Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
KDM1A	23028	hgsc.bcm.edu	hg19	1	23383993	23383993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	KDM1A	NM_001009999	exon8	c.G1007A	p.R336Q	GTGGACGAGTTGC	.	113.0	6.0	135.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
GNL2	29889	hgsc.bcm.edu	hg19	1	38042060	38042060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	GNL2	NM_013285	exon9	c.G1007A	p.C336Y	ACGTTGCAAACTT	.	69.0	24.0	91.0	0.0	.	58	.	.	.	none	.	.	PASS	Atlas-SNP
GLIS1	148979	hgsc.bcm.edu	hg19	1	53995548	53995548	+	Silent	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	GLIS1	NM_147193	exon4	c.G873A	p.P291P	CAGGTACGGCTTC	.	52.0	27.0	45.0	0.0	.	52	.	.	.	none	.	.	PASS	Atlas-SNP
SAMD13	148418	hgsc.bcm.edu	hg19	1	84768963	84768963	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SAMD13	NM_001010971	exon2	c.G88T	p.V30L	GTCGGTGTAAAAA	.	53.0	22.0	69.0	0.0	.	5	.	.	.	none	.	.	PASS	Atlas-SNP
CD58	965	hgsc.bcm.edu	hg19	1	117078689	117078689	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CD58	NM_001144822	exon3	c.A526G	p.K176E	CCATCTTAAAATA	.	48.0	16.0	56.0	0.0	.	40	.	.	.	none	.	.	PASS	Atlas-SNP
POGZ	23126	hgsc.bcm.edu	hg19	1	151381040	151381040	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	POGZ	NM_015100	exon14	c.C2079T	p.S693S	CCCTCGGGAAGCC	.	48.0	17.0	75.0	0.0	.	211	.	.	.	none	.	.	PASS	Atlas-SNP
VHLL	391104	hgsc.bcm.edu	hg19	1	156268771	156268771	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	VHLL	NM_001004319	exon1	c.G210A	p.W70X	GTTGAGCCACACA	.	63.0	17.0	98.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
CRB1	23418	hgsc.bcm.edu	hg19	1	197237545	197237545	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CRB1	NM_001257966	exon1	c.G3T	p.M1I	GACCATGGCACTT	.	72.0	25.0	93.0	0.0	.	284	.	.	.	none	.	.	PASS	Atlas-SNP
KLHL12	59349	hgsc.bcm.edu	hg19	1	202866048	202866048	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	KLHL12	NM_021633	exon7	c.C873T	p.S291S	CTGCTGGCTTCCA	.	116.0	47.0	106.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
C4BPB	725	hgsc.bcm.edu	hg19	1	207271520	207271520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	C4BPB	NM_001017365	exon6	c.C529A	p.Q177K	CAGGAGCAGCAAT	.	78.0	26.0	102.0	0.0	.	19	.	.	.	none	.	.	PASS	Atlas-SNP
RPS6KC1	26750	hgsc.bcm.edu	hg19	1	213251150	213251150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	RPS6KC1	NM_012424	exon3	c.T254C	p.I85T	AAGGAATAGTGTT	.	84.0	44.0	129.0	0.0	.	114	.	.	.	none	.	.	PASS	Atlas-SNP
TLR5	7100	hgsc.bcm.edu	hg19	1	223286361	223286361	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TLR5	NM_003268	exon6	c.C13T	p.L5L	GGTCCAGGTGGTC	.	154.0	57.0	210.0	0.0	.	86	.	.	.	none	.	.	PASS	Atlas-SNP
TRIB2	28951	hgsc.bcm.edu	hg19	2	12858616	12858616	+	Silent	SNP	C	C	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TRIB2	NM_021643	exon1	c.C183A	p.I61I	TTGTATCGGGAAA	.	73.0	29.0	97.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
IL1RL2	8808	hgsc.bcm.edu	hg19	2	102805602	102805602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	IL1RL2	NM_003854	exon3	c.G125A	p.C42Y	TTAATTGTACATT	.	49.0	18.0	38.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
