Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
TMEM52	339456	hgsc.bcm.edu	hg19	1	1850654	1850654	+	Silent	SNP	G	G	C	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	TMEM52,NS,carcinoma,0,1	TMEM52	NM_178545	exon1	c.C51G	p.L17L	CGGCAGGAGCGGC	.	9.0	2.0	11.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
CHD5	26038	hgsc.bcm.edu	hg19	1	6212475	6212475	+	Silent	SNP	G	G	T	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	CHD5	NM_015557	exon6	c.C867A	p.S289S	CACCGAGGAGCCT	.	42.0	7.0	44.0	0.0	.	267	.	.	.	none	.	.	PASS	Atlas-SNP
GCLM	2730	hgsc.bcm.edu	hg19	1	94360206	94360206	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	GCLM	NM_002061	exon6	c.T619C	p.F207L	TGTCAAATTGTTT	.	61.0	12.0	81.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
ATXN7L2	127002	hgsc.bcm.edu	hg19	1	110035211	110035211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	ATXN7L2	NM_153340	exon11	c.A2158G	p.K720E	CAGTCAAAAGCCC	.	74.0	17.0	73.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
TRIM33	51592	hgsc.bcm.edu	hg19	1	114942184	114942184	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	TRIM33	NM_033020	exon18	c.C3015T	p.T1005T	TTTCACGGTGGAT	.	70.0	19.0	71.0	0.0	.	115	.	.	.	none	.	.	PASS	Atlas-SNP
VTCN1	79679	hgsc.bcm.edu	hg19	1	117699520	117699520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	VTCN1	NM_024626	exon3	c.A121G	p.T41A	CGACAGTAGTGAC	.	45.0	13.0	54.0	0.0	.	26	.	.	.	none	.	.	PASS	Atlas-SNP
PDE4DIP	9659	hgsc.bcm.edu	hg19	1	144881617	144881617	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	PDE4DIP	NM_014644	exon25	c.T3579A	p.D1193E	CTGGTTATCCAAC	.	78.0	10.0	65.0	0.0	.	817	.	.	.	none	.	.	PASS	Atlas-SNP
CCT3	7203	hgsc.bcm.edu	hg19	1	156279019	156279019	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	CCT3	NM_005998	exon14	c.G1609C	p.G537R	CCCCGCCTTGCCG	.	39.0	8.0	52.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	hg19	1	158621173	158621173	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	SPTA1	NM_003126	exon24	c.G3461C	p.G1154A	TGAGCTCCTTCTG	.	105.0	26.0	104.0	0.0	.	720	.	.	.	none	.	.	PASS	Atlas-SNP
C1orf74	148304	hgsc.bcm.edu	hg19	1	209956492	209956492	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	C1orf74	NM_152485	exon2	c.A488G	p.H163R	GAGGAATGGAGCC	.	89.0	24.0	117.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
USH2A	7399	hgsc.bcm.edu	hg19	1	216595303	216595303	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	USH2A	NM_007123	exon2	c.A376G	p.S126G	TAAAACTTGCAGA	.	110.0	27.0	112.0	0.0	.	1168	.	.	.	none	.	.	PASS	Atlas-SNP
SMYD1	150572	hgsc.bcm.edu	hg19	2	88390544	88390544	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	SMYD1	NM_198274	exon4	c.G542C	p.G181A	GCAACGGTTTTAC	.	41.0	10.0	49.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
DDX18	8886	hgsc.bcm.edu	hg19	2	118578868	118578868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	DDX18	NM_006773	exon4	c.G646A	p.G216S	CTGGAAGGCAGGT	.	202.0	58.0	233.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
LRP2	4036	hgsc.bcm.edu	hg19	2	170062024	170062024	+	Silent	SNP	A	A	G	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	LRP2	NM_004525	exon41	c.T7680C	p.Y2560Y	CTCTTCATAGTCC	.	64.0	21.0	62.0	0.0	.	751	.	.	.	none	.	.	PASS	Atlas-SNP
TTN	7273	hgsc.bcm.edu	hg19	2	179466287	179466287	+	Silent	SNP	T	T	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	TTN	NM_001267550	exon287	c.A55437T	p.V18479V	GCCTGGTACATCT	.	45.0	10.0	38.0	0.0	.	18412	.	.	.	none	.	.	PASS	Atlas-SNP
