Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
MEGF6	1953	hgsc.bcm.edu	hg19	1	3425692	3425692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	MEGF6	NM_001409	exon12	c.C1475T	p.A492V	TCATCGGCCCCGA	.	56.0	13.0	65.0	0.0	.	91	.	.	.	none	.	.	PASS	Atlas-SNP
MYCN	4613	hgsc.bcm.edu	hg19	2	16085781	16085781	+	Silent	SNP	C	C	T	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	MYCN	NM_005378	exon3	c.C957T	p.I319I	GCTGATCCTCAAA	.	463.0	105.0	336.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
EIF2AK3	9451	hgsc.bcm.edu	hg19	2	88913362	88913362	+	Silent	SNP	T	T	C	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	EIF2AK3	NM_004836	exon2	c.A318G	p.V106V	GATAATTACTAAT	.	29.0	13.0	33.0	0.0	.	160	.	.	.	none	.	.	PASS	Atlas-SNP
RANBP2	5903	hgsc.bcm.edu	hg19	2	109399079	109399079	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	RANBP2	NM_006267	exon28	c.T9130G	p.L3044V	CAGAATTTAATGA	.	86.0	20.0	93.0	0.0	.	488	.	.	.	none	.	.	PASS	Atlas-SNP
ZC3H6	376940	hgsc.bcm.edu	hg19	2	113079400	113079400	+	Silent	SNP	C	C	G	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	ZC3H6	NM_198581	exon8	c.C1044G	p.S348S	ATTTTCCCATGAT	.	162.0	49.0	136.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
CRYGD	1421	hgsc.bcm.edu	hg19	2	208988981	208988981	+	Missense_Mutation	SNP	G	G	A	rs200234608		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	CRYGD,NS,neuroblastoma,0,1	CRYGD	NM_006891	exon2	c.C107T	p.A36V	ACGCGCGCCGAGT	.	55.0	6.0	72.0	0.0	.	18	.	.	.	weak	G|0.998;A|0.002	0.002	PASS	Atlas-SNP
ZNF502	91392	hgsc.bcm.edu	hg19	3	44762365	44762365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	ZNF502	NM_001134440	exon4	c.G56T	p.G19V	TTTCAGGCTGGGT	.	62.0	29.0	58.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
QARS	5859	hgsc.bcm.edu	hg19	3	49135888	49135888	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	QARS	NM_005051	exon21	c.T1982A	p.L661Q	ACCTCCAGACTCT	.	123.0	38.0	84.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
PCBP4	57060	hgsc.bcm.edu	hg19	3	51994252	51994252	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	PCBP4	NM_033008	exon6	c.G340A	p.G114S	GTGAGCCACACTG	.	283.0	55.0	228.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
XRN1	54464	hgsc.bcm.edu	hg19	3	142031582	142031582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	XRN1	NM_019001	exon41	c.C4676T	p.S1559L	TGAGACGACGAAG	.	127.0	27.0	111.0	0.0	.	138	.	.	.	none	.	.	PASS	Atlas-SNP
HS3ST1	9957	hgsc.bcm.edu	hg19	4	11401255	11401255	+	Silent	SNP	C	C	T	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	HS3ST1	NM_005114	exon2	c.G375A	p.T125T	GGGCGACGTGAAA	.	162.0	7.0	178.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
CLCN3	1182	hgsc.bcm.edu	hg19	4	170625204	170625204	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	CLCN3	NM_001829	exon10	c.T1619C	p.I540T	GAAGGATTGTGGG	.	208.0	61.0	254.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
GFM2	84340	hgsc.bcm.edu	hg19	5	74018240	74018240	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	GFM2	NM_032380	exon20	c.A2175C	p.K725N	AACAACTTTGTTG	.	100.0	6.0	56.0	0.0	.	38	.	.	.	none	.	.	PASS	Atlas-SNP