R3HDM1	23518	hgsc.bcm.edu	hg19	2	136393707	136393707	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	R3HDM1	NM_015361	exon11	c.G857T	p.R286I	AAGAAAGAGAAGA	.	84.0	26.0	141.0	0.0	.	84	.	.	.	none	.	.	PASS	Atlas-SNP
SCN1A	6323	hgsc.bcm.edu	hg19	2	166848746	166848746	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SCN1A	NM_001165963	exon26	c.T5039A	p.V1680D	AACATGACTAGGA	.	268.0	89.0	314.0	0.0	.	641	.	.	.	none	.	.	PASS	Atlas-SNP
NFE2L2	4780	hgsc.bcm.edu	hg19	2	178098806	178098806	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	NFE2L2,NS,carcinoma,0,8	NFE2L2	NM_006164	exon2	c.C239A	p.T80K	TCACCTGTCTCTT	.	65.0	20.0	63.0	0.0	.	225	.	.	.	none	.	.	PASS	Atlas-SNP
CHPF	79586	hgsc.bcm.edu	hg19	2	220404816	220404816	+	Silent	SNP	A	A	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CHPF	NM_024536	exon4	c.T1617A	p.A539A	TGCCGCAGCATCA	.	18.0	9.0	51.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
COL6A3	1293	hgsc.bcm.edu	hg19	2	238259816	238259816	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	COL6A3	NM_004369	exon27	c.G6773C	p.G2258A	GGAGCACCAGCGG	.	93.0	28.0	90.0	0.0	.	608	.	.	.	none	.	.	PASS	Atlas-SNP
ILKAP	80895	hgsc.bcm.edu	hg19	2	239093869	239093869	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ILKAP	NM_030768	exon6	c.T485C	p.F162S	GCAGCAAATTTTG	.	125.0	33.0	103.0	0.0	.	42	.	.	.	none	.	.	PASS	Atlas-SNP
ABHD5	51099	hgsc.bcm.edu	hg19	3	43744053	43744053	+	Silent	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ABHD5	NM_016006	exon3	c.T480C	p.A160A	GGCTGCTGCTTAC	.	199.0	46.0	188.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
TRMT10C	54931	hgsc.bcm.edu	hg19	3	101284214	101284214	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	.	NM_017819	exon2	c.C589T	p.Q197X	GGTGCCCAGGCCA	.	50.0	16.0	42.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
LRCH3	84859	hgsc.bcm.edu	hg19	3	197592302	197592302	+	Missense_Mutation	SNP	C	C	G	rs201375313	alternate_allele	TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	LRCH3	NM_032773	exon16	c.C1725G	p.D575E	TGATGACAGACCT	.	154.0	41.0	125.0	0.0	.	96	.	.	.	alt	C|0.999;T|0.001	.	PASS	Atlas-SNP
KCTD8	386617	hgsc.bcm.edu	hg19	4	44450334	44450334	+	Silent	SNP	A	A	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	KCTD8	NM_198353	exon1	c.T207A	p.T69T	GGCCAAAGTACTG	.	33.0	16.0	44.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
AFF1	4299	hgsc.bcm.edu	hg19	4	88053423	88053423	+	Silent	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	AFF1	NM_001166693	exon19	c.C3174T	p.C1058C	TCATAGCATGCGT	.	118.0	34.0	131.0	0.0	.	102	.	.	.	none	.	.	PASS	Atlas-SNP
ADH4	127	hgsc.bcm.edu	hg19	4	100057629	100057629	+	Silent	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ADH4	NM_000670	exon5	c.C570A	p.I190I	ATTGTTGATTGCA	.	45.0	14.0	50.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1109	84162	hgsc.bcm.edu	hg19	4	123109188	123109188	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	KIAA1109	NM_015312	exon7	c.A766T	p.N256Y	CTTGAAAATGTTC	.	19.0	6.0	34.0	0.0	.	424	.	.	.	none	.	.	PASS	Atlas-SNP