CALCRL	10203	hgsc.bcm.edu	hg19	2	188245407	188245407	+	Missense_Mutation	SNP	A	A	T	rs374525357		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	CALCRL,caecum,carcinoma,0,1	CALCRL	NM_001271751	exon5	c.T292A	p.S98T	TACCTGATGGATC	.	138.0	22.0	150.0	0.0	.	73	.	.	.	weak	.	.	PASS	Atlas-SNP
CCNYL1	151195	hgsc.bcm.edu	hg19	2	208576635	208576635	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	CCNYL1	NM_001142300	exon1	c.G15A	p.L5L	CACGCTGACCTGT	.	97.0	24.0	131.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
ITM2C	81618	hgsc.bcm.edu	hg19	2	231741620	231741620	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	ITM2C,NS,carcinoma,0,3	ITM2C	NM_030926	exon4	c.G499C	p.E167Q	GTCATCGAACTCA	.	44.0	9.0	61.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
SEC13	6396	hgsc.bcm.edu	hg19	3	10346761	10346761	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	SEC13	NM_183352	exon7	c.C664T	p.P222S	TGGAGGGGGCCCA	.	60.0	17.0	35.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
CTNNB1	1499	hgsc.bcm.edu	hg19	3	41268729	41268729	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	CTNNB1	NM_001098209	exon7	c.G967C	p.A323P	CCCCAAGCTTTAG	.	76.0	20.0	74.0	0.0	.	4904	.	.	.	none	.	.	PASS	Atlas-SNP
DAG1	1605	hgsc.bcm.edu	hg19	3	49568721	49568721	+	Silent	SNP	C	C	G	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	DAG1	NM_001177642	exon4	c.C777G	p.S259S	TCTCTCCTGGAAG	.	60.0	22.0	58.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
CACNA1D	776	hgsc.bcm.edu	hg19	3	53845165	53845165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	CACNA1D	NM_000720	exon49	c.G6278A	p.R2093H	TGGGACGCTATGC	.	100.0	27.0	101.0	0.0	.	324	.	.	.	none	.	.	PASS	Atlas-SNP
FAM208A	23272	hgsc.bcm.edu	hg19	3	56694957	56694957	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	FAM208A	NM_001112736	exon10	c.T1249G	p.L417V	GACCTAAGTATGT	.	65.0	12.0	105.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
PARL	55486	hgsc.bcm.edu	hg19	3	183602589	183602589	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	PARL	NM_018622	exon1	c.G46T	p.A16S	CCCACGCCTGGCC	.	29.0	5.0	29.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
SLC2A9	56606	hgsc.bcm.edu	hg19	4	10022970	10022970	+	Silent	SNP	C	C	T	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	SLC2A9	NM_020041	exon1	c.G84A	p.G28G	CCCTGGCCCTGGA	.	67.0	32.0	88.0	0.0	.	158	.	.	.	none	.	.	PASS	Atlas-SNP
FAT4	79633	hgsc.bcm.edu	hg19	4	126372770	126372770	+	Silent	SNP	T	T	C	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	FAT4	NM_024582	exon9	c.T10599C	p.T3533T	GTCCACTGACCCT	.	93.0	19.0	90.0	0.0	.	1752	.	.	.	none	.	.	PASS	Atlas-SNP
CDH9	1007	hgsc.bcm.edu	hg19	5	26890623	26890623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	CDH9	NM_016279	exon8	c.C1304T	p.S435L	TTTTCTGAGTGAA	.	88.0	26.0	112.0	0.0	.	305	.	.	.	none	.	.	PASS	Atlas-SNP
SETD9	133383	hgsc.bcm.edu	hg19	5	56207069	56207069	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	.	NM_153706	exon2	c.A172C	p.K58Q	TTACTGAAAGTTT	.	135.0	32.0	135.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
POU5F2	134187	hgsc.bcm.edu	hg19	5	93076952	93076952	+	Silent	SNP	G	G	C	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	POU5F2	NM_153216	exon1	c.C318G	p.A106A	CCGCAGGGCAATG	.	45.0	11.0	57.0	0.0	.	10	.	.	.	none	.	.	PASS	Atlas-SNP
NREP	9315	hgsc.bcm.edu	hg19	5	111312420	111312420	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	.	NM_001142475	exon1	c.A17T	p.N6I	GAATAATTCCAAA	.	100.0	21.0	133.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
CEP120	153241	hgsc.bcm.edu	hg19	5	122713195	122713195	+	Missense_Mutation	SNP	C	C	T	rs376401743		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	CEP120	NM_153223	exon17	c.G2231A	p.R744H	CGCTGACGTTCTG	.	50.0	12.0	63.0	0.0	.	72	.	.	.	weak	.	.	PASS	Atlas-SNP
