Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm AMY2B 280 hgsc.bcm.edu hg19 1 104122036 104122036 + Missense_Mutation SNP G G A rs143243690 TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . AMY2B NM_020978 exon12 c.G1450A p.V484I ATCTACGTTTCTG . 1115.0 198.0 735.0 1.0 . 80 . . . weak G|1.000;A|0.000 0.000 PASS Atlas-SNP LRIG2 9860 hgsc.bcm.edu hg19 1 113616063 113616063 + Missense_Mutation SNP A A T novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . LRIG2 NM_014813 exon1 c.A35T p.Q12L AGGAGCAGTTGCT . 352.0 123.0 320.0 0.0 . 67 . . . none . . PASS Atlas-SNP KIAA0907 22889 hgsc.bcm.edu hg19 1 155899153 155899153 + Missense_Mutation SNP C C G novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . KIAA0907 NM_014949 exon4 c.G398C p.S133T GCCCCACTAAGTC . 139.0 52.0 88.0 0.0 . 58 . . . none . . PASS Atlas-SNP USF1 7391 hgsc.bcm.edu hg19 1 161011569 161011569 + Missense_Mutation SNP T T C novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . USF1 NM_001276373 exon6 c.A344G p.H115R GTATAGTGCGTCT . 141.0 13.0 123.0 0.0 . 29 . . . none . . PASS Atlas-SNP IMMT 10989 hgsc.bcm.edu hg19 2 86371415 86371415 + Silent SNP T T G novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . IMMT NM_006839 exon15 c.A2253C p.G751G AGTGGTTCCTATT . 101.0 40.0 94.0 0.0 . 65 . . . none . . PASS Atlas-SNP VWC2L 402117 hgsc.bcm.edu hg19 2 215440518 215440518 + Nonsense_Mutation SNP G G T novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . VWC2L NM_001080500 exon4 c.G643T p.E215X AAACGTGAATGCC . 305.0 93.0 211.0 0.0 . 40 . . . none . . PASS Atlas-SNP OGG1 4968 hgsc.bcm.edu hg19 3 9798228 9798228 + Missense_Mutation SNP T T A novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . OGG1 NM_016819 exon5 c.T821A p.I274N GGCACATTGCCCA . 79.0 31.0 77.0 0.0 . 57 . . . none . . PASS Atlas-SNP RAF1 5894 hgsc.bcm.edu hg19 3 12633229 12633229 + Missense_Mutation SNP T T A rs368807126 TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . RAF1 NM_002880 exon11 c.A1171T p.R391W CATTCCTGAAGGC . 102.0 31.0 77.0 0.0 . 66 . . . weak . . PASS Atlas-SNP TOP2B 7155 hgsc.bcm.edu hg19 3 25646332 25646332 + Missense_Mutation SNP C C A novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 TOP2B,rectum,carcinoma,0,1 TOP2B NM_001068 exon33 c.G4393T p.D1465Y CAGAATCTTCTTC . 142.0 54.0 82.0 1.0 . 98 . . . none . . PASS Atlas-SNP SCN10A 6336 hgsc.bcm.edu hg19 3 38835251 38835251 + Missense_Mutation SNP G G A rs140609990 bycluster TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . SCN10A NM_006514 exon1 c.C251T p.P84L TAGAACGGATCTA . 316.0 94.0 212.0 0.0 . 359 . . . weak G|1.000;A|0.000 0.000 PASS Atlas-SNP ATP6V1A 523 hgsc.bcm.edu hg19 3 113503595 113503595 + Missense_Mutation SNP C C G novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . ATP6V1A NM_001690 exon5 c.C479G p.S160W AGAACTCGCTTAT . 171.0 58.0 125.0 0.0 . 71 . . . none . . PASS Atlas-SNP RUFY3 22902 hgsc.bcm.edu hg19 4 71659564 71659564 + Missense_Mutation SNP A A G novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . RUFY3 NM_001037442 exon13 c.A1400G p.D467G AACAGGACTTTGG . 