SMARCA5	8467	hgsc.bcm.edu	hg19	4	144457751	144457751	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SMARCA5	NM_003601	exon11	c.A1415C	p.Y472S	CACCTTATACAAC	.	327.0	128.0	351.0	0.0	.	73	.	.	.	none	.	.	PASS	Atlas-SNP
CDH6	1004	hgsc.bcm.edu	hg19	5	31294229	31294229	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CDH6	NM_004932	exon3	c.C389A	p.A130D	CTCAAGCTATAAA	.	68.0	21.0	72.0	0.0	.	175	.	.	.	none	.	.	PASS	Atlas-SNP
SKP2	6502	hgsc.bcm.edu	hg19	5	36183992	36183992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SKP2	NM_032637	exon10	c.G1112A	p.C371Y	TCGGATGCCCTCA	.	155.0	7.0	131.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
DTWD2	285605	hgsc.bcm.edu	hg19	5	118183873	118183873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	DTWD2	NM_173666	exon5	c.G638A	p.R213Q	TGCATCCGAATTA	.	136.0	41.0	136.0	0.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
FAM13B	51306	hgsc.bcm.edu	hg19	5	137346798	137346798	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	FAM13B	NM_001101800	exon6	c.G589C	p.V197L	TGCTCACTATTTC	.	31.0	18.0	22.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
FAM71B	153745	hgsc.bcm.edu	hg19	5	156590131	156590131	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	FAM71B,NS,carcinoma,0,1	FAM71B	NM_130899	exon2	c.C1145T	p.T382I	TTGCTGGTCGTAA	.	51.0	11.0	30.0	0.0	.	145	.	.	.	none	.	.	PASS	Atlas-SNP
BTN2A1	11120	hgsc.bcm.edu	hg19	6	26458834	26458834	+	Splice_Site	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	BTN2A1	.	.	.	.	ACCCTAGGCCTCC	.	69.0	23.0	67.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
EHMT2	10919	hgsc.bcm.edu	hg19	6	31852467	31852467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	EHMT2	NM_006709	exon20	c.C2558T	p.T853I	AGGGGGGTGTCCC	.	68.0	28.0	104.0	0.0	.	45	.	.	.	none	.	.	PASS	Atlas-SNP
CUL9	23113	hgsc.bcm.edu	hg19	6	43184050	43184050	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CUL9	NM_015089	exon31	c.T6091C	p.S2031P	GCTCATTCCCACT	.	58.0	18.0	97.0	0.0	.	248	.	.	.	none	.	.	PASS	Atlas-SNP
COL10A1	1300	hgsc.bcm.edu	hg19	6	116441541	116441541	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	COL10A1	NM_000493	exon3	c.C1738A	p.Q580K	AATGCTGTTGCCT	.	78.0	21.0	76.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
SBDS	51119	hgsc.bcm.edu	hg19	7	66456178	66456178	+	Silent	SNP	G	G	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SBDS	NM_016038	exon4	c.C570G	p.L190L	TGGCTTGAGCTTT	.	95.0	20.0	77.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
ZSCAN25	221785	hgsc.bcm.edu	hg19	7	99219063	99219063	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	.	NM_145115	exon5	c.T455A	p.I152N	CAGGCATCCAGCT	.	169.0	66.0	108.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
MUC12	10071	hgsc.bcm.edu	hg19	7	100646199	100646199	+	Missense_Mutation	SNP	T	T	C	rs4632981		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	MUC12,NS,carcinoma,0,1	MUC12	NM_001164462	exon2	c.T12355C	p.F4119L	ACACACTTTTCTG	.	3.0	3.0	0.0	0.0	.	140	.	.	.	weak	C|1.000;|0.000	1.000	PASS	Atlas-SNP
