Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
DUSP27	92235	hgsc.bcm.edu	hg19	1	167097085	167097085	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	DUSP27	NM_001080426	exon5	c.A2717C	p.K906T	CCCAGAAACCTGA	.	56.0	5.0	66.0	0.0	.	235	.	.	.	none	.	.	PASS	Atlas-SNP
SMARCAL1	50485	hgsc.bcm.edu	hg19	2	217279802	217279802	+	Silent	SNP	C	C	G	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	SMARCAL1	NM_014140	exon3	c.C375G	p.P125P	TCCTCCCTTGGCA	.	109.0	44.0	105.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
MST1	4485	hgsc.bcm.edu	hg19	3	49723522	49723522	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	MST1,NS,carcinoma,0,2	MST1	NM_020998	exon9	c.C1120T	p.R374C	TACAACGCCGGAT	.	30.0	4.0	40.0	2.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
PARK2	5071	hgsc.bcm.edu	hg19	6	162206852	162206852	+	Missense_Mutation	SNP	G	G	C	rs34424986	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	PARK2_ENST00000366892,NS,malignant_melanoma,0,2	PARK2	NM_004562	exon7	c.C823G	p.R275G	ACTGCCGATCATT	.	42.0	2.0	48.0	0.0	.	96	.	.	.	alt	G|0.998;A|0.002	.	PASS	Atlas-SNP
TBP	6908	hgsc.bcm.edu	hg19	6	170871091	170871091	+	Silent	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	TBP,NS,carcinoma,0,1	TBP	NM_003194	exon3	c.G267A	p.Q89Q	GCAGCAGCAGCAG	.	71.0	3.0	60.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
FBXW2	26190	hgsc.bcm.edu	hg19	9	123527053	123527053	+	Silent	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	FBXW2	NM_012164	exon8	c.C1149T	p.D383D	GCGGTTGTCAAAC	.	125.0	11.0	139.0	0.0	.	34	.	.	.	none	.	.	PASS	Atlas-SNP
MMP13	4322	hgsc.bcm.edu	hg19	11	102826393	102826393	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	MMP13	NM_002427	exon1	c.G42T	p.W14C	ATGAGTCCAGCTC	.	101.0	10.0	114.0	0.0	.	75	.	.	.	none	.	.	PASS	Atlas-SNP
KRAS	3845	hgsc.bcm.edu	hg19	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	rs121913529	bycluster	TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	KRAS_ENST00000256078,NS,adenocarcinoma,0,66	KRAS	NM_004985	exon2	c.G35A	p.G12D	ACGCCACCAGCTC	.	37.0	19.0	29.0	0.0	.	30930	.	.	.	weak	.	.	PASS	Atlas-SNP
MTUS2	23281	hgsc.bcm.edu	hg19	13	29599704	29599704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	MTUS2_ENST00000431530,colon,carcinoma,-1,2	MTUS2	NM_001033602	exon1	c.C899T	p.S300L	TGGCATCGAAGGA	.	32.0	9.0	32.0	0.0	.	279	.	.	.	none	.	.	PASS	Atlas-SNP
SLC8A3	6547	hgsc.bcm.edu	hg19	14	70527578	70527578	+	Silent	SNP	C	C	T	rs376675749		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	SLC8A3,caecum,carcinoma,0,1	SLC8A3	NM_183002	exon3	c.G1863A	p.P621P	CCATTTCGGTTCA	.	71.0	22.0	101.0	0.0	.	234	.	.	.	weak	.	.	PASS	Atlas-SNP
TRIP11	9321	hgsc.bcm.edu	hg19	14	92470654	92470654	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	TRIP11	NM_004239	exon11	c.A3666T	p.E1222D	CCACTCTTCCATT	.	64.0	28.0	78.0	0.0	.	184	.	.	.	none	.	.	PASS	Atlas-SNP
ATP10A	57194	hgsc.bcm.edu	hg19	15	25972305	25972305	+	Splice_Site	SNP	A	A	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	ATP10A	NM_024490	exon5	c.847+2T>A	.	GAGCCTACCTGCG	.	81.0	36.0	86.0	0.0	.	270	.	.	.	none	.	.	PASS	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	hg19	16	30718524	30718524	+	Silent	SNP	G	G	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	SRCAP	NM_006662	exon5	c.G327T	p.R109R	GACTCGGATTGCT	.	90.0	34.0	77.0	0.0	.	298	.	.	.	none	.	.	PASS	Atlas-SNP