99.0 34.0 83.0 0.0 . 61 . . . none . . PASS Atlas-SNP TIGD2 166815 hgsc.bcm.edu hg19 4 90035227 90035227 + Nonsense_Mutation SNP G G T novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . TIGD2 NM_145715 exon1 c.G1102T p.E368X ATTTATGAAGTGT . 103.0 31.0 54.0 0.0 . 36 . . . none . . PASS Atlas-SNP PCDH18 54510 hgsc.bcm.edu hg19 4 138450855 138450855 + Silent SNP G G A novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . PCDH18 NM_019035 exon1 c.C2388T p.H796H ACTGTTGTGACTC . 97.0 44.0 69.0 0.0 . 229 . . . none . . PASS Atlas-SNP ABCE1 6059 hgsc.bcm.edu hg19 4 146041306 146041306 + Splice_Site SNP G G A novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . ABCE1 NM_002940 exon11 c.1144+1G>A . AAAATGGTAAGTT . 95.0 33.0 62.0 0.0 . 47 . . . none . . PASS Atlas-SNP DDR1 780 hgsc.bcm.edu hg19 6 30857025 30857025 + Missense_Mutation SNP G G A novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . DDR1 NM_001202523 exon4 c.G289A p.V97M GGGTCGGTGTTTC . 482.0 150.0 384.0 0.0 . 213 . . . none . . PASS Atlas-SNP PREP 5550 hgsc.bcm.edu hg19 6 105825364 105825364 + Missense_Mutation SNP C C G novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 PREP,NS,carcinoma,0,1 PREP NM_002726 exon3 c.G151C p.V51L ATGGCACAGTAAT . 173.0 62.0 100.0 0.0 . 65 . . . none . . PASS Atlas-SNP ROS1 6098 hgsc.bcm.edu hg19 6 117622147 117622147 + Missense_Mutation SNP T T G novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . ROS1 NM_002944 exon42 c.A6723C p.E2241D AAAGCTTTCATTT . 109.0 38.0 76.0 0.0 . 728 . . . none . . PASS Atlas-SNP POLM 27434 hgsc.bcm.edu hg19 7 44121926 44121926 + Missense_Mutation SNP G G T rs375526665 TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . POLM NM_013284 exon1 c.C112A p.R38S CCATGCGAGGCTC . 22.0 7.0 14.0 0.0 . 50 . . . weak . . PASS Atlas-SNP ASB15 142685 hgsc.bcm.edu hg19 7 123264837 123264837 + Missense_Mutation SNP C C A novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . ASB15 NM_080928 exon6 c.C666A p.H222Q TGGTCACTGTGAC . 83.0 35.0 61.0 0.0 . 94 . . . none . . PASS Atlas-SNP MGAM 8972 hgsc.bcm.edu hg19 7 141800677 141800677 + Missense_Mutation SNP T T G novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . MGAM NM_004668 exon45 c.T5262G p.D1754E GGATGATGGGCAA . 52.0 26.0 32.0 0.0 . 767 . . . none . . PASS Atlas-SNP SNTB1 6641 hgsc.bcm.edu hg19 8 121587444 121587444 + Nonsense_Mutation SNP G G A novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . SNTB1 NM_021021 exon4 c.C1018T p.Q340X TCCACTGTTTCTT . 219.0 62.0 170.0 0.0 . 54 . . . none . . PASS Atlas-SNP COL17A1 1308 hgsc.bcm.edu hg19 10 105793764 105793764 + Silent SNP A A G novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . COL17A1 NM_000494 exon52 c.T4095C p.A1365A AAAGTCAGCTCCC . 140.0 42.0 122.0 0.0 . 149 . . . none . . PASS Atlas-SNP PTPRE 5791 hgsc.bcm.edu hg19 10 129859261 129859261 + Silent SNP C C A novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . PTPRE NM_006504 exon8 c.C570A p.I190I CTACATCAATGCT . 