Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm DENND4B 9909 hgsc.bcm.edu hg19 1 153916546 153916546 + Missense_Mutation SNP A A G novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . DENND4B NM_014856 exon2 c.T305C p.L102P TCAACGAGGGGGG . 72.0 17.0 109.0 0.0 . 210 . . . none . . PASS Atlas-SNP THBS3 7059 hgsc.bcm.edu hg19 1 155175049 155175049 + Silent SNP C C T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . THBS3 NM_007112 exon3 c.G345A p.A115A CAGGCCCGCTTGC . 55.0 13.0 66.0 0.0 . 70 . . . none . . PASS Atlas-SNP SHCBP1L 81626 hgsc.bcm.edu hg19 1 182922005 182922005 + Silent SNP C C G novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . SHCBP1L NM_030933 exon1 c.G264C p.A88A CTCCGCCGCCGCC . 43.0 18.0 35.0 0.0 . 64 . . . none . . PASS Atlas-SNP F13B 2165 hgsc.bcm.edu hg19 1 197020002 197020002 + Silent SNP T T C novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 .,1 F13B NM_001994 exon10 c.A1563G p.K521K CATTCCTTTAGAT . 68.0 27.0 102.0 0.0 . 137 . . . none . . PASS Atlas-SNP PPP1R15B 84919 hgsc.bcm.edu hg19 1 204379052 204379052 + Silent SNP A A G novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . PPP1R15B NM_032833 exon1 c.T1488C p.I496I AGTCTGAATTGTT . 72.0 23.0 81.0 0.0 . 67 . . . none . . PASS Atlas-SNP PARP1 142 hgsc.bcm.edu hg19 1 226570817 226570817 + Missense_Mutation SNP T T A novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . PARP1 NM_001618 exon8 c.A1079T p.E360V CTGGTTTCTGGGG . 96.0 40.0 142.0 0.0 . 100 . . . none . . PASS Atlas-SNP ARID4B 51742 hgsc.bcm.edu hg19 1 235345203 235345203 + Missense_Mutation SNP A A T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . ARID4B NM_016374 exon20 c.T3031A p.F1011I TTGGAAATTCTGC . 77.0 24.0 104.0 0.0 . 142 . . . none . . PASS Atlas-SNP FMN2 56776 hgsc.bcm.edu hg19 1 240371139 240371139 + Silent SNP C C T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . FMN2 NM_020066 exon5 c.C3027T p.P1009P CATACCCCCTCCT . 81.0 5.0 87.0 0.0 . 451 . . . none . . PASS Atlas-SNP ARID5A 10865 hgsc.bcm.edu hg19 2 97215160 97215160 + Missense_Mutation SNP C C A novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . ARID5A NM_212481 exon3 c.C223A p.P75T CACACGCCCATCG . 127.0 72.0 111.0 0.0 . 31 . . . none . . PASS Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179431535 179431535 + Missense_Mutation SNP T T C novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . TTN NM_001267550 exon326 c.A79324G p.T26442A AATCTGTAATGCG . 60.0 42.0 58.0 0.0 . 18412 . . . none . . PASS Atlas-SNP PPARG 5468 hgsc.bcm.edu hg19 3 12447397 12447397 + Silent SNP G G C novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . PPARG NM_015869 exon5 c.G636C p.R212R TGGGCGGATGCCA . 83.0 5.0 62.0 0.0 . 49 . . . none . . PASS Atlas-SNP DAG1 1605 hgsc.bcm.edu hg19 3 49547996 49547996 + Missense_Mutation SNP T T C novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . DAG1 NM_001177642 exon3 c.T29C p.L10P CGCTGCTGCTGCC . 60.0 13.0 48.0 0.0 . 60 . . . none . . PASS Atlas-SNP MBNL1 4154 hgsc.bcm.edu hg19 3 152163262 152163262 + Silent SNP C C T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . MBNL1 NM_207292 exon5 c.C741T p.I247I CAAGATCAAGGCT . 145.0 37.0 118.0 0.0 . 