AASS	10157	hgsc.bcm.edu	hg19	7	121769482	121769482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	AASS	NM_005763	exon3	c.C320T	p.A107V	AAAAATGCATAAG	.	50.0	18.0	47.0	0.0	.	123	.	.	.	none	.	.	PASS	Atlas-SNP
VIPR2	7434	hgsc.bcm.edu	hg19	7	158828654	158828654	+	Silent	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	VIPR2	NM_003382	exon8	c.A798G	p.L266L	GTCTTCTAAGTAG	.	144.0	68.0	59.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
MSR1	4481	hgsc.bcm.edu	hg19	8	16021617	16021617	+	Silent	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	MSR1	NM_138715	exon5	c.T774C	p.D258D	TTCCCAATCTTTC	.	55.0	13.0	77.0	0.0	.	140	.	.	.	none	.	.	PASS	Atlas-SNP
EYA1	2138	hgsc.bcm.edu	hg19	8	72182014	72182014	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	EYA1	NM_000503	exon11	c.C1011T	p.H337H	CAAGGAGTGGAAA	.	110.0	33.0	102.0	0.0	.	108	.	.	.	none	.	.	PASS	Atlas-SNP
FER1L6	654463	hgsc.bcm.edu	hg19	8	124989660	124989660	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	FER1L6	NM_001039112	exon10	c.C874T	p.R292X	TAGGGGCGAACCA	.	124.0	46.0	122.0	0.0	.	268	.	.	.	none	.	.	PASS	Atlas-SNP
PRUNE2	158471	hgsc.bcm.edu	hg19	9	79325026	79325026	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	PRUNE2	NM_015225	exon8	c.C2164T	p.Q722X	CAGGCTGACCAAA	.	69.0	36.0	98.0	0.0	.	331	.	.	.	none	.	.	PASS	Atlas-SNP
WNK2	65268	hgsc.bcm.edu	hg19	9	96079890	96079890	+	Missense_Mutation	SNP	C	C	T	rs377748076		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	WNK2	NM_006648	exon28	c.C6605T	p.P2202L	CCGCCCCGACCCT	.	18.0	5.0	60.0	0.0	.	277	.	.	.	weak	.	.	PASS	Atlas-SNP
TDRD7	23424	hgsc.bcm.edu	hg19	9	100227199	100227199	+	Silent	SNP	T	T	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TDRD7	NM_014290	exon8	c.T1518G	p.P506P	GAATCCTAAGATC	.	126.0	27.0	134.0	0.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
CTNNAL1	8727	hgsc.bcm.edu	hg19	9	111761412	111761412	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CTNNAL1	NM_003798	exon2	c.T266G	p.I89R	TTGGCTATAGCTT	.	54.0	14.0	44.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
CTNNAL1	8727	hgsc.bcm.edu	hg19	9	111761413	111761413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CTNNAL1	NM_003798	exon2	c.A265G	p.I89V	TGGCTATAGCTTC	.	55.0	14.0	44.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
ZBTB6	10773	hgsc.bcm.edu	hg19	9	125673886	125673886	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ZBTB6	NM_006626	exon2	c.A466G	p.N156D	CAGAATTTTCATC	.	24.0	6.0	21.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
PARG	8505	hgsc.bcm.edu	hg19	10	51028292	51028292	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	PARG	NM_003631	exon17	c.T2695A	p.Y899N	TGAAATAAACCAC	.	77.0	22.0	87.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
SMC3	9126	hgsc.bcm.edu	hg19	10	112361757	112361757	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SMC3	NM_005445	exon25	c.T2926A	p.L976I	ACAGAATTAAAGA	.	47.0	9.0	56.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
RAB11FIP2	22841	hgsc.bcm.edu	hg19	10	119798692	119798692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	RAB11FIP2	NM_014904	exon3	c.G1056T	p.E352D	CCTTTTCTCTCTT	.	57.0	17.0	67.0	0.0	.	39	.	.	.	none	.	.	PASS	Atlas-SNP