109.0 38.0 87.0 0.0 . 132 . . . none . . PASS Atlas-SNP PAOX 196743 hgsc.bcm.edu hg19 10 135193909 135193909 + Silent SNP C C T novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . PAOX NM_207128 exon2 c.C588T p.G196G GAGCGGCACCCAC . 83.0 7.0 73.0 0.0 . 82 . . . none . . PASS Atlas-SNP GYS2 2998 hgsc.bcm.edu hg19 12 21757442 21757442 + Missense_Mutation SNP G G T novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . GYS2 NM_021957 exon1 c.C85A p.L29M AGAGCAGTAACTC . 346.0 175.0 207.0 0.0 . 110 . . . none . . PASS Atlas-SNP TSFM 10102 hgsc.bcm.edu hg19 12 58177005 58177005 + Missense_Mutation SNP C C T novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . TSFM NM_005726 exon2 c.C170T p.T57I GGAAAACAGGCTA . 337.0 96.0 215.0 0.0 . 26 . . . none . . PASS Atlas-SNP CCDC63 160762 hgsc.bcm.edu hg19 12 111321841 111321841 + Missense_Mutation SNP G G C novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . CCDC63 NM_152591 exon8 c.G861C p.K287N TCTCAAGGCAAAG . 296.0 144.0 170.0 0.0 . 89 . . . none . . PASS Atlas-SNP PTPN11 5781 hgsc.bcm.edu hg19 12 112892458 112892458 + Silent SNP T T C rs78376169 bycluster TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 PTPN11,NS,carcinoma,0,2 PTPN11 NM_080601 exon5 c.T616C p.L206L GAAACATTGGGTA . 120.0 6.0 61.0 0.0 . 623 . . . weak . . PASS Atlas-SNP MYH7 4625 hgsc.bcm.edu hg19 14 23886422 23886422 + Missense_Mutation SNP C C T novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . MYH7 NM_000257 exon32 c.G4459A p.A1487T CATAGGCGTTCTT . 257.0 77.0 234.0 0.0 . 349 . . . none . . PASS Atlas-SNP PLCB2 5330 hgsc.bcm.edu hg19 15 40594160 40594160 + Nonsense_Mutation SNP T T A novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . PLCB2 NM_004573 exon7 c.A580T p.K194X TCACTTTGCCTTT . 72.0 21.0 99.0 0.0 . 177 . . . none . . PASS Atlas-SNP GLDN 342035 hgsc.bcm.edu hg19 15 51693835 51693835 + Missense_Mutation SNP G G A novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . GLDN NM_181789 exon9 c.G1073A p.G358D TGAATGGCAGTTA . 197.0 76.0 176.0 0.0 . 54 . . . none . . PASS Atlas-SNP VPS13C 54832 hgsc.bcm.edu hg19 15 62221845 62221845 + Missense_Mutation SNP C C G novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . VPS13C NM_020821 exon51 c.G6141C p.K2047N ATACAGCTTGTCA . 82.0 30.0 76.0 0.0 . 506 . . . none . . PASS Atlas-SNP MYO9A 4649 hgsc.bcm.edu hg19 15 72192125 72192125 + Silent SNP T T G novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . MYO9A NM_006901 exon24 c.A3373C p.R1125R TCCATCTTGCTTG . 123.0 46.0 97.0 0.0 . 203 . . . none . . PASS Atlas-SNP SLX4 84464 hgsc.bcm.edu hg19 16 3641173 3641173 + Missense_Mutation SNP C C G novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . SLX4 NM_032444 exon12 c.G2466C p.M822I TGCCCACATTGAC . 291.0 79.0 247.0 0.0 . 