Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm SSU72 29101 hgsc.bcm.edu hg19 1 1480325 1480325 + Silent SNP C C T rs138912153 alternate_allele TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . SSU72 NM_014188 exon3 c.G282A p.R94R TTCTGGCCGGGGC . 197.0 71.0 265.0 0.0 . 15 . . . alt C|1.000;A|0.000 . PASS Atlas-SNP CELA3B 23436 hgsc.bcm.edu hg19 1 22310247 22310247 + Silent SNP C C T novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . CELA3B NM_007352 exon5 c.C423T p.L141L CCAGCTCGCCTCA . 119.0 38.0 136.0 0.0 . 24 . . . none . . PASS Atlas-SNP ASAP3 55616 hgsc.bcm.edu hg19 1 23759922 23759922 + Missense_Mutation SNP T T A novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . ASAP3 NM_017707 exon21 c.A2123T p.E708V ACCTTCTCTTCCT . 90.0 47.0 119.0 0.0 . 65 . . . none . . PASS Atlas-SNP CSMD2 114784 hgsc.bcm.edu hg19 1 33985175 33985175 + Silent SNP T T A novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . CSMD2 NM_052896 exon69 c.A10407T p.T3469T GATGTCTGTGGGC . 235.0 90.0 330.0 0.0 . 946 . . . none . . PASS Atlas-SNP TTF2 8458 hgsc.bcm.edu hg19 1 117618867 117618867 + Missense_Mutation SNP C C G novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . TTF2 NM_003594 exon6 c.C1341G p.I447M ACAAATCCAGGAG . 48.0 19.0 75.0 0.0 . 92 . . . none . . PASS Atlas-SNP RRNAD1 51093 hgsc.bcm.edu hg19 1 156706431 156706431 + Missense_Mutation SNP T T C novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d RRNAD1,NS,carcinoma,0,1 RRNAD1 NM_001142560 exon7 c.T829C p.C277R TTTCCATGCTGAG . 135.0 52.0 154.0 0.0 . 39 . . . none . . PASS Atlas-SNP PRRC2C 23215 hgsc.bcm.edu hg19 1 171482181 171482181 + Missense_Mutation SNP C C G novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . . NM_015172 exon3 c.C154G p.R52G ATTTCACGGCGTA . 56.0 20.0 65.0 0.0 . . . . . none . . PASS Atlas-SNP TRIM11 81559 hgsc.bcm.edu hg19 1 228584695 228584695 + Missense_Mutation SNP G G T novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . TRIM11 NM_145214 exon5 c.C812A p.T271N CACACGGTCCTCA . 80.0 35.0 101.0 0.0 . 38 . . . none . . PASS Atlas-SNP SLC8A1 6546 hgsc.bcm.edu hg19 2 40405590 40405590 + Missense_Mutation SNP T T C novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d SLC8A1,NS,carcinoma,0,1 SLC8A1 NM_021097 exon2 c.A1852G p.K618E TGTTTTTCTCATA . 241.0 108.0 270.0 0.0 . 221 . . . none . . PASS Atlas-SNP FBXO11 80204 hgsc.bcm.edu hg19 2 48049436 48049436 + Missense_Mutation SNP A A C novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . FBXO11 NM_001190274 exon13 c.T1623G p.N541K TATAGAATTTCCC . 54.0 19.0 54.0 0.0 . 127 . . . none . . PASS Atlas-SNP VGLL4 9686 hgsc.bcm.edu hg19 3 11600049 11600049 + Missense_Mutation SNP G G A novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . VGLL4 NM_001128219 exon5 c.C872T p.S291F GAGGGGGAGTGAC . 101.0 18.0 97.0 0.0 . 47 . . . none . . PASS Atlas-SNP B4GALT4 8702 hgsc.bcm.edu hg19 3 118945881 118945881 + Silent SNP C C T novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . B4GALT4 NM_212543 exon5 c.G261A p.Q87Q CTTGCTCTGGCCT . 81.0 4.0 67.0 0.0 . 30 . . . none . . PASS Atlas-SNP ITGB5 3693 hgsc.bcm.edu hg19 3 124487860 124487860 + Missense_Mutation SNP C C T rs375122712 TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . ITGB5 NM_002213 exon12 c.G2017A p.V673M ACTCACCGATGGT . 101.0 29.0 71.0 0.0 . 66 . . . weak . . PASS Atlas-SNP FGFR3 2261 hgsc.bcm.edu hg19 4 1807787 1807787 + Missense_Mutation SNP A A G novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . FGFR3 NM_001163213 exon14 c.A1852G p.R618G ATCCACAGGGACC . 