100 . . . none . . PASS Atlas-SNP USP13 8975 hgsc.bcm.edu hg19 3 179462840 179462840 + Missense_Mutation SNP T T A novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . USP13 NM_003940 exon13 c.T1544A p.I515N AACTGATCGCTTA . 158.0 65.0 117.0 0.0 . 117 . . . none . . PASS Atlas-SNP DLG1 1739 hgsc.bcm.edu hg19 3 196888577 196888577 + Silent SNP A A T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . DLG1 NM_001098424 exon6 c.T516A p.T172T AGGGACAGTGGGA . 398.0 99.0 381.0 0.0 . 120 . . . none . . PASS Atlas-SNP CLNK 116449 hgsc.bcm.edu hg19 4 10522421 10522421 + Missense_Mutation SNP T T G novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . CLNK NM_052964 exon15 c.A766C p.N256H CTCTGTTTTGCAC . 104.0 35.0 137.0 0.0 . 85 . . . none . . PASS Atlas-SNP USP46 64854 hgsc.bcm.edu hg19 4 53492228 53492228 + Missense_Mutation SNP T T C novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . USP46 NM_022832 exon4 c.A518G p.Q173R GTTCCCTGAAAAA . 202.0 64.0 224.0 0.0 . 38 . . . none . . PASS Atlas-SNP EXOC1 55763 hgsc.bcm.edu hg19 4 56759888 56759888 + Missense_Mutation SNP T T C novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . EXOC1 NM_018261 exon15 c.T1895C p.L632P CTTTCCTAAGTAC . 121.0 40.0 141.0 0.0 . 103 . . . none . . PASS Atlas-SNP CDKL2 8999 hgsc.bcm.edu hg19 4 76521462 76521462 + Nonsense_Mutation SNP G G T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . CDKL2 NM_003948 exon10 c.C1385A p.S462X ATGCCTGATGGGG . 101.0 5.0 132.0 0.0 . 58 . . . none . . PASS Atlas-SNP ZNF474 133923 hgsc.bcm.edu hg19 5 121487756 121487756 + Missense_Mutation SNP C C A novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . ZNF474 NM_207317 exon2 c.C71A p.T24N AACCCACTTTCCT . 98.0 25.0 140.0 0.0 . 43 . . . none . . PASS Atlas-SNP NKX2-5 1482 hgsc.bcm.edu hg19 5 172660100 172660100 + Missense_Mutation SNP C C A novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . NKX2-5 NM_004387 exon2 c.G447T p.Q149H ATAGACCTGCGCC . 74.0 22.0 60.0 0.0 . 42 . . . none . . PASS Atlas-SNP FGFR4 2264 hgsc.bcm.edu hg19 5 176520385 176520385 + Silent SNP A A G novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . FGFR4 NM_022963 exon8 c.A1110G p.R370R AGGCAGAACCAAG . 87.0 37.0 97.0 0.0 . 174 . . . none . . PASS Atlas-SNP DNAH8 1769 hgsc.bcm.edu hg19 6 38863980 38863980 + Missense_Mutation SNP A A C novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . DNAH8 NM_001206927 exon60 c.A8919C p.E2973D GTTTGAAGTACCC . 100.0 23.0 143.0 0.0 . 1239 . . . none . . PASS Atlas-SNP GCLC 2729 hgsc.bcm.edu hg19 6 53380907 53380907 + Missense_Mutation SNP C C T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . GCLC NM_001498 exon4 c.G560A p.S187N ACTCACCTGAAGC . 65.0 15.0 88.0 0.0 . 58 . . . none . . PASS Atlas-SNP GCLC 2729 hgsc.bcm.edu hg19 6 53380911 53380911 + Missense_Mutation SNP A A G novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . GCLC NM_001498 exon4 c.T556C p.F186L ACCTGAAGCGAGG . 67.0 16.0 89.0 0.0 . 58 . . . none . . PASS Atlas-SNP FAM135A 57579 hgsc.bcm.edu hg19 6 71236101 71236101 + Missense_Mutation SNP A A G novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . FAM135A NM_001162529 exon13 c.A3314G p.Y1105C CAGATTATTCAGC . 159.0 48.0 186.0 0.0 . 