HIST1H2AE	3012	hgsc.bcm.edu	hg19	6	26217562	26217562	+	Silent	SNP	G	G	A	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	HIST1H2AE,NS,carcinoma,0,1	HIST1H2AE	NM_021052	exon1	c.G360A	p.K120K	TAAGAAGACGGAG	.	144.0	92.0	145.0	0.0	.	25	.	.	.	none	.	.	PASS	Atlas-SNP
PNPLA1	285848	hgsc.bcm.edu	hg19	6	36238386	36238386	+	Silent	SNP	G	G	A	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	PNPLA1	NM_001145717	exon1	c.G150A	p.A50A	CTTTGCGGGGACA	.	101.0	85.0	74.0	0.0	.	92	.	.	.	none	.	.	PASS	Atlas-SNP
TBP	6908	hgsc.bcm.edu	hg19	6	170871004	170871004	+	Silent	SNP	G	G	A	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	TBP	NM_003194	exon3	c.G180A	p.Q60Q	GCAGCAGCAACAA	.	108.0	13.0	79.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF679	168417	hgsc.bcm.edu	hg19	7	63720609	63720609	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	ZNF679	NM_153363	exon3	c.C50A	p.T17K	TGTTGACATTCAG	.	159.0	9.0	135.0	0.0	.	80	.	.	.	none	.	.	PASS	Atlas-SNP
NUP205	23165	hgsc.bcm.edu	hg19	7	135282924	135282924	+	Missense_Mutation	SNP	G	G	A	rs375295025		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	NUP205	NM_015135	exon15	c.G2243A	p.R748H	GATTCCGTACAAG	.	100.0	31.0	82.0	0.0	.	198	.	.	.	weak	.	.	PASS	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	hg19	7	151859226	151859226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	MLL3	NM_170606	exon43	c.G11436T	p.E3812D	CTGCTTCTCAACT	.	40.0	7.0	26.0	0.0	.	1564	.	.	.	none	.	.	PASS	Atlas-SNP
KCNK9	51305	hgsc.bcm.edu	hg19	8	140630623	140630623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	KCNK9	NM_016601	exon2	c.G1003A	p.E335K	TCTCCTCGATCTT	.	213.0	89.0	193.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
ST6GALNAC4	27090	hgsc.bcm.edu	hg19	9	130674884	130674884	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	ST6GALNAC4	NM_175039	exon4	c.G274A	p.A92T	TCTCAGCACCCAG	.	18.0	6.0	4.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
OR51S1	119692	hgsc.bcm.edu	hg19	11	4869479	4869479	+	Silent	SNP	A	A	T	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	OR51S1	NM_001004758	exon1	c.T960A	p.G320G	AGCACCACCCACC	.	110.0	22.0	92.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
C11orf45	219833	hgsc.bcm.edu	hg19	11	128772504	128772504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	C11orf45	NM_145013	exon4	c.G386A	p.R129H	CCCAGGCGGCCCT	.	67.0	30.0	74.0	0.0	.	14	.	.	.	none	.	.	PASS	Atlas-SNP
CD163	9332	hgsc.bcm.edu	hg19	12	7651490	7651490	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	CD163	NM_203416	exon4	c.C752T	p.A251V	TCCTCAGCATGAT	.	119.0	24.0	101.0	0.0	.	221	.	.	.	none	.	.	PASS	Atlas-SNP
PIK3C2G	5288	hgsc.bcm.edu	hg19	12	18478009	18478009	+	Silent	SNP	C	C	T	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	PIK3C2G	NM_004570	exon8	c.C1249T	p.L417L	TTCCACCTGAAAT	.	36.0	15.0	33.0	0.0	.	315	.	.	.	none	.	.	PASS	Atlas-SNP
DNAAF2	55172	hgsc.bcm.edu	hg19	14	50092296	50092296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	DNAAF2	NM_018139	exon3	c.C2478A	p.F826L	AAAACTGAATGCA	.	80.0	21.0	104.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