173 . . . none . . PASS Atlas-SNP SRCAP 10847 hgsc.bcm.edu hg19 16 30732089 30732089 + Missense_Mutation SNP C C A novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . SRCAP NM_006662 exon20 c.C3043A p.P1015T AACAACCCACGGG . 275.0 93.0 223.0 0.0 . 298 . . . none . . PASS Atlas-SNP ZZEF1 23140 hgsc.bcm.edu hg19 17 3953114 3953114 + Missense_Mutation SNP C C T novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . ZZEF1 NM_015113 exon37 c.G5903A p.G1968E GAGTCCCCATCTG . 170.0 54.0 111.0 0.0 . 195 . . . none . . PASS Atlas-SNP QRICH2 84074 hgsc.bcm.edu hg19 17 74283337 74283337 + Missense_Mutation SNP T T A novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . QRICH2 NM_032134 exon7 c.A3449T p.Q1150L CTGTCTTGGCTCT . 118.0 31.0 74.0 0.0 . 143 . . . none . . PASS Atlas-SNP TBCD 6904 hgsc.bcm.edu hg19 17 80888515 80888515 + Missense_Mutation SNP G G C novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . TBCD NM_005993 exon33 c.G3109C p.E1037Q CTGAATGAGAGGT . 106.0 27.0 60.0 0.0 . 94 . . . none . . PASS Atlas-SNP HDHD2 84064 hgsc.bcm.edu hg19 18 44662721 44662721 + Silent SNP T T C novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . HDHD2 NM_032124 exon2 c.A90G p.E30E AAGAGCTTCCTGT . 221.0 83.0 159.0 0.0 . 12 . . . none . . PASS Atlas-SNP MYO5B 4645 hgsc.bcm.edu hg19 18 47500737 47500737 + Silent SNP C C T novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . MYO5B NM_001080467 exon10 c.G1305A p.G435G CAGGACCCCGATG . 92.0 35.0 108.0 0.0 . 178 . . . none . . PASS Atlas-SNP RFX2 5990 hgsc.bcm.edu hg19 19 6013026 6013026 + Missense_Mutation SNP C C T novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . RFX2 NM_000635 exon8 c.G870A p.M290I CTGCCGCATGGCC . 320.0 119.0 279.0 0.0 . 60 . . . none . . PASS Atlas-SNP ZNF99 7652 hgsc.bcm.edu hg19 19 22940806 22940806 + Silent SNP G G A novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 ZNF99,NS,carcinoma,0,1 ZNF99 NM_001080409 exon4 c.C1905T p.T635T TCTAAGGGTTGAG . 118.0 6.0 95.0 1.0 . 273 . . . none . . PASS Atlas-SNP GIPR 2696 hgsc.bcm.edu hg19 19 46184876 46184876 + Missense_Mutation SNP C C G novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . GIPR NM_000164 exon13 c.C1167G p.S389R GGTCAGCGTCCTC . 99.0 30.0 96.0 0.0 . 36 . . . none . . PASS Atlas-SNP SIGLEC9 27180 hgsc.bcm.edu hg19 19 51633170 51633170 + Missense_Mutation SNP C C G novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . SIGLEC9 NM_014441 exon7 c.C1226G p.A409G CTTGGGCAGAAGA . 142.0 38.0 141.0 0.0 . 85 . . . none . . PASS Atlas-SNP CD40 958 hgsc.bcm.edu hg19 20 44757638 44757638 + Missense_Mutation SNP G G C novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . CD40 NM_001250 exon9 c.G793C p.D265H CAGGAGGATGGCA . 208.0 43.0 120.0 0.0 . 33 . . . none . . PASS Atlas-SNP ZNFX1 57169 hgsc.bcm.edu hg19 20 47887763 47887763 + Missense_Mutation SNP T T C novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . ZNFX1 NM_021035 exon3 c.A586G p.S196G TGGAGCTACAAGC . 306.0 151.0 183.0 0.0 . 