181 . . . none . . PASS Atlas-SNP FAM20C 56975 hgsc.bcm.edu hg19 7 193541 193541 + Silent SNP C C T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . FAM20C NM_020223 exon1 c.C342T p.A114A CGCGGCCGAGCCG . 40.0 23.0 21.0 0.0 . 18 . . . none . . PASS Atlas-SNP FAM20C 56975 hgsc.bcm.edu hg19 7 193561 193561 + Nonsense_Mutation SNP T T A novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . FAM20C NM_020223 exon1 c.T362A p.L121X GCGCCTTGCGGGG . 26.0 14.0 13.0 0.0 . 18 . . . none . . PASS Atlas-SNP ZNF853 54753 hgsc.bcm.edu hg19 7 6661545 6661545 + Missense_Mutation SNP A A T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . ZNF853 NM_017560 exon3 c.A923T p.Q308L AACTGCAGCCTCC . 93.0 23.0 65.0 0.0 . 32 . . . none . . PASS Atlas-SNP THSD7A 221981 hgsc.bcm.edu hg19 7 11582721 11582721 + Missense_Mutation SNP A A C novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . THSD7A NM_015204 exon5 c.T1477G p.L493V TGCATAATTTTAA . 166.0 75.0 170.0 0.0 . 219 . . . none . . PASS Atlas-SNP TMED4 222068 hgsc.bcm.edu hg19 7 44621390 44621390 + Missense_Mutation SNP T T G novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . TMED4 NM_182547 exon2 c.A193C p.K65Q CCTCCTTCTGCTT . 115.0 49.0 108.0 0.0 . 13 . . . none . . PASS Atlas-SNP XRCC2 7516 hgsc.bcm.edu hg19 7 152345944 152345944 + Missense_Mutation SNP G G T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . XRCC2 NM_005431 exon3 c.C626A p.P209H TGAGAAGGTTCTT . 90.0 17.0 78.0 0.0 . 30 . . . none . . PASS Atlas-SNP WDR67 93594 hgsc.bcm.edu hg19 8 124154514 124154514 + Missense_Mutation SNP A A T rs144810574 bycluster;byfrequency;alternate_allele TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . WDR67 NM_145647 exon19 c.A2653T p.N885Y AAAGAAAATTTGG . 349.0 107.0 405.0 1.0 . 97 . . . alt A|0.999;C|0.001 . PASS Atlas-SNP COL22A1 169044 hgsc.bcm.edu hg19 8 139707081 139707081 + Silent SNP C C A novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . COL22A1 NM_152888 exon33 c.G2634T p.L878L CCCAGGCAGGCCT . 54.0 16.0 69.0 0.0 . 390 . . . none . . PASS Atlas-SNP SCRIB 23513 hgsc.bcm.edu hg19 8 144892982 144892982 + Missense_Mutation SNP A A T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . SCRIB NM_015356 exon12 c.T1278A p.D426E CCCAGCATCCTCT . 21.0 6.0 28.0 0.0 . 192 . . . none . . PASS Atlas-SNP RABL6 55684 hgsc.bcm.edu hg19 9 139734263 139734263 + Missense_Mutation SNP G G A novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . . NM_001173988 exon13 c.G1879A p.D627N GACTCGGACCTCT . 49.0 18.0 33.0 0.0 . . . . . none . . PASS Atlas-SNP SYCE1 93426 hgsc.bcm.edu hg19 10 135372389 135372389 + Missense_Mutation SNP A A T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . SYCE1 NM_001143763 exon4 c.T263A p.L88Q GAGTCCAGTTCCT . 72.0 21.0 59.0 0.0 . 81 . . . none . . PASS Atlas-SNP SYCE1 93426 hgsc.bcm.edu hg19 10 135372390 135372390 + Missense_Mutation SNP G G T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . SYCE1 NM_001143763 exon4 c.C262A p.L88M AGTCCAGTTCCTT . 72.0 22.0 60.0 0.0 . 81 . . . none . . PASS Atlas-SNP DAK 26007 hgsc.bcm.edu hg19 11 61111339 61111339 + Missense_Mutation SNP A A G novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . DAK NM_015533 exon12 c.A994G p.T332A GAAACCACTGCAG . 53.0 16.0 44.0 0.0 . 