c.A347T p.E116V AGAATGAACCCTC . 144.0 42.0 146.0 0.0 . 27 . . . none . . PASS Atlas-SNP PHLPP1 23239 hgsc.bcm.edu hg19 18 60646284 60646284 + Missense_Mutation SNP G G T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . PHLPP1 NM_194449 exon17 c.G4774T p.D1592Y GCCAGTGATGAGG . 103.0 27.0 110.0 0.0 . 164 . . . none . . PASS Atlas-SNP VAV1 7409 hgsc.bcm.edu hg19 19 6854009 6854009 + Missense_Mutation SNP C C T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . VAV1 NM_005428 exon26 c.C2384T p.A795V TCTGCGCCCGAGA . 38.0 14.0 48.0 0.0 . 140 . . . none . . PASS Atlas-SNP C19orf57 79173 hgsc.bcm.edu hg19 19 14004035 14004035 + Missense_Mutation SNP A A G novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . C19orf57 NM_024323 exon4 c.T208C p.S70P CAGGGGAGCTATG . 94.0 32.0 92.0 0.0 . 34 . . . none . . PASS Atlas-SNP C19orf57 79173 hgsc.bcm.edu hg19 19 14004037 14004037 + Splice_Site SNP C C T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . C19orf57 NM_024323 exon5 c.207-1G>A . GGGGAGCTATGTA . 93.0 32.0 88.0 0.0 . 34 . . . none . . PASS Atlas-SNP ISYNA1 51477 hgsc.bcm.edu hg19 19 18545729 18545729 + Silent SNP G G T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . ISYNA1 NM_016368 exon11 c.C1671A p.T557T TCAGGTGGTGGGC . 85.0 29.0 69.0 0.0 . 31 . . . none . . PASS Atlas-SNP ZNF536 9745 hgsc.bcm.edu hg19 19 30935607 30935607 + Silent SNP C C A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . ZNF536 NM_014717 exon2 c.C1138A p.R380R TGCGGCCGGCGCT . 82.0 25.0 68.0 0.0 . 424 . . . none . . PASS Atlas-SNP ECH1 1891 hgsc.bcm.edu hg19 19 39321795 39321795 + Missense_Mutation SNP T T G novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . ECH1 NM_001398 exon3 c.A272C p.E91A AAGCACTCTACCA . 76.0 28.0 94.0 0.0 . 14 . . . none . . PASS Atlas-SNP MAP3K10 4294 hgsc.bcm.edu hg19 19 40721175 40721175 + Silent SNP G G C novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . MAP3K10 NM_002446 exon10 c.G2841C p.L947L GCCCCTGTGCGGG . 122.0 40.0 115.0 0.0 . 70 . . . none . . PASS Atlas-SNP CEACAM5 1048 hgsc.bcm.edu hg19 19 42219064 42219064 + Missense_Mutation SNP T T A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . CEACAM5 NM_004363 exon3 c.T599A p.L200H GGACCCTCACTCT . 138.0 34.0 144.0 0.0 . 84 . . . none . . PASS Atlas-SNP SYMPK 8189 hgsc.bcm.edu hg19 19 46324744 46324744 + Splice_Site SNP C C T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 SYMPK,NS,carcinoma,0,1 SYMPK NM_004819 exon23 c.2792-1G>A . CCTCACCTGCAGC . 40.0 14.0 49.0 0.0 . 104 . . . none . . PASS Atlas-SNP PPP5C 5536 hgsc.bcm.edu hg19 19 46888119 46888119 + Missense_Mutation SNP T T A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 PPP5C,bladder,carcinoma,0,1 PPP5C NM_006247 exon7 c.T857A p.L286H TCACCCTTTTCGG . 67.0 14.0 56.0 0.0 . 44 . . . none . . PASS Atlas-SNP PPP2R1A 5518 hgsc.bcm.edu hg19 19 52719042 52719042 + Missense_Mutation SNP C C T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . PPP2R1A NM_014225 exon7 c.C818T p.A273V AGAAAGCAGTGGG . 77.0 27.0 73.0 0.0 . 187 . . . none . . PASS Atlas-SNP SSC5D 284297 hgsc.bcm.edu hg19 19 56028874 56028874 + Missense_Mutation SNP T T A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . SSC5D NM_001144950 exon14 c.T3231A p.S1077R CTCCAGTGTGGTT . 101.0 33.0 95.0 0.0 . 