27.0 11.0 59.0 0.0 . 3320 . . . none . . PASS Atlas-SNP SLAIN2 57606 hgsc.bcm.edu hg19 4 48384849 48384849 + Missense_Mutation SNP T T A novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . SLAIN2 NM_020846 exon5 c.T1127A p.V376E GTAGAGTGTCCCC . 46.0 23.0 57.0 0.0 . 31 . . . none . . PASS Atlas-SNP TBCK 93627 hgsc.bcm.edu hg19 4 106967781 106967781 + Silent SNP G G A novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . TBCK NM_001163436 exon26 c.C2628T p.G876G ATTAATGCCACCA . 50.0 15.0 66.0 0.0 . 89 . . . none . . PASS Atlas-SNP JMY 133746 hgsc.bcm.edu hg19 5 78610483 78610483 + Missense_Mutation SNP C C T novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . JMY NM_152405 exon9 c.C2468T p.P823L CACCACCACCACC . 20.0 7.0 41.0 0.0 . 82 . . . none . . PASS Atlas-SNP RAD50 10111 hgsc.bcm.edu hg19 5 131953819 131953819 + Silent SNP A A G novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . RAD50 NM_005732 exon21 c.A3222G p.A1074A TTTGGCATTAGGG . 249.0 110.0 226.0 0.0 . 246 . . . none . . PASS Atlas-SNP ZNF346 23567 hgsc.bcm.edu hg19 5 176471535 176471535 + Splice_Site SNP G G C novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . ZNF346 NM_012279 exon4 c.517+1G>C . TGGAAGGTACTGG . 80.0 28.0 81.0 0.0 . 24 . . . none . . PASS Atlas-SNP ECI2 10455 hgsc.bcm.edu hg19 6 4117677 4117677 + Missense_Mutation SNP C C G novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . ECI2 NM_206836 exon9 c.G894C p.E298D AAGCATCTCTGTT . 83.0 29.0 105.0 0.0 . 59 . . . none . . PASS Atlas-SNP CCDC146 57639 hgsc.bcm.edu hg19 7 76866323 76866323 + Silent SNP C C G novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . CCDC146 NM_020879 exon3 c.C216G p.T72T GTATACCTTGCTG . 98.0 4.0 54.0 0.0 . 87 . . . none . . PASS Atlas-SNP HSF1 3297 hgsc.bcm.edu hg19 8 145535422 145535422 + Missense_Mutation SNP G G A rs201143946 bycluster TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . HSF1 NM_005526 exon8 c.G760A p.A254T CTCTACGCCCCTG . 86.0 4.0 77.0 0.0 . 29 . . . weak . . PASS Atlas-SNP AGTPBP1 23287 hgsc.bcm.edu hg19 9 88284416 88284416 + Missense_Mutation SNP T T G novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . AGTPBP1 NM_015239 exon8 c.A646C p.N216H TGGAATTCTTCTT . 65.0 26.0 63.0 0.0 . 128 . . . none . . PASS Atlas-SNP CCBL1 883 hgsc.bcm.edu hg19 9 131597888 131597888 + Missense_Mutation SNP T T A novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . CCBL1 NM_001122671 exon10 c.A914T p.Y305F ACAAAGTAGCTGC . 57.0 23.0 63.0 0.0 . 36 . . . none . . PASS Atlas-SNP NFKB2 4791 hgsc.bcm.edu hg19 10 104158555 104158555 + Missense_Mutation SNP G G A rs45580031 alternate_allele TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . NFKB2 NM_001077494 exon12 c.G1051A p.G351R CCCTTCGGGGGTG . 35.0 16.0 54.0 0.0 . 48 . . . alt G|0.993;C|0.007 . PASS Atlas-SNP CTSC 1075 hgsc.bcm.edu hg19 11 88045694 88045694 + Missense_Mutation SNP G G C novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . CTSC NM_001814 exon3 c.C347G p.T116S CAGTAAGTGGTCA . 283.0 119.0 316.0 0.0 . 46 . . . none . . PASS Atlas-SNP NELL2 4753 hgsc.bcm.edu hg19 12 44915902 44915902 + Missense_Mutation SNP G G C novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d NELL2_ENST00000437801,rectum,carcinoma,0,2 NELL2 NM_001145107 exon19 c.C2206G p.L736V AAAAAAGATCAAC . 50.0 2.0 76.0 0.0 . 286 . . . none . . PASS Atlas-SNP DIP2B 57609 hgsc.bcm.edu hg19 12 51102296 51102296 + Missense_Mutation SNP C C A novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . DIP2B NM_173602 exon22 c.C2600A p.P867H AAAGACCTGATGC . 