52 . . . none . . PASS Atlas-SNP CCDC87 55231 hgsc.bcm.edu hg19 11 66359427 66359427 + Missense_Mutation SNP C C T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . CCDC87 NM_018219 exon1 c.G1060A p.A354T CCTCAGCCACGAT . 69.0 29.0 54.0 0.0 . 83 . . . none . . PASS Atlas-SNP ANKRD13D 338692 hgsc.bcm.edu hg19 11 67058950 67058950 + Missense_Mutation SNP C C A rs373999660 alternate_allele TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . ANKRD13D NM_207354 exon4 c.C355A p.P119T TAGGCCCCCGATT . 36.0 10.0 54.0 0.0 . 71 . . . alt . . PASS Atlas-SNP PITPNM1 9600 hgsc.bcm.edu hg19 11 67267651 67267651 + Silent SNP G G A novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . PITPNM1 NM_001130848 exon6 c.C882T p.P294P GCCTGGGGGGGCC . 23.0 11.0 13.0 0.0 . 84 . . . none . . PASS Atlas-SNP CERS5 91012 hgsc.bcm.edu hg19 12 50529605 50529605 + Missense_Mutation SNP T T C novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . . NM_147190 exon8 c.A782G p.N261S GCATAATTGGCCA . 87.0 20.0 107.0 0.0 . . . . . none . . PASS Atlas-SNP GSX1 219409 hgsc.bcm.edu hg19 13 28367053 28367053 + Silent SNP C C T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . GSX1 NM_145657 exon1 c.C226T p.L76L CCCGCGCTGCCTC . 16.0 4.0 11.0 0.0 . 20 . . . none . . PASS Atlas-SNP NBEA 26960 hgsc.bcm.edu hg19 13 35758158 35758158 + Missense_Mutation SNP T T G novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . NBEA NM_015678 exon30 c.T4877G p.F1626C ATGGATTCCTTGC . 102.0 32.0 89.0 0.0 . 340 . . . none . . PASS Atlas-SNP FARP1 10160 hgsc.bcm.edu hg19 13 98865472 98865472 + Splice_Site SNP A A G novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . FARP1 . . . . TCCTGCAGATATT . 68.0 20.0 60.0 0.0 . 207 . . . none . . PASS Atlas-SNP IRS2 8660 hgsc.bcm.edu hg19 13 110436093 110436093 + Missense_Mutation SNP A A G novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 IRS2,colon,carcinoma,0,1 IRS2 NM_003749 exon1 c.T2308C p.S770P TGGGGGACACGTT . 49.0 2.0 33.0 0.0 . 44 . . . none . . PASS Atlas-SNP GPR137C 283554 hgsc.bcm.edu hg19 14 53099007 53099007 + Missense_Mutation SNP T T A novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . GPR137C NM_001099652 exon4 c.T847A p.W283R TATGGCTGGGATA . 126.0 24.0 166.0 0.0 . 24 . . . none . . PASS Atlas-SNP SRP14 6727 hgsc.bcm.edu hg19 15 40331316 40331316 + Missense_Mutation SNP A A G novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . SRP14 NM_003134 exon1 c.T2C p.M1T AACACCATCGCGG . 71.0 8.0 68.0 0.0 . 11 . . . none . . PASS Atlas-SNP ZFYVE19 84936 hgsc.bcm.edu hg19 15 41099608 41099608 + Missense_Mutation SNP A A G novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . ZFYVE19 NM_032850 exon1 c.A122G p.Y41C GCGCGTACAGGTC . 155.0 43.0 127.0 0.0 . 31 . . . none . . PASS Atlas-SNP MFAP1 4236 hgsc.bcm.edu hg19 15 44105507 44105507 + Silent SNP C C T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . MFAP1 NM_005926 exon5 c.G666A p.Q222Q CTCCTTCTGTTTC . 74.0 23.0 74.0 0.0 . 36 . . . none . . PASS Atlas-SNP PIF1 80119 hgsc.bcm.edu hg19 15 65114469 65114469 + Missense_Mutation SNP A A T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . PIF1 NM_025049 exon4 c.T813A p.F271L ACCTGCAAAGGCA . 45.0 10.0 48.0 0.0 . 