OR51E1	143503	hgsc.bcm.edu	hg19	11	4674486	4674486	+	Missense_Mutation	SNP	G	G	A	rs148787592	bycluster	TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	OR51E1,colon,carcinoma,-1,1	OR51E1	NM_152430	exon2	c.G730A	p.V244I	ACTTGCGTCTCTC	.	77.0	26.0	99.0	0.0	.	67	.	.	.	weak	G|1.000;A|0.000	0.000	PASS	Atlas-SNP
ZDHHC5	25921	hgsc.bcm.edu	hg19	11	57466844	57466844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ZDHHC5	NM_015457	exon11	c.G1936A	p.V646I	CCTGGTGTCTCTG	.	33.0	13.0	44.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
ARL2	402	hgsc.bcm.edu	hg19	11	64789247	64789247	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ARL2	NM_001667	exon5	c.G475A	p.A159T	TGCAGCGCCGTCA	.	25.0	12.0	49.0	0.0	.	11	.	.	.	none	.	.	PASS	Atlas-SNP
IL10RA	3587	hgsc.bcm.edu	hg19	11	117869943	117869943	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	IL10RA	NM_001558	exon7	c.G1324T	p.A442S	GCTGTGGCATTCC	.	63.0	18.0	107.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
FBXO33	254170	hgsc.bcm.edu	hg19	14	39871674	39871674	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	FBXO33	NM_203301	exon2	c.T641C	p.L214P	TGTTGTAGAACAC	.	20.0	6.0	34.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
L2HGDH	79944	hgsc.bcm.edu	hg19	14	50713788	50713788	+	Silent	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	L2HGDH	NM_024884	exon10	c.A1380G	p.R460R	TTCAAATCTTTGT	.	103.0	38.0	110.0	0.0	.	33	.	.	.	none	.	.	PASS	Atlas-SNP
VRTN	55237	hgsc.bcm.edu	hg19	14	74824279	74824279	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	VRTN	NM_018228	exon2	c.T793A	p.S265T	CCACTCTCATCGC	.	47.0	18.0	107.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
GALC	2581	hgsc.bcm.edu	hg19	14	88412007	88412007	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	GALC	NM_000153	exon14	c.T1560G	p.I520M	GTCTTCAATATTT	.	39.0	10.0	36.0	0.0	.	48	.	.	.	none	.	.	PASS	Atlas-SNP
CALM1	801	hgsc.bcm.edu	hg19	14	90870815	90870815	+	Silent	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CALM1	NM_006888	exon5	c.C378T	p.I126I	AATGATCAGAGAA	.	149.0	38.0	173.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
ATP10A	57194	hgsc.bcm.edu	hg19	15	25981205	25981205	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ATP10A	NM_024490	exon3	c.C738T	p.C246C	TCACATGCAGCCG	.	99.0	38.0	103.0	0.0	.	270	.	.	.	none	.	.	PASS	Atlas-SNP
SECISBP2L	9728	hgsc.bcm.edu	hg19	15	49293279	49293279	+	Silent	SNP	A	A	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SECISBP2L	NM_001193489	exon15	c.T2043G	p.V681V	ACAAAGAACCTGA	.	42.0	16.0	20.0	0.0	.	118	.	.	.	none	.	.	PASS	Atlas-SNP
ARL2BP	23568	hgsc.bcm.edu	hg19	16	57283687	57283687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ARL2BP	NM_012106	exon4	c.G216T	p.L72F	TTCTTTGGTAGAA	.	50.0	7.0	50.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
KCTD11	147040	hgsc.bcm.edu	hg19	17	7256621	7256621	+	Silent	SNP	C	C	T	rs79616684		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	KCTD11	NM_001002914	exon1	c.C360T	p.D120D	GGTGGACACCTTC	.	62.0	17.0	68.0	0.0	.	17	.	.	.	weak	C|0.500;T|0.500	0.500	PASS	Atlas-SNP