DYX1C1	161582	hgsc.bcm.edu	hg19	15	55731768	55731768	+	Silent	SNP	T	T	C	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	DYX1C1	NM_001033560	exon7	c.A795G	p.K265K	AGCTTGTTTGTGT	.	85.0	23.0	42.0	0.0	.	54	.	.	.	none	.	.	PASS	Atlas-SNP
ADCY9	115	hgsc.bcm.edu	hg19	16	4163953	4163953	+	Silent	SNP	G	G	A	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	ADCY9	NM_001116	exon2	c.C1491T	p.C497C	GATGCCGCAAAGG	.	194.0	138.0	152.0	0.0	.	151	.	.	.	none	.	.	PASS	Atlas-SNP
ADCY9	115	hgsc.bcm.edu	hg19	16	4164162	4164162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	ADCY9,NS,carcinoma,0,1	ADCY9	NM_001116	exon2	c.C1282T	p.R428C	ACAGGCGGTCGAA	.	126.0	23.0	106.0	0.0	.	151	.	.	.	none	.	.	PASS	Atlas-SNP
NDRG4	65009	hgsc.bcm.edu	hg19	16	58541744	58541744	+	Missense_Mutation	SNP	C	C	T	rs200391051	bycluster	TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	NDRG4,NS,malignant_melanoma,0,1	NDRG4	NM_001130487	exon11	c.C809T	p.T270M	CTGGAACGGTGCC	.	109.0	16.0	104.0	0.0	.	29	.	.	.	weak	C|0.999;T|0.001	0.001	PASS	Atlas-SNP
SMARCA4	6597	hgsc.bcm.edu	hg19	19	11129655	11129655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	SMARCA4,NS,lymphoid_neoplasm,0,3	SMARCA4	NM_003072	exon17	c.G2461A	p.E821K	GCGTACGAGTTTG	.	264.0	194.0	170.0	1.0	.	502	.	.	.	none	.	.	PASS	Atlas-SNP
GCDH	2639	hgsc.bcm.edu	hg19	19	13002761	13002761	+	Silent	SNP	C	C	T	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	GCDH	NM_013976	exon4	c.T244T	p.F82F	ATGCCTCGCATCC	.	144.0	22.0	131.0	0.0	.	76	.	.	.	none	.	.	PASS	Atlas-SNP
HAO1	54363	hgsc.bcm.edu	hg19	20	7894923	7894923	+	Missense_Mutation	SNP	G	G	A	rs200785017		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	HAO1,NS,carcinoma,0,3	HAO1	NM_017545	exon3	c.C433T	p.R145W	CCTGCCGCACTAG	.	304.0	74.0	212.0	0.0	.	71	.	.	.	weak	G|0.999;A|0.001	0.001	PASS	Atlas-SNP
BIK	638	hgsc.bcm.edu	hg19	22	43523734	43523734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	BIK	NM_001197	exon3	c.G193T	p.G65W	TGCATCGGGGACG	.	44.0	10.0	18.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
MAGEC1	9947	hgsc.bcm.edu	hg19	X	140996146	140996146	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	MAGEC1	NM_005462	exon4	c.G2956T	p.G986W	TCTGAGGGGTGTC	.	146.0	42.0	101.0	0.0	.	317	.	.	.	none	.	.	PASS	Atlas-SNP
GABRA3	2556	hgsc.bcm.edu	hg19	X	151532942	151532942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	GABRA3	NM_000808	exon2	c.G101A	p.R34Q	TCTTGTCGTCTTG	.	119.0	56.0	91.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
COX1	5742	hgsc.bcm.edu	hg19	MT	6233	6233	+	Silent	SNP	A	A	G	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	.	ENST00000361624	exon1	c.A330G	p.L110L	TCTCCTACTCCTG	.	21.0	8.0	2.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
COX2	5743	hgsc.bcm.edu	hg19	MT	8201	8201	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AL-A5DJ-01A-11D-A26P-10	TCGA-AL-A5DJ-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	b4f515ce-5bee-4e40-a66a-01f41e92181e	7c64233c-871d-4df4-8c4d-d60713a4ac1e	.	.	ENST00000361739	exon1	c.T616C	p.F206L	CACAGTTTCATGC	.	12.0	4.0	2.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP