Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
MOV10	4343	hgsc.bcm.edu	hg19	1	113236732	113236732	+	Silent	SNP	C	C	T	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	MOV10	NM_020963	exon8	c.C1233T	p.I411I	CCCCATCACATAT	.	101.0	26.0	97.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
SYCP1	6847	hgsc.bcm.edu	hg19	1	115488960	115488960	+	Silent	SNP	T	T	C	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	SYCP1	NM_003176	exon26	c.T2205C	p.Y735Y	ACTTTATAAGAGC	.	368.0	98.0	318.0	0.0	.	149	.	.	.	none	.	.	PASS	Atlas-SNP
CFHR5	81494	hgsc.bcm.edu	hg19	1	196952181	196952181	+	Silent	SNP	A	A	G	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	CFHR5	NM_030787	exon2	c.A225G	p.E75E	AGAAGAAGGATGG	.	209.0	53.0	234.0	0.0	.	150	.	.	.	none	.	.	PASS	Atlas-SNP
ARHGEF4	50649	hgsc.bcm.edu	hg19	2	131803640	131803640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	ARHGEF4	NM_015320	exon14	c.C1951A	p.Q651K	ACGCGCCAGAAGC	.	68.0	19.0	100.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
IRS1	3667	hgsc.bcm.edu	hg19	2	227661691	227661691	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	IRS1	NM_005544	exon1	c.A1764T	p.E588D	GTGCATTTCCAGA	.	58.0	17.0	48.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
MLH1	4292	hgsc.bcm.edu	hg19	3	37092015	37092015	+	Missense_Mutation	SNP	G	G	T	rs63750978	alternate_allele	TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	MLH1	NM_000249	exon19	c.G2142T	p.W714C	GAAGTGGACTGTG	.	65.0	18.0	71.0	0.0	.	226	.	.	.	alt	.	.	PASS	Atlas-SNP
DNAH1	25981	hgsc.bcm.edu	hg19	3	52397032	52397032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	DNAH1	NM_015512	exon32	c.A5116G	p.M1706V	GTGGCCATGATGG	.	96.0	33.0	80.0	0.0	.	534	.	.	.	none	.	.	PASS	Atlas-SNP
ANKRD17	26057	hgsc.bcm.edu	hg19	4	73986056	73986056	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	ANKRD17	NM_198889	exon21	c.3097-2A>G	.	CCAGTCTAAGTTT	.	92.0	4.0	81.0	0.0	.	214	.	.	.	none	.	.	PASS	Atlas-SNP
CENPE	1062	hgsc.bcm.edu	hg19	4	104064497	104064497	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	CENPE,NS,carcinoma,0,1	CENPE	NM_001813	exon34	c.G5212C	p.D1738H	GTTTATCAATAGT	.	351.0	72.0	314.0	1.0	.	253	.	.	.	none	.	.	PASS	Atlas-SNP
LNPEP	4012	hgsc.bcm.edu	hg19	5	96315035	96315035	+	Silent	SNP	G	G	A	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	LNPEP	NM_005575	exon2	c.G213A	p.E71E	TTATGAGTCATCA	.	96.0	26.0	121.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
AQPEP	0	hgsc.bcm.edu	hg19	5	115350221	115350221	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	.	NM_173800	exon16	c.A2447C	p.N816T	CAGAAAATGAGTA	.	57.0	19.0	66.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
BTN3A1	11119	hgsc.bcm.edu	hg19	6	26411792	26411792	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	BTN3A1	NM_007048	exon9	c.A1001G	p.K334R	GGAAAAAGGCCCT	.	92.0	4.0	105.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
OR2J2	26707	hgsc.bcm.edu	hg19	6	29141971	29141971	+	Missense_Mutation	SNP	C	C	T	rs371365216		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	OR2J2	NM_030905	exon1	c.C559T	p.R187C	CTTCTGCGTTTAT	.	188.0	27.0	172.0	0.0	.	51	.	.	.	weak	.	.	PASS	Atlas-SNP