PEX12	5193	hgsc.bcm.edu	hg19	17	33904481	33904481	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	PEX12	NM_000286	exon2	c.T256G	p.F86V	CGTAAAAGTTTTC	.	37.0	11.0	27.0	0.0	.	36	.	.	.	none	.	.	PASS	Atlas-SNP
CDC6	990	hgsc.bcm.edu	hg19	17	38447445	38447445	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CDC6	NM_001254	exon3	c.A314G	p.K105R	CAATTAAGTCTCC	.	120.0	14.0	77.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
HDAC5	10014	hgsc.bcm.edu	hg19	17	42160014	42160014	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	HDAC5	NM_001015053	exon20	c.C2549G	p.A850G	GTGATGGCTACAG	.	176.0	51.0	129.0	0.0	.	67	.	.	.	none	.	.	PASS	Atlas-SNP
WNT9B	7484	hgsc.bcm.edu	hg19	17	44952592	44952592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	WNT9B	NM_003396	exon3	c.C460T	p.R154W	GAGAGCCGGCAGG	.	93.0	4.0	87.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
NOL11	25926	hgsc.bcm.edu	hg19	17	65739904	65739904	+	Missense_Mutation	SNP	G	G	A	rs370393293		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	NOL11	NM_015462	exon18	c.G2089A	p.E697K	TTTCGGGAGCTAC	.	36.0	9.0	17.0	0.0	.	48	.	.	.	weak	.	.	PASS	Atlas-SNP
TTR	7276	hgsc.bcm.edu	hg19	18	29178601	29178601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TTR	NM_000371	exon4	c.A407G	p.Y136C	ACTCCTATTCCAC	.	78.0	21.0	85.0	0.0	.	21	.	.	.	none	.	.	PASS	Atlas-SNP
C18orf21	83608	hgsc.bcm.edu	hg19	18	33558958	33558958	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	C18orf21	NM_031446	exon5	c.C652G	p.L218V	GGTGGACTTTTAA	.	54.0	17.0	57.0	0.0	.	15	.	.	.	none	.	.	PASS	Atlas-SNP
TSHZ1	10194	hgsc.bcm.edu	hg19	18	72999468	72999468	+	Silent	SNP	C	C	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TSHZ1	NM_005786	exon2	c.C1971A	p.A657A	GAAGGCCAAAAAG	.	102.0	35.0	136.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
SUGP1	57794	hgsc.bcm.edu	hg19	19	19427332	19427332	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SUGP1	NM_172231	exon2	c.G105C	p.Q35H	CTCTTCCTGGTGA	.	99.0	30.0	124.0	0.0	.	63	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF567	163081	hgsc.bcm.edu	hg19	19	37210700	37210700	+	Silent	SNP	T	T	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ZNF567	NM_152603	exon4	c.T981A	p.T327T	GAGAACTCACACG	.	84.0	33.0	91.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF567	163081	hgsc.bcm.edu	hg19	19	37210701	37210701	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ZNF567	NM_152603	exon4	c.C982T	p.H328Y	AGAACTCACACGG	.	82.0	32.0	89.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
ZNF569	148266	hgsc.bcm.edu	hg19	19	37904781	37904781	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ZNF569	NM_152484	exon6	c.A779G	p.H260R	CTTTGATGTCTAA	.	17.0	9.0	16.0	0.0	.	101	.	.	.	none	.	.	PASS	Atlas-SNP
RABAC1	10567	hgsc.bcm.edu	hg19	19	42461228	42461228	+	Silent	SNP	G	G	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	RABAC1	NM_006423	exon4	c.C411A	p.G137G	GGAGATGCCTCCA	.	143.0	54.0	281.0	0.0	.	6	.	.	.	none	.	.	PASS	Atlas-SNP