NPM1	4869	hgsc.bcm.edu	hg19	5	170814986	170814986	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	NPM1	NM_199185	exon1	c.C34A	p.L12M	AGCCCCCTGAGGC	.	89.0	25.0	84.0	0.0	.	5003	.	.	.	none	.	.	PASS	Atlas-SNP
ABCF1	23	hgsc.bcm.edu	hg19	6	30558445	30558445	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	ABCF1	NM_001025091	exon25	c.G2505A	p.L835L	GGCCCTGGGTGAA	.	122.0	34.0	152.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
RPL10A	4736	hgsc.bcm.edu	hg19	6	35437954	35437954	+	Splice_Site	SNP	A	A	G	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	RPL10A	NM_007104	exon5	c.311-2A>G	.	TCTATCAGCCAAG	.	41.0	14.0	33.0	0.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
SAYSD1	55776	hgsc.bcm.edu	hg19	6	39082699	39082699	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	.	NM_018322	exon1	c.C167G	p.P56R	GGCCTAGGTTTCC	.	49.0	13.0	59.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SLC29A1	2030	hgsc.bcm.edu	hg19	6	44201182	44201182	+	Missense_Mutation	SNP	G	G	C	rs74750454	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	SLC29A1	NM_004955	exon13	c.G1288C	p.A430P	GAGACCGCAGGAG	.	60.0	10.0	56.0	0.0	.	45	.	.	.	alt	G|0.999;A|0.001	.	PASS	Atlas-SNP
GPRC6A	222545	hgsc.bcm.edu	hg19	6	117121778	117121778	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	GPRC6A	NM_148963	exon4	c.A1517T	p.Q506L	GTTTCCTGATCTG	.	83.0	12.0	111.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
DNAJC30	84277	hgsc.bcm.edu	hg19	7	73097483	73097483	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	DNAJC30	NM_032317	exon1	c.T271C	p.F91L	GCGTGAAGCGCTC	.	98.0	17.0	64.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
COPS6	10980	hgsc.bcm.edu	hg19	7	99686979	99686979	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	COPS6	NM_006833	exon2	c.T143C	p.I48T	TTGTCATTCTCAA	.	60.0	13.0	49.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
DUS4L	11062	hgsc.bcm.edu	hg19	7	107217029	107217029	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	DUS4L	NM_001270419	exon7	c.G698T	p.G233V	TTACTGGGACAGA	.	127.0	20.0	117.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
C8orf86	389649	hgsc.bcm.edu	hg19	8	38369906	38369906	+	Silent	SNP	T	T	C	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	C8orf86	NM_207412	exon3	c.A671G	p.X224X	GGTTCTTAAACTT	.	94.0	28.0	99.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
CYHR1	50626	hgsc.bcm.edu	hg19	8	145689559	145689559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	CYHR1	NM_032687	exon3	c.G530A	p.S177N	GCCCAGCTGCCTA	.	76.0	24.0	78.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
TSC1	7248	hgsc.bcm.edu	hg19	9	135781381	135781381	+	Silent	SNP	G	G	A	rs149439187		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	TSC1	NM_000368	exon15	c.C1584T	p.G528G	GCTGGCGCCCTGA	.	118.0	30.0	117.0	0.0	.	167	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
STOX1	219736	hgsc.bcm.edu	hg19	10	70644560	70644560	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	STOX1	NM_152709	exon3	c.G1008T	p.Q336H	TGCTCAGTTCCCA	.	93.0	30.0	160.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
BMPR1A	657	hgsc.bcm.edu	hg19	10	88678972	88678972	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	BMPR1A	NM_004329	exon10	c.G912C	p.Q304H	GACTCAGCTCTAT	.	86.0	20.0	112.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
MICAL2	9645	hgsc.bcm.edu	hg19	11	12263967	12263967	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	MICAL2	NM_014632	exon19	c.A2544T	p.E848D	GGAGGAAAAGATT	.	63.0	18.0	71.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