GJB7	375519	hgsc.bcm.edu	hg19	6	87994224	87994224	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	GJB7	NM_198568	exon3	c.T407C	p.I136T	AAGCCAATTTCAA	.	110.0	32.0	91.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
CRHR2	1395	hgsc.bcm.edu	hg19	7	30702464	30702464	+	Splice_Site	SNP	C	C	T	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	CRHR2	NM_001202482	exon7	c.541-1G>A	.	CCAGACCTGTGTG	.	79.0	16.0	64.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
MUC17	140453	hgsc.bcm.edu	hg19	7	100692139	100692139	+	Silent	SNP	T	T	C	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	MUC17	NM_001040105	exon5	c.T12549C	p.T4183T	GGAGACTATCTCT	.	178.0	11.0	106.0	0.0	.	804	.	.	.	none	.	.	PASS	Atlas-SNP
SYPL1	6856	hgsc.bcm.edu	hg19	7	105752601	105752601	+	Silent	SNP	G	G	A	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	SYPL1	NM_006754	exon2	c.C108T	p.I36I	GACCTTGATGAAG	.	34.0	18.0	18.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
ADAM18	8749	hgsc.bcm.edu	hg19	8	39468142	39468142	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	ADAM18	NM_001190956	exon6	c.G439C	p.D147H	AATAATGATCCAA	.	379.0	86.0	403.0	0.0	.	169	.	.	.	none	.	.	PASS	Atlas-SNP
IFNA2	3440	hgsc.bcm.edu	hg19	9	21385222	21385222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	IFNA2	NM_000605	exon1	c.G107A	p.R36K	AAGGTCCTCCTGC	.	52.0	8.0	61.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
RC3H2	54542	hgsc.bcm.edu	hg19	9	125612089	125612089	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	RC3H2	NM_001100588	exon21	c.A3393C	p.K1131N	AATTGTTTTTTGC	.	125.0	39.0	144.0	0.0	.	150	.	.	.	none	.	.	PASS	Atlas-SNP
KAZALD1	81621	hgsc.bcm.edu	hg19	10	102824381	102824381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	KAZALD1	NM_030929	exon4	c.G796T	p.A266S	GCCCCTGCTAGCT	.	42.0	7.0	34.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
PPRC1	23082	hgsc.bcm.edu	hg19	10	103900008	103900008	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	PPRC1	NM_015062	exon5	c.A1743T	p.Q581H	TGCCCAAGCCAGC	.	135.0	28.0	112.0	0.0	.	151	.	.	.	none	.	.	PASS	Atlas-SNP
PRDX5	25824	hgsc.bcm.edu	hg19	11	64085710	64085710	+	Missense_Mutation	SNP	C	C	T	rs368539290		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	PRDX5	NM_181651	exon1	c.C23T	p.A8V	TGTGCGCCCTGAG	.	67.0	24.0	91.0	0.0	.	16	.	.	.	weak	.	.	PASS	Atlas-SNP
SYVN1	84447	hgsc.bcm.edu	hg19	11	64897359	64897359	+	Silent	SNP	C	C	T	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	SYVN1	NM_172230	exon14	c.G1437A	p.A479A	AAAGCCCGCAGGG	.	27.0	7.0	41.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
HEPHL1	341208	hgsc.bcm.edu	hg19	11	93796840	93796840	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	HEPHL1	NM_001098672	exon3	c.G582T	p.K194N	CCCAAAGGACATC	.	91.0	24.0	99.0	0.0	.	144	.	.	.	none	.	.	PASS	Atlas-SNP
LIMA1	51474	hgsc.bcm.edu	hg19	12	50594621	50594621	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	LIMA1	NM_016357	exon7	c.A911G	p.E304G	TTTTGCTCCATTT	.	91.0	19.0	90.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
KRT3	3850	hgsc.bcm.edu	hg19	12	53183951	53183951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	KRT3,rectum,carcinoma,0,2	KRT3	NM_057088	exon9	c.G1762A	p.G588S	CAAAGCCGCTGCC	.	68.0	13.0	36.0	0.0	.	65	.	.	.	none	.	.	PASS	Atlas-SNP
ANO4	121601	hgsc.bcm.edu	hg19	12	101514351	101514351	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	ANO4	NM_178826	exon25	c.T2519G	p.L840R	ACACACTGCAGTT	.	182.0	48.0	178.0	0.0	.	183	.	.	.	none	.	.	PASS	Atlas-SNP
ACIN1	22985	hgsc.bcm.edu	hg19	14	23549896	23549896	+	Silent	SNP	C	C	T	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	ACIN1	NM_001164814	exon6	c.G822A	p.E274E	CTCCTCCTCTTCT	.	129.0	7.0	126.0	0.0	.	147	.	.	.	none	.	.	PASS	Atlas-SNP
PCNX	22990	hgsc.bcm.edu	hg19	14	71572155	71572155	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	PCNX	NM_014982	exon33	c.T6299C	p.L2100P	CAACACTAGGTAA	.	75.0	13.0	90.0	0.0	.	198	.	.	.	none	.	.	PASS	Atlas-SNP
VWA9	81556	hgsc.bcm.edu	hg19	15	65892192	65892192	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	VWA9	NM_001207058	exon4	c.C355G	p.R119G	CACTTCGTTGATT	.	120.0	34.0	79.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
RASGRF1	5923	hgsc.bcm.edu	hg19	15	79265658	79265658	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	RASGRF1	NM_002891	exon26	c.C3647G	p.S1216C	ATCTTGGAGAAGT	.	50.0	14.0	49.0	0.0	.	168	.	.	.	none	.	.	PASS	Atlas-SNP
TELO2	9894	hgsc.bcm.edu	hg19	16	1550652	1550652	+	Silent	SNP	G	G	A	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	TELO2	NM_016111	exon9	c.G1233A	p.E411E	GGCAGAGGTCGTT	.	120.0	23.0	89.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
TELO2	9894	hgsc.bcm.edu	hg19	16	1550653	1550653	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	TELO2	NM_016111	exon9	c.G1234T	p.V412F	GCAGAGGTCGTTA	.	120.0	24.0	89.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
RBFOX1	54715	hgsc.bcm.edu	hg19	16	7703911	7703911	+	Silent	SNP	G	G	A	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	RBFOX1	NM_145891	exon9	c.G912A	p.R304R	CTTCAGGGCCGCG	.	14.0	6.0	19.0	0.0	.	341	.	.	.	none	.	.	PASS	Atlas-SNP
BFAR	51283	hgsc.bcm.edu	hg19	16	14758841	14758841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	BFAR	NM_016561	exon7	c.C1073T	p.T358I	ACTGGACATCACG	.	272.0	56.0	258.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
ABCC1	4363	hgsc.bcm.edu	hg19	16	16228223	16228223	+	Missense_Mutation	SNP	G	G	A	rs370672850	bycluster	TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	ABCC1	NM_004996	exon28	c.G3983A	p.R1328Q	TGGGGCGGACGGG	.	48.0	7.0	49.0	0.0	.	156	.	.	.	weak	.	.	PASS	Atlas-SNP
ITFG1	81533	hgsc.bcm.edu	hg19	16	47195736	47195736	+	Missense_Mutation	SNP	C	C	T	rs141409020		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	ITFG1	NM_030790	exon16	c.G1586A	p.R529Q	TGTTTTCGTATAG	.	118.0	19.0	95.0	0.0	.	49	.	.	.	weak	C|1.000;T|0.000	0.000	PASS	Atlas-SNP