CCDC155	147872	hgsc.bcm.edu	hg19	19	49920441	49920441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CCDC155	NM_144688	exon19	c.G1465A	p.A489T	CAGCAAGCCCTGG	.	42.0	19.0	60.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
AP2A1	160	hgsc.bcm.edu	hg19	19	50285918	50285918	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	AP2A1	NM_130787	exon4	c.A410G	p.N137S	TCGCCAACGTGGG	.	30.0	12.0	51.0	0.0	.	108	.	.	.	none	.	.	PASS	Atlas-SNP
JAG1	182	hgsc.bcm.edu	hg19	20	10639160	10639160	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	JAG1	NM_000214	exon4	c.A650C	p.N217T	GTTTTGTTGCCAT	.	58.0	25.0	89.0	0.0	.	213	.	.	.	none	.	.	PASS	Atlas-SNP
MYT1	4661	hgsc.bcm.edu	hg19	20	62851117	62851117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	MYT1	NM_004535	exon13	c.A2023G	p.K675E	ATGCACAAACACC	.	174.0	67.0	191.0	0.0	.	152	.	.	.	none	.	.	PASS	Atlas-SNP
DYRK1A	1859	hgsc.bcm.edu	hg19	21	38884349	38884349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	DYRK1A	NM_001396	exon11	c.G1807A	p.G603S	CACCATGGTAACA	.	129.0	45.0	154.0	0.0	.	85	.	.	.	none	.	.	PASS	Atlas-SNP
NF2	4771	hgsc.bcm.edu	hg19	22	30038228	30038228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.,1	NF2	NM_000268	exon4	c.C401A	p.P134H	ACTGCCCTCCTGA	.	50.0	20.0	76.0	0.0	.	1312	.	.	.	none	.	.	PASS	Atlas-SNP
NF2	4771	hgsc.bcm.edu	hg19	22	30038229	30038229	+	Silent	SNP	T	T	C	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	NF2	NM_000268	exon4	c.T402C	p.P134P	CTGCCCTCCTGAG	.	49.0	20.0	76.0	0.0	.	1312	.	.	.	none	.	.	PASS	Atlas-SNP
SLC35A2	7355	hgsc.bcm.edu	hg19	X	48762075	48762075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SLC35A2	NM_001042498	exon4	c.C1111T	p.P371S	GCTGCGGTGGTGG	.	23.0	13.0	44.0	0.0	.	46	.	.	.	none	.	.	PASS	Atlas-SNP
LPAR4	2846	hgsc.bcm.edu	hg19	X	78011381	78011381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	LPAR4	NM_005296	exon2	c.C1015T	p.P339S	GAAACACCTTTGA	.	66.0	47.0	64.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
ND6	0	hgsc.bcm.edu	hg19	MT	14612	14612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	.	ENST00000361681	exon1	c.C62T	p.S21F	GGCTTAGAAGAAA	.	23.0	19.0	16.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
SLC25A15	10166	hgsc.bcm.edu	hg19	13	41381598	41381598	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SLC25A15	NM_014252	exon5	c.620delT	p.L207X	.	.	63.0	29.0	69.0	0.0	.	30	.	0.460317	0	none	.	.	PASS	Atlas-Indel,Pindel
TEX9	374618	hgsc.bcm.edu	hg19	15	56686956	56686956	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	TEX9,NS,carcinoma,0,1	TEX9	NM_198524	exon9	c.751delG	p.E251fs	.	.	85.0	29.0	102.0	0.0	.	29	.	0.341176	0	none	.	.	PASS	Atlas-Indel,Pindel
ERRFI1	54206	hgsc.bcm.edu	hg19	1	8074134	8074135	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ERRFI1	NM_018948	exon4	c.525_526del	p.175_176del	.	.	99.0	41.0	79.0	0.0	.	42	.	0.414141	0	none	.	.	PASS	Atlas-Indel,Pindel
NAB2	4665	hgsc.bcm.edu	hg19	12	57486863	57486863	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	NAB2	NM_005967	exon5	c.1160delA	p.H387fs	.	.	54.0	19.0	61.0	0.0	.	47	.	0.351852	0	none	.	.	PASS	Atlas-Indel,Pindel