43 . . . none . . PASS Atlas-SNP NEO1 4756 hgsc.bcm.edu hg19 15 73581573 73581573 + Missense_Mutation SNP C C A novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . NEO1 NM_001172623 exon25 c.C3736A p.P1246T CAGCCACCCCAGC . 73.0 32.0 70.0 0.0 . 102 . . . none . . PASS Atlas-SNP PML 5371 hgsc.bcm.edu hg19 15 74325643 74325643 + Silent SNP G G A novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . PML NM_033244 exon6 c.G1545A p.K515K CTCCAAGGCAGTC . 85.0 21.0 92.0 0.0 . 169 . . . none . . PASS Atlas-SNP SLC28A1 9154 hgsc.bcm.edu hg19 15 85476453 85476453 + Silent SNP G G A novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . SLC28A1 NM_004213 exon13 c.G1161A p.P387P CTACCCGGAGGTG . 56.0 17.0 76.0 0.0 . 118 . . . none . . PASS Atlas-SNP ZNF597 146434 hgsc.bcm.edu hg19 16 3487293 3487293 + Missense_Mutation SNP A A T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . ZNF597 NM_152457 exon4 c.T406A p.L136I TTCCTAAATATTC . 208.0 123.0 201.0 0.0 . 41 . . . none . . PASS Atlas-SNP ZNF646 9726 hgsc.bcm.edu hg19 16 31092685 31092685 + Silent SNP C C T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . ZNF646 NM_014699 exon2 c.C5040T p.T1680T CTGCACCCAGTGC . 112.0 19.0 92.0 0.0 . 133 . . . none . . PASS Atlas-SNP ITGAM 3684 hgsc.bcm.edu hg19 16 31335987 31335987 + Missense_Mutation SNP C C A novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . ITGAM NM_001145808 exon18 c.C2176A p.P726T GAGGACCCAGTGA . 140.0 17.0 109.0 0.0 . 137 . . . none . . PASS Atlas-SNP CLEC18A 348174 hgsc.bcm.edu hg19 16 69988283 69988283 + Missense_Mutation SNP T T C novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . CLEC18A NM_001271197 exon4 c.T263C p.L88P CAGCCCTCTGTGG . 396.0 181.0 309.0 1.0 . 9 . . . none . . PASS Atlas-SNP ZFHX3 463 hgsc.bcm.edu hg19 16 72984405 72984405 + Missense_Mutation SNP A A C novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . ZFHX3 NM_006885 exon3 c.T3179G p.V1060G GAGTTGACCGTGT . 72.0 37.0 59.0 0.0 . 404 . . . none . . PASS Atlas-SNP JPH3 57338 hgsc.bcm.edu hg19 16 87678517 87678517 + Missense_Mutation SNP G G A novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . JPH3 NM_020655 exon2 c.G1036A p.G346S GTCGGCGGCAAGC . 71.0 29.0 47.0 0.0 . 95 . . . none . . PASS Atlas-SNP KLHL11 55175 hgsc.bcm.edu hg19 17 40010765 40010765 + Missense_Mutation SNP T T C novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . KLHL11 NM_018143 exon2 c.A1354G p.K452E TCCCTTTGACTTC . 214.0 96.0 206.0 0.0 . 44 . . . none . . PASS Atlas-SNP KIF18B 146909 hgsc.bcm.edu hg19 17 43009571 43009571 + Silent SNP C C T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . KIF18B NM_001264573 exon10 c.G1278A p.Q426Q GCAGGGCTGGCTG . 51.0 8.0 33.0 0.0 . 63 . . . none . . PASS Atlas-SNP TLK2 11011 hgsc.bcm.edu hg19 17 60663585 60663585 + Missense_Mutation SNP C C A novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . TLK2 NM_006852 exon16 c.C1458A p.H486Q TTACCACAAGTAA . 639.0 311.0 737.0 1.0 . 223 . . . none . . PASS Atlas-SNP CBX4 8535 hgsc.bcm.edu hg19 17 77807927 77807927 + Missense_Mutation SNP A A G rs200965379 TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 CBX4,uveal_tract,malignant_melanoma,0,1 CBX4 NM_003655 exon5 c.T1514C p.V505A GCCGCCACCGCCA . 45.0 6.0 25.0 1.0 . 