PIK3C2A	5286	hgsc.bcm.edu	hg19	11	17124355	17124355	+	Silent	SNP	G	G	T	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	PIK3C2A	NM_002645	exon23	c.C3705A	p.S1235S	AGCACAGGAATAG	.	54.0	4.0	57.0	0.0	.	148	.	.	.	none	.	.	PASS	Atlas-SNP
PHLDB1	23187	hgsc.bcm.edu	hg19	11	118498570	118498570	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	PHLDB1	NM_001144758	exon6	c.G1031C	p.R344P	AGGCCCGGAGAGC	.	33.0	8.0	30.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
AEBP2	121536	hgsc.bcm.edu	hg19	12	19615597	19615597	+	Silent	SNP	C	C	T	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	AEBP2	NM_001114176	exon2	c.C825T	p.S275S	CTCTAGCCCAGAT	.	70.0	11.0	78.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
KRT73	319101	hgsc.bcm.edu	hg19	12	53011930	53011930	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	KRT73	NM_175068	exon1	c.A379C	p.K127Q	GCACTTTCTGGAT	.	92.0	18.0	87.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
MON2	23041	hgsc.bcm.edu	hg19	12	62892784	62892784	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	MON2	NM_015026	exon5	c.C521G	p.T174S	TTGTTACTGTTGT	.	78.0	16.0	107.0	0.0	.	160	.	.	.	none	.	.	PASS	Atlas-SNP
RNFT2	84900	hgsc.bcm.edu	hg19	12	117178872	117178872	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	RNFT2	NM_001109903	exon3	c.G56C	p.S19T	ACAGCAGCAACAC	.	47.0	9.0	61.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
SACS	26278	hgsc.bcm.edu	hg19	13	23929405	23929405	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	SACS	NM_014363	exon8	c.C1346G	p.P449R	GGTAAAGGAAGGA	.	41.0	9.0	64.0	0.0	.	871	.	.	.	none	.	.	PASS	Atlas-SNP
RNF17	56163	hgsc.bcm.edu	hg19	13	25373622	25373622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	RNF17	NM_001184993	exon12	c.A1489G	p.R497G	AATACCAGAAAAC	.	65.0	21.0	101.0	0.0	.	259	.	.	.	none	.	.	PASS	Atlas-SNP
GPR12	2835	hgsc.bcm.edu	hg19	13	27333950	27333950	+	Silent	SNP	C	C	T	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	GPR12	NM_005288	exon2	c.G15A	p.L5L	GACCTTCAGGTCT	.	45.0	12.0	64.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
MYH7	4625	hgsc.bcm.edu	hg19	14	23893155	23893155	+	Silent	SNP	C	C	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	MYH7	NM_000257	exon23	c.G2883T	p.L961L	TTTGGCCAGTGTC	.	38.0	11.0	35.0	0.0	.	349	.	.	.	none	.	.	PASS	Atlas-SNP
ALDH6A1	4329	hgsc.bcm.edu	hg19	14	74531541	74531541	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	ALDH6A1	NM_005589	exon11	c.A1487T	p.N496I	TAGAAATTGGTGT	.	204.0	51.0	221.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	33941289	33941289	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	RYR3	NM_001243996	exon31	c.T3995A	p.I1332N	ACGCCATCCGCAT	.	50.0	14.0	49.0	0.0	.	760	.	.	.	none	.	.	PASS	Atlas-SNP
RYR3	6263	hgsc.bcm.edu	hg19	15	33941290	33941290	+	Silent	SNP	C	C	T	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	RYR3	NM_001243996	exon31	c.C3996T	p.I1332I	CGCCATCCGCATC	.	52.0	16.0	49.0	0.0	.	760	.	.	.	none	.	.	PASS	Atlas-SNP
EIF2AK4	440275	hgsc.bcm.edu	hg19	15	40268924	40268924	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	EIF2AK4	NM_001013703	exon12	c.G2128A	p.E710K	TCGGTGGAGTGGA	.	63.0	12.0	71.0	0.0	.	107	.	.	.	none	.	.	PASS	Atlas-SNP
LRRC57	255252	hgsc.bcm.edu	hg19	15	42839565	42839565	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	LRRC57	NM_153260	exon4	c.G386T	p.S129I	CGTAGGCTACAAA	.	72.0	23.0	71.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