PCDHB10	56126	hgsc.bcm.edu	hg19	5	140572491	140572494	+	Frame_Shift_Del	DEL	AGTC	AGTC	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	AGTC	AGTC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	PCDHB10	NM_018930	exon1	c.365_368del	p.122_123del	.	.	182.0	54.0	175.0	0.0	.	177	.	0.296703	0	none	.	.	PASS	Atlas-Indel,Pindel
SMARCB1	6598	hgsc.bcm.edu	hg19	22	24175838	24175839	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	SMARCB1	NM_003073	exon8	c.1066_1067insTT	p.L356fs	.	.	90.0	24.0	83.0	0.0	.	586	.	0.266667	0	none	.	.	PASS	Atlas-Indel,Pindel
ADAM20	8748	hgsc.bcm.edu	hg19	14	70990728	70990729	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ADAM20	NM_003814	exon2	c.897_898del	p.299_300del	.	.	44.0	13.0	42.0	0.0	.	59	.	0.295455	0	none	.	.	PASS	Atlas-INDEL
CTCFL	140690	hgsc.bcm.edu	hg19	20	56098141	56098141	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CTCFL	NM_001269044	exon2	c.738delT	p.N246fs	.	.	72.0	24.0	85.0	0.0	.	97	.	0.333333	0	none	.	.	PASS	Atlas-Indel,Pindel
TSHZ1	10194	hgsc.bcm.edu	hg19	18	72999467	72999468	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TSHZ1	NM_005786	exon2	c.1970_1971insA	p.A657fs	.	.	103.0	31.0	136.0	0.0	.	104	.	0.300971	0	none	.	.	PASS	Atlas-INDEL
ODF2	4957	hgsc.bcm.edu	hg19	9	131250301	131250301	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ODF2	NM_153435	exon14	c.1724delT	p.L575fs	.	.	46.0	16.0	64.0	0.0	.	227	.	0.347826	0	none	.	.	PASS	Atlas-Indel,Pindel
TET1	80312	hgsc.bcm.edu	hg19	10	70446307	70446307	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TET1	NM_030625	exon11	c.5246delA	p.Q1749fs	.	.	136.0	44.0	130.0	0.0	.	255	.	0.323529	0	none	.	.	PASS	Atlas-Indel,Pindel
EHMT2	10919	hgsc.bcm.edu	hg19	6	31852462	31852462	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	EHMT2	NM_006709	exon20	c.2564delT	p.L855fs	.	.	66.0	27.0	96.0	0.0	.	45	.	0.409091	0	none	.	.	PASS	Atlas-Indel,Pindel
PARG	8505	hgsc.bcm.edu	hg19	10	51028288	51028288	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	PARG	NM_003631	exon17	c.2700delC	p.F900fs	.	.	75.0	21.0	89.0	0.0	.	46	.	0.28	0	none	.	.	PASS	Atlas-Indel,Pindel
CLK4	57396	hgsc.bcm.edu	hg19	5	178030682	178030683	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	CLK4	NM_020666	exon13	c.1382_1383insA	p.T461fs	.	.	61.0	30.0	79.0	0.0	.	103	.	0.491803	0	none	.	.	PASS	Atlas-Indel,Pindel
FAM117B	150864	hgsc.bcm.edu	hg19	2	203560690	203560690	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	FAM117B	NM_173511	exon2	c.687delT	p.L229fs	.	.	92.0	32.0	87.0	0.0	.	73	.	0.347826	0	none	.	.	PASS	Atlas-Indel,Pindel
TSHZ1	10194	hgsc.bcm.edu	hg19	18	72999471	72999472	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	TSHZ1	NM_005786	exon2	c.1974_1975insA	p.K658fs	.	.	103.0	25.0	137.0	0.0	.	104	.	0.243	.	none	.	.	PASS	Pindel
ZEB1	6935	hgsc.bcm.edu	hg19	10	31810867	31810867	+	Splice_Site	DEL	A	A	-	novel		TCGA-B1-A47M-01A-11D-A25F-10	TCGA-B1-A47M-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	8fb7fcac-6c1d-40c2-9309-b53821cbef30	68d9e30c-356a-4fd1-a9e9-6e535a0a963d	.	ZEB1	NM_030751	exon7	c.2601+2A>-	.	.	.	81.0	19.0	91.0	0.0	.	173	.	0.235	.	none	.	.	PASS	Pindel