40 . . . weak . . PASS Atlas-SNP LPIN2 9663 hgsc.bcm.edu hg19 18 2939488 2939488 + Missense_Mutation SNP T T C novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . LPIN2 NM_014646 exon6 c.A812G p.E271G GTGGACTCTGGGA . 42.0 16.0 42.0 0.0 . 75 . . . none . . PASS Atlas-SNP CCDC178 374864 hgsc.bcm.edu hg19 18 30992013 30992013 + Missense_Mutation SNP C C T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . . NM_001105528 exon2 c.G40A p.D14N GATCATCTCTAGT . 432.0 150.0 552.0 1.0 . . . . . none . . PASS Atlas-SNP FBN3 84467 hgsc.bcm.edu hg19 19 8183905 8183905 + Silent SNP G G A novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . FBN3 NM_032447 exon25 c.C3213T p.D1071D GTCCACGTCTGAA . 28.0 12.0 32.0 0.0 . 300 . . . none . . PASS Atlas-SNP PRDX2 7001 hgsc.bcm.edu hg19 19 12911694 12911694 + Missense_Mutation SNP T T C novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . PRDX2 NM_181738 exon3 c.A293G p.K98R GTGAGCTTAGCTG . 76.0 22.0 99.0 0.0 . 20 . . . none . . PASS Atlas-SNP FBXO46 23403 hgsc.bcm.edu hg19 19 46215777 46215777 + Missense_Mutation SNP A A G novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . FBXO46 NM_001080469 exon2 c.T977C p.L326P GCCAGCAGGAACT . 96.0 27.0 74.0 0.0 . 34 . . . none . . PASS Atlas-SNP DEFB118 117285 hgsc.bcm.edu hg19 20 29960794 29960794 + Missense_Mutation SNP G G T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . DEFB118 NM_054112 exon2 c.G193T p.V65F AGGCGAGTTCCTG . 109.0 30.0 144.0 0.0 . 30 . . . none . . PASS Atlas-SNP TPX2 22974 hgsc.bcm.edu hg19 20 30388879 30388879 + Missense_Mutation SNP G G T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . TPX2 NM_012112 exon18 c.G2240T p.C747F TCCACTGCTAAAC . 67.0 23.0 103.0 0.0 . 61 . . . none . . PASS Atlas-SNP SUSD2 56241 hgsc.bcm.edu hg19 22 24579518 24579518 + Missense_Mutation SNP T T A novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . SUSD2 NM_019601 exon3 c.T343A p.C115S GTGCACTGTGTGT . 46.0 19.0 54.0 0.0 . 68 . . . none . . PASS Atlas-SNP SNX12 29934 hgsc.bcm.edu hg19 X 70280928 70280928 + Missense_Mutation SNP G G T novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . SNX12 NM_001256185 exon5 c.C427A p.H143N ACATGTGTAGGCA . 47.0 32.0 47.0 0.0 . 18 . . . none . . PASS Atlas-SNP NEFH 4744 hgsc.bcm.edu hg19 22 29885593 29885594 + In_Frame_Ins INS - - TGAGAAGGCCAAGTCCCC rs267607533 bycluster;alternate_allele TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . NEFH NM_021076 exon4 c.1964_1965insTGAGAAGGCCAAGTCCCC p.P655delinsPEKAKSP . . 307.0 58.0 263.0 0.0 . 178 . 0.188925 0 alt . . PASS Atlas-INDEL ANTXR2 118429 hgsc.bcm.edu hg19 4 80976344 80976344 + Frame_Shift_Del DEL C C - novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . ANTXR2 NM_001145794 exon6 c.516delT p.S172fs . . 127.0 42.0 147.0 0.0 . 97 . 0.330709 0 none . . PASS Atlas-Indel,Pindel DLEC1 9940 hgsc.bcm.edu hg19 3 38101279 38101280 + In_Frame_Ins INS - - CAT novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . DLEC1 NM_007335 exon3 c.609_610insCAT p.K203delinsKH . . 91.0 39.0 60.0 0.0 . 278 . 0.428571 0 none . . PASS Atlas-Indel,Pindel PTEN 5728 hgsc.bcm.edu hg19 10 89692845 89692845 + Frame_Shift_Del DEL A A - novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 PTEN,colon,carcinoma,0,6 PTEN NM_000314 exon5 c.328delC p.Q110fs . . 224.0 59.0 229.0 0.0 . 3652 . 