17.0 9.0 15.0 0.0 . 167 . . . none . . PASS Atlas-SNP LETMD1 25875 hgsc.bcm.edu hg19 12 51450186 51450186 + Silent SNP G G A novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . LETMD1 NM_001243689 exon7 c.G855A p.L285L CTTGTTGAGACAT . 171.0 71.0 230.0 0.0 . 33 . . . none . . PASS Atlas-SNP PTPN11 5781 hgsc.bcm.edu hg19 12 112892458 112892458 + Silent SNP T T C rs78376169 bycluster TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d PTPN11,NS,carcinoma,0,2 PTPN11 NM_080601 exon5 c.T616C p.L206L GAAACATTGGGTA . 58.0 4.0 64.0 0.0 . 623 . . . weak . . PASS Atlas-SNP TDRD3 81550 hgsc.bcm.edu hg19 13 61034625 61034625 + Missense_Mutation SNP G G A novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . TDRD3 NM_001146070 exon4 c.G304A p.G102S ACTGATGGTCATA . 111.0 23.0 89.0 0.0 . 123 . . . none . . PASS Atlas-SNP RALGAPA1 253959 hgsc.bcm.edu hg19 14 36104756 36104756 + Missense_Mutation SNP G G C novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . RALGAPA1 NM_194301 exon31 c.C4207G p.P1403A TTAGAGGTAAGGC . 33.0 15.0 51.0 0.0 . 289 . . . none . . PASS Atlas-SNP DUOXA2 405753 hgsc.bcm.edu hg19 15 45410080 45410080 + Missense_Mutation SNP C C A novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . DUOXA2 NM_207581 exon6 c.C936A p.D312E CCCAGACTTAAAA . 113.0 48.0 140.0 0.0 . 38 . . . none . . PASS Atlas-SNP MYO9A 4649 hgsc.bcm.edu hg19 15 72172105 72172105 + Missense_Mutation SNP T T C novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . MYO9A NM_006901 exon30 c.A5696G p.E1899G CGAAATTCCTTCA . 76.0 35.0 88.0 0.0 . 203 . . . none . . PASS Atlas-SNP TMEM204 79652 hgsc.bcm.edu hg19 16 1604905 1604905 + Missense_Mutation SNP A A T novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . TMEM204 NM_024600 exon3 c.A559T p.I187F ATGCTCATCTGGA . 85.0 23.0 74.0 0.0 . 29 . . . none . . PASS Atlas-SNP SCNN1B 6338 hgsc.bcm.edu hg19 16 23387095 23387095 + Missense_Mutation SNP C C T rs372303239 TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . SCNN1B NM_000336 exon8 c.C1189T p.R397C ATGATCCGTAACT . 179.0 42.0 124.0 0.0 . 81 . . . weak . . PASS Atlas-SNP ELMO3 79767 hgsc.bcm.edu hg19 16 67236622 67236622 + Silent SNP T T A novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . ELMO3 NM_024712 exon15 c.T1650A p.T550T GCTCACTTATGGG . 69.0 44.0 91.0 0.0 . 41 . . . none . . PASS Atlas-SNP TEKT1 83659 hgsc.bcm.edu hg19 17 6703554 6703554 + Splice_Site SNP C C A novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . TEKT1 NM_053285 exon9 c.1050-1G>T . TTCAATCTAGGAG . 101.0 29.0 82.0 0.0 . 49 . . . none . . PASS Atlas-SNP RAI1 10743 hgsc.bcm.edu hg19 17 17701717 17701717 + Missense_Mutation SNP G G A novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . RAI1 NM_030665 exon3 c.G5455A p.A1819T GGGGAGGCCCAGG . 26.0 17.0 37.0 0.0 . 121 . . . none . . PASS Atlas-SNP ALDH3A2 224 hgsc.bcm.edu hg19 17 19566808 19566808 + Missense_Mutation SNP A A G novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . ALDH3A2 NM_001031806 exon7 c.A1103G p.H368R ATAACCATAAGGT . 82.0 37.0 78.0 0.0 . 41 . . . none . . PASS Atlas-SNP TAF15 8148 hgsc.bcm.edu hg19 17 34171754 34171754 + Missense_Mutation SNP G G A novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . TAF15 NM_139215 exon15 c.G1451A p.G484D ATCGAGGTGGCTA . 36.0 17.0 21.0 0.0 . 46 . . . none . . PASS Atlas-SNP HELZ 9931 hgsc.bcm.edu hg19 17 65074431 65074431 + Silent SNP G G A novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . HELZ NM_014877 exon33 c.C5766T p.L1922L CTGGAAGAGAGAC . 