65 . . . none . . PASS Atlas-SNP SDCBP2 27111 hgsc.bcm.edu hg19 20 1293357 1293357 + Missense_Mutation SNP C C A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . SDCBP2 NM_080489 exon6 c.G434T p.G145V CGCAGCCCCACAA . 49.0 19.0 43.0 0.0 . 78 . . . none . . PASS Atlas-SNP EMILIN3 90187 hgsc.bcm.edu hg19 20 39990966 39990966 + Missense_Mutation SNP G G T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . EMILIN3 NM_052846 exon4 c.C1243A p.P415T CGGCCGGGGCACC . 51.0 18.0 49.0 0.0 . 63 . . . none . . PASS Atlas-SNP SIK1 150094 hgsc.bcm.edu hg19 21 44838412 44838412 + Missense_Mutation SNP A A T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . SIK1 NM_173354 exon12 c.T1472A p.V491D GGGGAGACGACTA . 90.0 23.0 92.0 0.0 . 65 . . . none . . PASS Atlas-SNP TST 7263 hgsc.bcm.edu hg19 22 37407323 37407323 + Missense_Mutation SNP G G T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . TST NM_003312 exon3 c.C639A p.F213L GTCCATGAAAGGC . 100.0 41.0 97.0 0.0 . 22 . . . none . . PASS Atlas-SNP CD33 945 hgsc.bcm.edu hg19 19 51728819 51728820 + Frame_Shift_Ins INS - - T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . CD33 NM_001177608 exon2 c.383_384insT p.S128fs . . 120.0 35.0 111.0 0.0 . 55 . 0.291667 0 none . . PASS Atlas-Indel,Pindel ZC3H7A 29066 hgsc.bcm.edu hg19 16 11856532 11856534 + In_Frame_Del DEL CTC CTC - novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 CTC CTC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 ZC3H7A,colon,carcinoma,+1,1 ZC3H7A NM_014153 exon17 c.2073_2075del p.691_692del . . 55.0 11.0 64.0 0.0 . 72 . 0.2 0 none . . PASS Atlas-INDEL PEX5 5830 hgsc.bcm.edu hg19 12 7351708 7351710 + In_Frame_Del DEL TGG TGG - novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 TGG TGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . PEX5 NM_001131023 exon6 c.594_596del p.198_199del . . 62.0 13.0 53.0 0.0 . 63 . 0.209677 0 none . . PASS Atlas-Indel,Pindel NVL 4931 hgsc.bcm.edu hg19 1 224455838 224455838 + Splice_Site DEL A A - novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . NVL NM_206840 exon18 c.1765-2T>- . . . 80.0 22.0 114.0 0.0 . 74 . 0.275 0 none . . PASS Atlas-Indel,Pindel TRAPPC6B 122553 hgsc.bcm.edu hg19 14 39627583 39627583 + Frame_Shift_Del DEL A A - novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . TRAPPC6B NM_001079537 exon3 c.174delC p.F58fs . . 64.0 29.0 71.0 0.0 . 13 . 0.453125 0 none . . PASS Atlas-Indel,Pindel PTGES 9536 hgsc.bcm.edu hg19 9 132502088 132502090 + In_Frame_Del DEL GAA GAA - novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 GAA GAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . PTGES NM_004878 exon3 c.260_262del p.87_88del . . 231.0 73.0 244.0 0.0 . 7 . 0.316017 0 none . . PASS Atlas-Indel,Pindel TBX21 30009 hgsc.bcm.edu hg19 17 45822709 45822709 + Frame_Shift_Del DEL T T - novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . TBX21 NM_013351 exon6 c.1584delG p.Q528fs . . 50.0 15.0 51.0 0.0 . 50 . 0.3 0 none . . PASS Atlas-Indel,Pindel PRAMEF19 645414 hgsc.bcm.edu hg19 1 13475225 13475225 + Frame_Shift_Del DEL A A - novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . PRAMEF19 NM_001099790 exon3 c.905delA p.Y302fs . . 305.0 92.0 307.0 0.0 . 6 . 0.301639 0 none . . PASS Atlas-INDEL MLL3 58508 hgsc.bcm.edu hg19 7 151919089 151919091 + In_Frame_Del DEL GCT GCT - novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 GCT GCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . MLL3 NM_170606 exon22 c.3495_3497del p.1165_1166del . . 