Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm EPHA8 2046 hgsc.bcm.edu hg19 1 22902757 22902757 + Silent SNP G G A novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . EPHA8 NM_020526 exon3 c.G207A p.T69T CCACACGTACCAG . 234.0 51.0 301.0 0.0 . 221 . . . none . . PASS Atlas-SNP ERI3 79033 hgsc.bcm.edu hg19 1 44778900 44778900 + Missense_Mutation SNP G G A novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . ERI3 NM_024066 exon5 c.C607T p.L203F CGGTGAGCTGAAA . 113.0 27.0 139.0 0.0 . 39 . . . none . . PASS Atlas-SNP KCNN3 3782 hgsc.bcm.edu hg19 1 154680665 154680665 + Silent SNP C C T novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 KCNN3,NS,carcinoma,0,1 KCNN3 NM_001204087 exon9 c.G2028A p.S676S CAGCTTCGACTCC . 111.0 31.0 146.0 0.0 . 141 . . . none . . PASS Atlas-SNP SCN2A 6326 hgsc.bcm.edu hg19 2 166246020 166246020 + Missense_Mutation SNP C C T rs367833365 TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . SCN2A NM_001040143 exon26 c.C5704T p.R1902C TTGAAACGCAAAC . 205.0 39.0 212.0 0.0 . 589 . . . weak . . PASS Atlas-SNP LRP2 4036 hgsc.bcm.edu hg19 2 170003429 170003429 + Missense_Mutation SNP C C T novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . LRP2 NM_004525 exon69 c.G12631A p.E4211K CAGACTCGATTTT . 195.0 42.0 200.0 0.0 . 751 . . . none . . PASS Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179473456 179473456 + Missense_Mutation SNP A A T novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . TTN NM_001267550 exon274 c.T52282A p.C17428S ATTTGCAATGTCT . 103.0 24.0 120.0 0.0 . 18412 . . . none . . PASS Atlas-SNP NSUN3 63899 hgsc.bcm.edu hg19 3 93845254 93845254 + Missense_Mutation SNP G G T novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . NSUN3 NM_022072 exon6 c.G943T p.V315L CTCTTAGTGATTC . 173.0 19.0 185.0 0.0 . 33 . . . none . . PASS Atlas-SNP DNAH8 1769 hgsc.bcm.edu hg19 6 38781879 38781879 + Missense_Mutation SNP G G A novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . DNAH8 NM_001206927 exon25 c.G3307A p.E1103K AAAAGTGAAGTAC . 118.0 5.0 130.0 0.0 . 1239 . . . none . . PASS Atlas-SNP IQCE 23288 hgsc.bcm.edu hg19 7 2645529 2645529 + Missense_Mutation SNP T T C novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . IQCE NM_152558 exon20 c.T1763C p.V588A CCCGCGTTCCGAG . 53.0 8.0 160.0 0.0 . 66 . . . none . . PASS Atlas-SNP PCLO 27445 hgsc.bcm.edu hg19 7 82544315 82544315 + Silent SNP A A G novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . PCLO NM_014510 exon7 c.T12987C p.S4329S TGCATGACTAAAG . 199.0 56.0 176.0 0.0 . 1506 . . . none . . PASS Atlas-SNP NDUFB6 4712 hgsc.bcm.edu hg19 9 32571048 32571048 + Silent SNP G G T novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . NDUFB6 NM_182739 exon2 c.C183A p.V61V CCCATGGACCTGG . 130.0 28.0 147.0 0.0 . 12 . . . none . . PASS Atlas-SNP SECISBP2 79048 hgsc.bcm.edu hg19 9 91964729 91964729 + Missense_Mutation SNP G G A novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . SECISBP2 NM_024077 exon13 c.G1777A p.V593I CCTTCGGTTGAGG . 179.0 31.0 192.0 0.0 . 64 . . . none . . PASS Atlas-SNP ERC1 23085 hgsc.bcm.edu hg19 12 1372211 1372211 + Silent SNP T T A novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . ERC1 NM_178040 exon14 c.T2499A p.R833R TCTCCGTAAGAAG . 52.0 9.0 80.0 0.0 . 95 . . . none . . PASS Atlas-SNP GALNT6 11226 hgsc.bcm.edu hg19 12 51757995 51757995 + Missense_Mutation SNP C C G rs138580901 bycluster;byfrequency;alternate_allele TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . GALNT6 NM_007210 exon6 c.G959C p.R320P TTGCCTCGGCTAT . 237.0 52.0 307.0 0.0 . 63 . . . alt C|1.000;T|0.000 . PASS Atlas-SNP HECTD4 283450 hgsc.bcm.edu hg19 12 112605266 112605266 + Missense_Mutation SNP C C T novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . . NM_001109662 exon72 c.G11987A p.G3996E GCAATCCCCAGCA . 