SRCAP	10847	hgsc.bcm.edu	hg19	16	30727477	30727477	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	SRCAP	NM_006662	exon17	c.T2584C	p.S862P	AGGCTCTCCAAGC	.	117.0	5.0	105.0	0.0	.	298	.	.	.	none	.	.	PASS	Atlas-SNP
LYZL6	57151	hgsc.bcm.edu	hg19	17	34261844	34261844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	LYZL6	NM_020426	exon4	c.G403A	p.G135S	GCCGGCCTGAACA	.	77.0	19.0	83.0	0.0	.	18	.	.	.	none	.	.	PASS	Atlas-SNP
MYCBPAP	84073	hgsc.bcm.edu	hg19	17	48600413	48600413	+	Silent	SNP	A	A	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	MYCBPAP	NM_032133	exon11	c.A1500T	p.R500R	CTGGCGACGGCAG	.	144.0	54.0	165.0	0.0	.	135	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF626	199777	hgsc.bcm.edu	hg19	19	20807580	20807580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	ZNF626	NM_001076675	exon4	c.C1103T	p.P368L	TTGTAGGGTTTCT	.	84.0	6.0	94.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF626	199777	hgsc.bcm.edu	hg19	19	20807581	20807581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	ZNF626	NM_001076675	exon4	c.C1102T	p.P368S	TGTAGGGTTTCTC	.	84.0	6.0	96.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF431	170959	hgsc.bcm.edu	hg19	19	21365595	21365595	+	Silent	SNP	G	G	A	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	ZNF431,colon,carcinoma,0,2	ZNF431	NM_133473	exon5	c.G489A	p.E163E	TAATGAGCTAAAC	.	98.0	16.0	68.0	2.0	.	71	.	.	.	none	.	.	PASS	Atlas-SNP
IFNL1	282618	hgsc.bcm.edu	hg19	19	39787490	39787490	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	.	NM_172140	exon2	c.T217G	p.F73V	CCTGTCTTCCCCG	.	120.0	5.0	99.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
CCM2L	140706	hgsc.bcm.edu	hg19	20	30617596	30617596	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	C20orf160_ENST00000300415,colon,carcinoma,0,2	.	NM_080625	exon8	c.G1293T	p.Q431H	TGCACAGGCCTGC	.	122.0	6.0	105.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
PHKA2	5256	hgsc.bcm.edu	hg19	X	18972370	18972370	+	Splice_Site	SNP	A	A	G	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	PHKA2	NM_000292	exon3	c.237+2T>C	.	ACTATTACCTGCT	.	95.0	4.0	73.0	0.0	.	122	.	.	.	none	.	.	PASS	Atlas-SNP
ND1	10625	hgsc.bcm.edu	hg19	MT	4117	4117	+	Silent	SNP	T	T	C	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	.	ENST00000361390	exon1	c.T811C	p.L271L	CTGTTCTTATGAA	.	7.0	6.0	0.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
ATP8	0	hgsc.bcm.edu	hg19	MT	8470	8470	+	Silent	SNP	A	A	G	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	.	ENST00000361851	exon1	c.A105G	p.L35L	CCACCTACCTCCC	.	11.0	11.0	0.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
BICD1	636	hgsc.bcm.edu	hg19	12	32491723	32491724	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-A4-8312-01A-11D-2396-08	TCGA-A4-8312-10A-01D-2396-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	f9961fbe-ca3b-4c52-b923-82430aef5a16	16e755f0-8784-4438-a9e3-0bc481bbaf86	.	BICD1	NM_001714	exon8	c.2573_2574del	p.858_858del	.	.	182.0	62.0	200.0	0.0	.	89	.	0.340659	0	none	.	.	PASS	Atlas-INDEL