RBL2	5934	hgsc.bcm.edu	hg19	16	53504377	53504377	+	Silent	SNP	C	C	T	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	RBL2	NM_005611	exon16	c.C2328T	p.S776S	AGGCTCCATCCAG	.	81.0	21.0	62.0	0.0	.	115	.	.	.	none	.	.	PASS	Atlas-SNP
ACACA	31	hgsc.bcm.edu	hg19	17	35620716	35620716	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	ACACA	NM_198834	exon11	c.G1201C	p.A401P	GGTCCGCTAAGAT	.	137.0	11.0	103.0	0.0	.	395	.	.	.	none	.	.	PASS	Atlas-SNP
SYNRG	11276	hgsc.bcm.edu	hg19	17	35946557	35946557	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	SYNRG	NM_001163544	exon4	c.A341C	p.D114A	TGCATGTCTGGAG	.	193.0	73.0	139.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
CPLX4	339302	hgsc.bcm.edu	hg19	18	56964141	56964141	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	CPLX4	NM_181654	exon3	c.A272G	p.N91S	ATTTGATTCTCAT	.	159.0	8.0	138.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
ATP9B	374868	hgsc.bcm.edu	hg19	18	77013436	77013436	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	ATP9B	NM_198531	exon12	c.T1163G	p.L388X	TGGCTTTAGTTGC	.	550.0	128.0	526.0	1.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
CPXM1	56265	hgsc.bcm.edu	hg19	20	2779177	2779177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	CPXM1	NM_001184699	exon3	c.C347A	p.P116H	AAAGGAGGACAGC	.	35.0	6.0	19.0	0.0	.	107	.	.	.	none	.	.	PASS	Atlas-SNP
RBBP8NL	140893	hgsc.bcm.edu	hg19	20	60988918	60988918	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	.	NM_080833	exon10	c.G1489C	p.G497R	TGGTCCCCTTGGT	.	110.0	50.0	106.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
DIDO1	11083	hgsc.bcm.edu	hg19	20	61513486	61513486	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	DIDO1	NM_001193369	exon16	c.A3822T	p.K1274N	CAGCACTTTTAGC	.	90.0	42.0	78.0	0.0	.	321	.	.	.	none	.	.	PASS	Atlas-SNP
KLHL34	257240	hgsc.bcm.edu	hg19	X	21674429	21674429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	KLHL34	NM_153270	exon1	c.T1478C	p.L493P	TCCCGGAGGCTGC	.	52.0	17.0	55.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
UTP14A	10813	hgsc.bcm.edu	hg19	X	129058817	129058817	+	Silent	SNP	G	G	A	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	UTP14A	NM_006649	exon12	c.G1395A	p.Q465Q	ATCTCAGAAATTG	.	102.0	55.0	83.0	0.0	.	74	.	.	.	none	.	.	PASS	Atlas-SNP
GTF3C1	2975	hgsc.bcm.edu	hg19	16	27561107	27561108	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	GTF3C1	NM_001520	exon1	c.105_106insT	p.F35fs	.	.	140.0	65.0	97.0	0.0	.	210	.	0.464286	0	none	.	.	PASS	Atlas-Indel,Pindel
PIK3C2B	5287	hgsc.bcm.edu	hg19	1	204433195	204433198	+	Frame_Shift_Del	DEL	CATT	CATT	-	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	CATT	CATT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	PIK3C2B	NM_002646	exon6	c.1253_1256del	p.418_419del	.	.	69.0	12.0	63.0	0.0	.	142	.	0.173913	0	none	.	.	PASS	Atlas-Indel,Pindel
IL18	3606	hgsc.bcm.edu	hg19	11	112019383	112019384	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	IL18	NM_001562	exon5	c.303_304del	p.101_102del	.	.	144.0	39.0	172.0	0.0	.	10	.	0.270833	0	none	.	.	PASS	Atlas-Indel,Pindel