124.0 35.0 128.0 0.0 . 160 . . . none . . PASS Atlas-SNP SMCHD1 23347 hgsc.bcm.edu hg19 18 2718194 2718194 + Nonsense_Mutation SNP C C T novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . SMCHD1 NM_015295 exon18 c.C2299T p.Q767X ATTAGTCAACATG . 46.0 19.0 46.0 0.0 . 88 . . . none . . PASS Atlas-SNP TCF4 6925 hgsc.bcm.edu hg19 18 52921812 52921812 + Silent SNP A A G novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . TCF4 NM_001243226 exon16 c.T1572C p.I524I AGGTCCAATGATT . 53.0 22.0 52.0 0.0 . 178 . . . none . . PASS Atlas-SNP MUC16 94025 hgsc.bcm.edu hg19 19 9056220 9056220 + Missense_Mutation SNP G G C novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . MUC16 NM_024690 exon3 c.C31226G p.T10409R GTCACTGTTCCCA . 246.0 94.0 268.0 0.0 . 4315 . . . none . . PASS Atlas-SNP CHERP 10523 hgsc.bcm.edu hg19 19 16640580 16640580 + Silent SNP T T C novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d CHERP,NS,carcinoma,0,2 CHERP NM_006387 exon8 c.A1008G p.Q336Q CTGCTGTTGCTGC . 38.0 2.0 36.0 1.0 . 70 . . . none . . PASS Atlas-SNP ZNF93 81931 hgsc.bcm.edu hg19 19 20044771 20044771 + Missense_Mutation SNP C C T novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . ZNF93 NM_031218 exon4 c.C1007T p.T336I TTCATACTGGAGA . 53.0 21.0 53.0 0.0 . 81 . . . none . . PASS Atlas-SNP ZNF585A 199704 hgsc.bcm.edu hg19 19 37642653 37642653 + Missense_Mutation SNP C C A novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . ZNF585A NM_199126 exon6 c.G1983T p.K661N GTAAGGCTTCTCT . 106.0 46.0 153.0 0.0 . 117 . . . none . . PASS Atlas-SNP SBF1 6305 hgsc.bcm.edu hg19 22 50903300 50903300 + Missense_Mutation SNP G G A novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . SBF1 NM_002972 exon13 c.C1379T p.P460L CGCTGGGGGTGGT . 68.0 25.0 78.0 0.0 . 211 . . . none . . PASS Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179429832 179429834 + In_Frame_Del DEL AAT AAT - novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 AAT AAT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . TTN NM_001267550 exon326 c.81026_81028del p.27009_27010del . . 138.0 58.0 158.0 0.0 . 18412 . 0.42029 0 none . . PASS Atlas-INDEL ADAM7 8756 hgsc.bcm.edu hg19 8 24339727 24339728 + Frame_Shift_Ins INS - - TA novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . ADAM7 NM_003817 exon9 c.778_779insTA p.L260fs . . 101.0 27.0 57.0 0.0 . 165 . 0.267327 0 none . . PASS Atlas-INDEL ASNS 440 hgsc.bcm.edu hg19 7 97482647 97482647 + Frame_Shift_Del DEL C C - novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . ASNS NM_001673 exon11 c.1291delT p.S431fs . . 109.0 25.0 72.0 0.0 . 97 . 0.229358 0 none . . PASS Atlas-INDEL SMG5 23381 hgsc.bcm.edu hg19 1 156221203 156221203 + Frame_Shift_Del DEL G G - novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . SMG5 NM_015327 exon20 c.2820delA p.A940fs . . 197.0 69.0 226.0 0.0 . 98 . 0.350254 0 none . . PASS Atlas-INDEL AMPH 273 hgsc.bcm.edu hg19 7 38431574 38431574 + Frame_Shift_Del DEL A A - novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . AMPH NM_001635 exon19 c.1654delG p.E552fs . . 90.0 55.0 85.0 0.0 . 157 . 0.611111 0 none . . PASS Atlas-INDEL SUPT16H 11198 hgsc.bcm.edu hg19 14 21821646 21821648 + Frame_Shift_Del DEL CCT CCT - novel TCGA-A4-8630-01A-11D-2396-08 TCGA-A4-8630-10A-01D-2396-08 CCT CCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 80f06506-7e60-402b-8286-dca976db7c76 72b037be-7e9f-4a16-8d05-ee2a4a58247d . SUPT16H NM_007192 exon25 c.2998_2998del p.1000_1000del . . 62.0 24.0 109.0 0.0 . 84 . 0.387097 0 none . . PASS Atlas-INDEL