89.0 23.0 93.0 0.0 . . . . . none . . PASS Atlas-SNP TMEM132C 92293 hgsc.bcm.edu hg19 12 129180556 129180556 + Missense_Mutation SNP G G A novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . TMEM132C NM_001136103 exon7 c.G1837A p.A613T CTGGTGGCAGACT . 128.0 30.0 128.0 0.0 . 142 . . . none . . PASS Atlas-SNP MTUS2 23281 hgsc.bcm.edu hg19 13 29675028 29675028 + Silent SNP C C T novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . MTUS2 NM_001033602 exon3 c.C2595T p.V865V CTTTGTCCGGAGC . 71.0 18.0 62.0 0.0 . 279 . . . none . . PASS Atlas-SNP TRIP4 9325 hgsc.bcm.edu hg19 15 64702014 64702014 + Missense_Mutation SNP G G C novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . TRIP4 NM_016213 exon7 c.G1030C p.E344Q CTAGCAGAGTATC . 45.0 15.0 44.0 0.0 . 43 . . . none . . PASS Atlas-SNP DNAH2 146754 hgsc.bcm.edu hg19 17 7734797 7734797 + Silent SNP C C G novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . DNAH2 NM_020877 exon80 c.C12549G p.S4183S CCCCTCCCCCCTC . 133.0 33.0 138.0 0.0 . 498 . . . none . . PASS Atlas-SNP PIPOX 51268 hgsc.bcm.edu hg19 17 27379969 27379969 + Missense_Mutation SNP G G C rs58011977 bycluster;byfrequency;by1000genomes;alternate_allele TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . PIPOX NM_016518 exon3 c.G295C p.E99Q ATGAAAGAGAATC . 165.0 22.0 148.0 0.0 . 42 . . . alt G|0.999;A|0.001 . PASS Atlas-SNP CETN1 1068 hgsc.bcm.edu hg19 18 580595 580595 + Missense_Mutation SNP G G A novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 CETN1,NS,carcinoma,0,1 CETN1 NM_004066 exon1 c.G187A p.E63K GGCTTCGAACCCA . 83.0 25.0 89.0 0.0 . 48 . . . none . . PASS Atlas-SNP LPIN2 9663 hgsc.bcm.edu hg19 18 2937962 2937962 + Missense_Mutation SNP C C A novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . LPIN2 NM_014646 exon7 c.G896T p.R299L ATTACCCGAAAAT . 100.0 4.0 93.0 0.0 . 75 . . . none . . PASS Atlas-SNP PAF1 54623 hgsc.bcm.edu hg19 19 39879309 39879309 + Missense_Mutation SNP T T C novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . PAF1 NM_019088 exon10 c.A748G p.M250V CATCCATCATGCC . 254.0 46.0 307.0 0.0 . 43 . . . none . . PASS Atlas-SNP SPTBN4 57731 hgsc.bcm.edu hg19 19 41063170 41063170 + Missense_Mutation SNP G G A novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . SPTBN4 NM_020971 exon26 c.G5531A p.R1844Q ACGCCCGAGAGCT . 38.0 8.0 84.0 0.0 . 213 . . . none . . PASS Atlas-SNP HRC 3270 hgsc.bcm.edu hg19 19 49657889 49657889 + Silent SNP T T C novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 .,1 HRC NM_002152 exon1 c.A606G p.E202E CTCCTCTTCCTCC . 227.0 19.0 231.0 2.0 . 85 . . . none . . PASS Atlas-SNP NLRP11 204801 hgsc.bcm.edu hg19 19 56320200 56320200 + Missense_Mutation SNP C C G rs16986626 bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . NLRP11 NM_145007 exon5 c.G1776C p.R592S AAGTGTCCTCAGG . 138.0 31.0 128.0 0.0 . 139 . . . alt C|0.890;N|0.000 . PASS Atlas-SNP ASIP 434 hgsc.bcm.edu hg19 20 32856797 32856797 + Missense_Mutation SNP A A G novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . ASIP NM_001672 exon3 c.A223G p.K75E ACGCAGAAGGAGG . 39.0 8.0 81.0 0.0 . 6 . . . none . . PASS Atlas-SNP KRTAP10-5 386680 hgsc.bcm.edu hg19 21 45999772 45999772 + Missense_Mutation SNP T T C novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 KRTAP10-5,NS,carcinoma,0,2 KRTAP10-5 NM_198694 exon1 c.A684G p.I228M CCTGCATATGGGG . 62.0 3.0 73.0 1.0 . 43 . . . none . . PASS Atlas-SNP SPECC1L 23384 hgsc.bcm.edu hg19 22 24720193 24720193 + Missense_Mutation SNP G G T novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . SPECC1L NM_001145468 exon5 c.G1944T p.E648D GGTAGAGGATGAA . 86.0 4.0 80.0 0.0 . 85 . . . none . . PASS Atlas-SNP SULT1C4 27233 hgsc.bcm.edu hg19 2 109003803 109003804 + Frame_Shift_Ins INS - - CA novel TCGA-B1-A47O-01A-11D-A25F-10 TCGA-B1-A47O-10A-01D-A25F-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq ca2b9fe2-97e0-4d4f-afd7-a5acf638800f c023a62c-e498-4e1e-be91-99cf6d7b0708 . SULT1C4 NM_006588 exon7 c.824_825insCA p.F275fs . . 124.0 25.0 116.0 0.0 . 41 . 0.201613 0 none . . PASS Atlas-Indel,Pindel