0.263393 0 none . . PASS Atlas-Indel,Pindel SHB 6461 hgsc.bcm.edu hg19 9 37919918 37919918 + Frame_Shift_Del DEL C C - novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . SHB NM_003028 exon6 c.1431delT p.S477fs . . 140.0 35.0 150.0 0.0 . 31 . 0.25 0 none . . PASS Atlas-Indel,Pindel CHCHD3 54927 hgsc.bcm.edu hg19 7 132570441 132570442 + Frame_Shift_Ins INS - - G novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . CHCHD3 NM_017812 exon5 c.434_435insC p.L145fs . . 65.0 15.0 89.0 0.0 . 21 . 0.230769 0 none . . PASS Atlas-Indel,Pindel CCSAP 126731 hgsc.bcm.edu hg19 1 229461075 229461076 + Frame_Shift_Del DEL AG AG - novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 AG AG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . . NM_145257 exon4 c.720_721del p.240_241del . . 101.0 28.0 125.0 0.0 . . . 0.277228 0 none . . PASS Atlas-Indel,Pindel C1orf112 55732 hgsc.bcm.edu hg19 1 169798424 169798424 + Frame_Shift_Del DEL T T - novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 C1orf112,NS,carcinoma,0,3 C1orf112 NM_018186 exon13 c.1147delG p.V383fs . . 111.0 29.0 143.0 0.0 . 74 . 0.261261 0 none . . PASS Atlas-Indel,Pindel SIRT4 23409 hgsc.bcm.edu hg19 12 120750516 120750517 + Frame_Shift_Del DEL AA AA - novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 AA AA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . SIRT4 NM_012240 exon3 c.754_755del p.252_252del . . 104.0 29.0 146.0 0.0 . 29 . 0.278846 0 none . . PASS Atlas-INDEL AMY1C 278 hgsc.bcm.edu hg19 1 104238120 104238120 + Frame_Shift_Del DEL C C - novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . AMY1C NM_001008219 exon2 c.143delC p.A48fs . . 639.0 48.0 731.0 0.0 . 11 . 0.0751174 0 none . . PASS Atlas-INDEL AMY1C 278 hgsc.bcm.edu hg19 1 104293229 104293229 + Frame_Shift_Del DEL T T - novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . AMY1C NM_001008219 exon2 c.137delA p.Y46fs . . 629.0 57.0 784.0 0.0 . 11 . 0.09062 0 none . . PASS Atlas-INDEL AMY1C 278 hgsc.bcm.edu hg19 1 104199090 104199090 + Frame_Shift_Del DEL T T - novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . AMY1C NM_001008219 exon2 c.137delA p.Y46fs . . 648.0 55.0 774.0 0.0 . 11 . 0.0848765 0 none . . PASS Atlas-INDEL PNPLA8 50640 hgsc.bcm.edu hg19 7 108154603 108154603 + Frame_Shift_Del DEL T T - novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . PNPLA8 NM_001256008 exon3 c.1192delG p.G398fs . . 106.0 23.0 89.0 0.0 . 82 . 0.216981 0 none . . PASS Atlas-Indel,Pindel LIMD1 8994 hgsc.bcm.edu hg19 3 45714309 45714327 + Frame_Shift_Del DEL ACAAGTAAGAAGGGATGGG ACAAGTAAGAAGGGATGGG - novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 ACAAGTAAGAAGGGATGGG ACAAGTAAGAAGGGATGGG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . LIMD1 NM_014240 exon5 c.1768_1772del p.590_591del . . 59.0 10.0 54.0 0.0 . 34 . 0.169 . none . . PASS Pindel SIRT4 23409 hgsc.bcm.edu hg19 12 120750516 120750518 + In_Frame_Del DEL AAG AAG - novel TCGA-B1-A657-01A-11D-A31X-10 TCGA-B1-A657-10A-01D-A31X-10 AAG AAG . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq c22d5cb0-397b-480a-97ae-4bf07e07c1f0 86a94d68-d695-416e-a19a-d1f1d0952902 . SIRT4 NM_012240 exon3 c.754_756del p.252_252del . . 105.0 20.0 149.0 0.0 . 29 . 0.190 . none . . PASS Pindel