DMXL2	23312	hgsc.bcm.edu	hg19	15	51758502	51758502	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	DMXL2,bladder,carcinoma,0,1	DMXL2	NM_001174116	exon30	c.C7399T	p.L2467F	AAGGAAGAAATGG	.	123.0	43.0	142.0	1.0	.	262	.	.	.	none	.	.	PASS	Atlas-SNP
ZSCAN10	84891	hgsc.bcm.edu	hg19	16	3141821	3141821	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	ZSCAN10	NM_032805	exon3	c.G508A	p.G170S	AGGGGCCCTGGGG	.	101.0	18.0	90.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
HSF4	3299	hgsc.bcm.edu	hg19	16	67199508	67199508	+	Silent	SNP	G	G	T	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	HSF4	NM_001538	exon4	c.G207T	p.A69A	CATGGCGAGCTTC	.	97.0	21.0	87.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
MINK1	50488	hgsc.bcm.edu	hg19	17	4788851	4788851	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	MINK1	NM_170663	exon7	c.G582A	p.W194X	CTACTGGATGGCT	.	73.0	21.0	70.0	0.0	.	110	.	.	.	none	.	.	PASS	Atlas-SNP
SLC2A4	6517	hgsc.bcm.edu	hg19	17	7187813	7187813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	SLC2A4,colon,carcinoma,0,1	SLC2A4	NM_001042	exon7	c.G737A	p.R246H	TGAAGCGCCTGAC	.	143.0	29.0	114.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
SHMT1	6470	hgsc.bcm.edu	hg19	17	18232685	18232685	+	Missense_Mutation	SNP	G	G	A	rs140862126		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	SHMT1	NM_004169	exon11	c.C1189T	p.R397W	TGGGCCGCAGAGC	.	48.0	9.0	46.0	0.0	.	36	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
EFCAB5	374786	hgsc.bcm.edu	hg19	17	28380417	28380417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	EFCAB5	NM_198529	exon10	c.G1445A	p.S482N	CCCAAAGTAAATT	.	170.0	31.0	179.0	0.0	.	122	.	.	.	none	.	.	PASS	Atlas-SNP
EFCAB5	374786	hgsc.bcm.edu	hg19	17	28380419	28380419	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	EFCAB5	NM_198529	exon10	c.A1447T	p.K483X	CAAAGTAAATTAT	.	168.0	30.0	180.0	0.0	.	122	.	.	.	none	.	.	PASS	Atlas-SNP
STAT3	6774	hgsc.bcm.edu	hg19	17	40481785	40481785	+	Silent	SNP	C	C	T	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	STAT3	NM_003150	exon12	c.G1119A	p.G373G	AACGTCCCCAGAG	.	120.0	37.0	113.0	0.0	.	268	.	.	.	none	.	.	PASS	Atlas-SNP
STAT3	6774	hgsc.bcm.edu	hg19	17	40481786	40481786	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	STAT3	NM_003150	exon12	c.G1118T	p.G373V	ACGTCCCCAGAGT	.	120.0	36.0	113.0	0.0	.	268	.	.	.	none	.	.	PASS	Atlas-SNP
EFTUD2	9343	hgsc.bcm.edu	hg19	17	42949881	42949881	+	Silent	SNP	G	G	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	EFTUD2	NM_004247	exon11	c.C927T	p.F309F	GCTGGAGAAGCAG	.	162.0	73.0	102.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
NFE2L1	4779	hgsc.bcm.edu	hg19	17	46128721	46128721	+	Silent	SNP	C	C	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	NFE2L1	NM_003204	exon2	c.C241A	p.R81R	ACTGCCCGGCGGC	.	83.0	32.0	76.0	0.0	.	60	.	.	.	none	.	.	PASS	Atlas-SNP
CLTC	1213	hgsc.bcm.edu	hg19	17	57754372	57754372	+	Silent	SNP	T	T	C	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	CLTC	NM_004859	exon17	c.T2619C	p.P873P	GGAGCCTGCTACT	.	91.0	34.0	95.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
ABCA10	10349	hgsc.bcm.edu	hg19	17	67170897	67170897	+	Missense_Mutation	SNP	A	A	G	rs368716488		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	ABCA10	NM_080282	exon25	c.T2899C	p.W967R	AAATCCATAACTG	.	236.0	57.0	187.0	0.0	.	209	.	.	.	weak	.	.	PASS	Atlas-SNP
DCC	1630	hgsc.bcm.edu	hg19	18	50432459	50432459	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	DCC	NM_005215	exon3	c.T458G	p.M153R	CCTTCATGGGAGA	.	46.0	13.0	74.0	0.0	.	360	.	.	.	none	.	.	PASS	Atlas-SNP