194 . . . none . . PASS Atlas-SNP GNAZ 2781 hgsc.bcm.edu hg19 22 23438484 23438484 + Missense_Mutation SNP A A G novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 GNAZ,NS,carcinoma,-1,1 GNAZ NM_002073 exon2 c.A602G p.D201G TGGTGGACGTGGG . 228.0 69.0 247.0 1.0 . 45 . . . none . . PASS Atlas-SNP CABIN1 23523 hgsc.bcm.edu hg19 22 24447425 24447425 + Silent SNP T T A novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . CABIN1 NM_001199281 exon8 c.T795A p.I265I GCCCATTCCTTTC . 56.0 24.0 58.0 0.0 . 153 . . . none . . PASS Atlas-SNP DEPDC5 9681 hgsc.bcm.edu hg19 22 32193641 32193641 + Nonsense_Mutation SNP A A T novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . DEPDC5 NM_001242897 exon13 c.A823T p.K275X ACCATTAAAAAAC . 69.0 28.0 58.0 0.0 . 266 . . . none . . PASS Atlas-SNP SOX10 6663 hgsc.bcm.edu hg19 22 38374016 38374016 + Silent SNP C C T novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . SOX10 NM_006941 exon3 c.G555A p.Q185Q CTCGCCCTGGGCG . 67.0 19.0 65.0 0.0 . 48 . . . none . . PASS Atlas-SNP MXRA5 25878 hgsc.bcm.edu hg19 X 3238719 3238719 + Silent SNP A A G novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . MXRA5 NM_015419 exon5 c.T5007C p.S1669S TGTTGTACTTGAT . 292.0 220.0 221.0 0.0 . 815 . . . none . . PASS Atlas-SNP CTPS2 56474 hgsc.bcm.edu hg19 X 16685795 16685795 + Silent SNP A A C novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . CTPS2 NM_001144002 exon12 c.T1242G p.L414L CAAGTTAAGGCAG . 85.0 58.0 67.0 0.0 . 49 . . . none . . PASS Atlas-SNP C10orf12 26148 hgsc.bcm.edu hg19 10 98741324 98741326 + In_Frame_Del DEL TTT TTT - novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 TTT TTT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . C10orf12 NM_015652 exon1 c.176_178del p.59_60del . . 108.0 37.0 79.0 0.0 . 94 . 0.342593 0 none . . PASS Atlas-INDEL OGG1 4968 hgsc.bcm.edu hg19 3 9798226 9798227 + Frame_Shift_Ins INS - - AA novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . OGG1 NM_016821 exon5 c.819_820insAA p.H273fs . . 86.0 28.0 80.0 0.0 . 57 . 0.325581 0 none . . PASS Atlas-INDEL ANAPC5 51433 hgsc.bcm.edu hg19 12 121746455 121746458 + Frame_Shift_Del DEL TTCT TTCT - novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 TTCT TTCT . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . ANAPC5 NM_016237 exon17 c.2094_2097del p.698_699del . . 299.0 132.0 220.0 0.0 . 60 . 0.441472 0 none . . PASS Atlas-INDEL GIGYF2 26058 hgsc.bcm.edu hg19 2 233681733 233681734 + Frame_Shift_Ins INS - - AGGAAAC novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . GIGYF2 NM_001103147 exon22 c.2424_2425insAGGAAAC p.R808fs . . 323.0 45.0 261.0 0.0 . 288 . 0.139319 0 none . . PASS Atlas-INDEL RAB27B 5874 hgsc.bcm.edu hg19 18 52555227 52555230 + Frame_Shift_Del DEL CCAA CCAA - novel TCGA-B3-3925-01A-01D-1458-08 TCGA-B3-3925-10A-01D-1458-08 CCAA CCAA . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq 5bb6b194-3bad-4d65-8345-c5a0161b4a0f acd62c81-b9cd-47ac-b708-52546a54aa37 . RAB27B NM_004163 exon5 c.344_347del p.115_116del . . 199.0 39.0 131.0 0.0 . 24 . 0.19598 0 none . . PASS Atlas-INDEL