OR9A4	130075	hgsc.bcm.edu	hg19	7	141619202	141619203	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	OR9A4,NS,carcinoma,0,1	OR9A4	NM_001001656	exon1	c.527_528insT	p.N176fs	.	.	137.0	13.0	86.0	0.0	.	58	.	0.0948905	0	none	.	.	PASS	Atlas-Indel,Pindel
LIMA1	51474	hgsc.bcm.edu	hg19	12	50571415	50571415	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	LIMA1,NS,carcinoma,0,1	LIMA1	NM_001113546	exon11	c.1716delC	p.V572fs	.	.	138.0	51.0	116.0	0.0	.	67	.	0.369565	0	none	.	.	PASS	Atlas-Indel,Pindel
ATXN2	6311	hgsc.bcm.edu	hg19	12	111951273	111951273	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	ATXN2	NM_002973	exon11	c.1927delA	p.I643fs	.	.	126.0	24.0	95.0	0.0	.	99	.	0.190476	0	none	.	.	PASS	Atlas-Indel,Pindel
NLRP1	22861	hgsc.bcm.edu	hg19	17	5424855	5424865	+	Frame_Shift_Del	DEL	AGCAGTCACTT	AGCAGTCACTT	-	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	AGCAGTCACTT	AGCAGTCACTT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	NLRP1	NM_001033053	exon13	c.3775_3785del	p.1259_1262del	.	.	76.0	10.0	51.0	0.0	.	358	.	0.131579	0	none	.	.	PASS	Atlas-INDEL
ZNF287	57336	hgsc.bcm.edu	hg19	17	16455883	16455885	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	GAA	GAA	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	ZNF287	NM_020653	exon6	c.1572_1574del	p.524_525del	.	.	233.0	32.0	165.0	0.0	.	60	.	0.137339	0	none	.	.	PASS	Atlas-Indel,Pindel
EIF4A2	1974	hgsc.bcm.edu	hg19	3	186505347	186505348	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	EIF4A2	NM_001967	exon9	c.973_974insA	p.R325fs	.	.	200.0	28.0	174.0	0.0	.	55	.	0.14	0	none	.	.	PASS	Atlas-Indel,Pindel
OR2T4	127074	hgsc.bcm.edu	hg19	1	248524967	248524969	+	In_Frame_Del	DEL	ATG	ATG	-	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	ATG	ATG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	OR2T4	NM_001004696	exon1	c.84_86del	p.28_29del	.	.	15.0	14.0	11.0	0.0	.	126	.	0.933333	0	none	.	.	PASS	Atlas-INDEL
ALDOB	229	hgsc.bcm.edu	hg19	9	104187772	104187773	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	ALDOB	NM_000035	exon7	c.762_763insT	p.V254fs	.	.	110.0	26.0	100.0	0.0	.	69	.	0.236364	0	none	.	.	PASS	Atlas-Indel,Pindel
DHX8	1659	hgsc.bcm.edu	hg19	17	41584425	41584426	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	DHX8	NM_004941	exon13	c.1782_1783del	p.594_595del	.	.	80.0	12.0	52.0	0.0	.	98	.	0.15	0	none	.	.	PASS	Atlas-Indel,Pindel
SUCLA2	8803	hgsc.bcm.edu	hg19	13	48528276	48528276	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	SUCLA2	NM_003850	exon8	c.1107delG	p.K369fs	.	.	140.0	15.0	136.0	0.0	.	40	.	0.107	.	none	.	.	PASS	Pindel
KLHL15	80311	hgsc.bcm.edu	hg19	X	24024135	24024157	+	Frame_Shift_Del	DEL	AGCAAAACCGGATATTCTGAATG	AGCAAAACCGGATATTCTGAATG	-	novel		TCGA-A4-A7UZ-01A-12D-A34Z-10	TCGA-A4-A7UZ-10A-01D-A34Z-10	AGCAAAACCGGATATTCTGAATG	AGCAAAACCGGATATTCTGAATG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	991be3fd-4490-49c9-8019-27879e3192bd	fc283c2e-af56-4460-b252-9f1dc8940a6e	.	KLHL15	NM_030624	exon3	c.655_677del	p.219_226del	.	.	66.0	12.0	77.0	0.0	.	50	.	0.182	.	none	.	.	PASS	Pindel