TNFRSF11A	8792	hgsc.bcm.edu	hg19	18	60017119	60017119	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	TNFRSF11A	NM_001270951	exon3	c.G232C	p.D78H	TACTTGGATAGCT	.	56.0	21.0	45.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF557	79230	hgsc.bcm.edu	hg19	19	7083714	7083714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	ZNF557	NM_001044387	exon8	c.T1252C	p.Y418H	AACTCCTACCTTT	.	171.0	37.0	214.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
KEAP1	9817	hgsc.bcm.edu	hg19	19	10602767	10602767	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	KEAP1,right_upper_lobe,carcinoma,0,1	KEAP1	NM_012289	exon3	c.G811T	p.V271L	AGCGCACGGCCCG	.	47.0	12.0	53.0	0.0	.	182	.	.	.	none	.	.	PASS	Atlas-SNP
IL17RA	23765	hgsc.bcm.edu	hg19	22	17590035	17590035	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	IL17RA	NM_014339	exon13	c.A1926C	p.E642D	GGAGGAAGGAGGA	.	423.0	106.0	404.0	1.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
MICAL3	57553	hgsc.bcm.edu	hg19	22	18300493	18300493	+	Missense_Mutation	SNP	C	C	T	rs369106641		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	MICAL3	NM_015241	exon26	c.G4934A	p.R1645H	GGCCGGCGCTCCT	.	40.0	7.0	32.0	0.0	.	53	.	.	.	weak	.	.	PASS	Atlas-SNP
PPIL2	23759	hgsc.bcm.edu	hg19	22	22024222	22024222	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	PPIL2	NM_014337	exon2	c.A53T	p.Y18F	CTGAATACACTCA	.	82.0	4.0	73.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
MN1	4330	hgsc.bcm.edu	hg19	22	28193956	28193956	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	MN1	NM_002430	exon1	c.A2576T	p.K859I	CTCAGTTTCCTCT	.	34.0	11.0	35.0	0.0	.	122	.	.	.	none	.	.	PASS	Atlas-SNP
EMID1	129080	hgsc.bcm.edu	hg19	22	29628294	29628294	+	Silent	SNP	C	C	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	EMID1	NM_133455	exon8	c.C726A	p.T242T	GGGCACCCCTGGA	.	158.0	56.0	160.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
SVIL	6840	hgsc.bcm.edu	hg19	10	29821690	29821690	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	SVIL	NM_021738	exon8	c.1607delA	p.E536fs	.	.	71.0	21.0	85.0	0.0	.	226	.	0.295775	0	none	.	.	PASS	Atlas-Indel,Pindel
MLLT6	4302	hgsc.bcm.edu	hg19	17	36880963	36880991	+	Frame_Shift_Del	DEL	CCCATGGCCAGCCTGCTGGCAGGAAGCTC	CCCATGGCCAGCCTGCTGGCAGGAAGCTC	-	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	CCCATGGCCAGCCTGCTGGCAGGAAGCTC	CCCATGGCCAGCCTGCTGGCAGGAAGCTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	MLLT6	NM_005937	exon19	c.2973_3001del	p.991_1001del	.	.	78.0	23.0	74.0	0.0	.	80	.	0.294872	0	none	.	.	PASS	Atlas-Indel,Pindel
KDM6A	7403	hgsc.bcm.edu	hg19	X	44929004	44929005	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	KDM6A	NM_021140	exon17	c.2104_2105insA	p.H702fs	.	.	81.0	49.0	98.0	0.0	.	274	.	0.604938	0	none	.	.	PASS	Atlas-Indel,Pindel
HMGCS1	3157	hgsc.bcm.edu	hg19	5	43294862	43294863	+	Frame_Shift_Ins	INS	-	-	GT	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	HMGCS1	NM_002130	exon6	c.1007_1008insAC	p.L336fs	.	.	53.0	19.0	50.0	0.0	.	33	.	0.358491	0	none	.	.	PASS	Atlas-Indel,Pindel
VWA3A	146177	hgsc.bcm.edu	hg19	16	22130234	22130234	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	VWA3A	NM_173615	exon12	c.1001delG	p.S334fs	.	.	152.0	25.0	140.0	0.0	.	115	.	0.164474	0	none	.	.	PASS	Atlas-Indel,Pindel
HIP1R	9026	hgsc.bcm.edu	hg19	12	123340130	123340131	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-5P-A9KE-01A-11D-A42J-10	TCGA-5P-A9KE-10A-01D-A42M-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	bbd6f0f2-a322-4772-8c98-3594288fbf8d	f4097292-72af-4234-b9af-3cdcbb8333b2	.	HIP1R	NM_003959	exon12	c.1026_1027insC	p.G342fs	.	.	41.0	13.0	46.0	0.0	.	68	.	0.317073	0	none	.	.	PASS	Atlas-Indel,Pindel