182.0 55.0 228.0 0.0 . 1564 . 0.302198 0 none . . PASS Atlas-Indel,Pindel DSCAML1 57453 hgsc.bcm.edu hg19 11 117335821 117335844 + In_Frame_Del DEL GTTGCTGCCGGGGCTGTTCTCTCT GTTGCTGCCGGGGCTGTTCTCTCT - novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 GTTGCTGCCGGGGCTGTTCTCTCT GTTGCTGCCGGGGCTGTTCTCTCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . DSCAML1 NM_020693 exon17 c.3260_3283del p.1087_1095del . . 107.0 30.0 105.0 0.0 . 286 . 0.280374 0 none . . PASS Atlas-Indel,Pindel USP43 124739 hgsc.bcm.edu hg19 17 9559778 9559778 + Frame_Shift_Del DEL A A - novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . USP43 NM_001267576 exon2 c.562delG p.E188fs . . 146.0 42.0 157.0 0.0 . 65 . 0.287671 0 none . . PASS Atlas-Indel,Pindel HLA-C 3107 hgsc.bcm.edu hg19 6 31239449 31239450 + Frame_Shift_Ins INS - - T novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . HLA-C NM_002117 exon2 c.270_271insA p.K90fs . . 133.0 31.0 107.0 0.0 . 92 . 0.233083 0 none . . PASS Atlas-Indel,Pindel JAZF1 221895 hgsc.bcm.edu hg19 7 27872487 27872487 + Frame_Shift_Del DEL G G - novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . JAZF1 NM_175061 exon5 c.665delT p.L222fs . . 73.0 20.0 77.0 0.0 . 13 . 0.273973 0 none . . PASS Atlas-Indel,Pindel PRAMEF19 645414 hgsc.bcm.edu hg19 1 13696061 13696061 + Frame_Shift_Del DEL A A - novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . PRAMEF19 NM_001099790 exon3 c.905delA p.Y302fs . . 242.0 46.0 323.0 0.0 . 6 . 0.190083 0 none . . PASS Atlas-Indel,Pindel TLN2 83660 hgsc.bcm.edu hg19 15 63112730 63112731 + Frame_Shift_Ins INS - - A novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . TLN2 NM_015059 exon51 c.6923_6924insA p.T2308fs . . 96.0 25.0 91.0 0.0 . 253 . 0.260417 0 none . . PASS Atlas-Indel,Pindel ZC3H7A 29066 hgsc.bcm.edu hg19 16 11856530 11856530 + Frame_Shift_Del DEL C C - novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . ZC3H7A NM_014153 exon17 c.2077delC p.Q693fs . . 53.0 11.0 64.0 0.0 . 72 . 0.207547 0 none . . PASS Atlas-INDEL PABPC3 5042 hgsc.bcm.edu hg19 13 25670355 25670366 + In_Frame_Del DEL AGCTACCCAACG AGCTACCCAACG - novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 AGCTACCCAACG AGCTACCCAACG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . PABPC3 NM_030979 exon1 c.18_29del p.6_10del . . 91.0 16.0 93.0 0.0 . 129 . 0.175824 0 none . . PASS Atlas-INDEL PRB4 5545 hgsc.bcm.edu hg19 12 11461534 11461596 + Frame_Shift_Del DEL CCTCCTTGTGGGGGTGGTCTTTCTGGCTTTCCTGGAGGAGGTGGGGTACCTTGGGACTGGTTT CCTCCTTGTGGGGGTGGTCTTTCTGGCTTTCCTGGAGGAGGTGGGGTACCTTGGGACTGGTTT - novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 CCTCCTTGTGGGGGTGGTCTTTCTGGCTTTCCTGGAGGAGGTGGGGTACCTTGGGACTGGTTT CCTCCTTGTGGGGGTGGTCTTTCTGGCTTTCCTGGAGGAGGTGGGGTACCTTGGGACTGGTTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . PRB4 NM_001261399 exon3 c.322_334del p.108_112del . . 123.0 12.0 96.0 0.0 . 59 . 0.098 . none . . PASS Pindel ZC3H7A 29066 hgsc.bcm.edu hg19 16 11856530 11856535 + In_Frame_Del DEL CGCTCC CGCTCC - novel TCGA-5P-A9KA-01A-11D-A42J-10 TCGA-5P-A9KA-10A-01D-A42M-10 CGCTCC CGCTCC . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 1e5c321a-1ec5-43d8-a9ce-dea256ce836f 88f8e541-dd2d-4548-bad0-c30265b48b79 . ZC3H7A NM_014153 exon17 c.2072_2077del p.691_693del . . 56.0 10.0 65.0 0.0 . 72 . 0.179 . none . . PASS Pindel