Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
ZYG11B	79699	hgsc.bcm.edu	hg19	1	53236935	53236935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ZYG11B	NM_024646	exon3	c.C440A	p.T147N	CATTAACTCTCTC	.	73.0	24.0	169.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
SGIP1	84251	hgsc.bcm.edu	hg19	1	67138996	67138996	+	Missense_Mutation	SNP	C	C	A	rs142151342	alternate_allele	TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SGIP1	NM_032291	exon12	c.C593A	p.A198D	CCCTTGCTCCTCT	.	301.0	95.0	620.0	0.0	.	272	.	.	.	alt	C|1.000;G|0.000	.	PASS	Atlas-SNP
BCAR3	8412	hgsc.bcm.edu	hg19	1	94054731	94054731	+	Silent	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	BCAR3	NM_001261409	exon5	c.G732A	p.Q244Q	GCCACTCTGCTGG	.	94.0	35.0	61.0	0.0	.	62	.	.	.	none	.	.	PASS	Atlas-SNP
ATP1A1	476	hgsc.bcm.edu	hg19	1	116931576	116931576	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ATP1A1	NM_001160233	exon7	c.A689C	p.D230A	CTCCAGATTTCAC	.	89.0	38.0	193.0	0.0	.	87	.	.	.	none	.	.	PASS	Atlas-SNP
CELF3	11189	hgsc.bcm.edu	hg19	1	151678722	151678722	+	Silent	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	CELF3,caecum,carcinoma,0,1	CELF3	NM_007185	exon10	c.A1104G	p.Q368Q	CTGCTGTTGCTGC	.	35.0	3.0	13.0	0.0	.	49	.	.	.	none	.	.	PASS	Atlas-SNP
PGLYRP3	114771	hgsc.bcm.edu	hg19	1	153279661	153279661	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PGLYRP3	NM_052891	exon2	c.C138G	p.Y46X	GATGATGTAGGCC	.	74.0	23.0	42.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
CAPN13	92291	hgsc.bcm.edu	hg19	2	30955349	30955349	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	CAPN13	NM_144575	exon20	c.T1882A	p.F628I	TGGGGAAGCTGAC	.	52.0	13.0	33.0	0.0	.	70	.	.	.	none	.	.	PASS	Atlas-SNP
TRAK2	66008	hgsc.bcm.edu	hg19	2	202262967	202262967	+	Silent	SNP	G	G	A	rs201579398	bycluster	TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TRAK2	NM_015049	exon6	c.C591T	p.F197F	CTCATTGAACCGA	.	17.0	9.0	230.0	0.0	.	62	.	.	.	weak	G|0.999;A|0.001	0.001	PASS	Atlas-SNP
SP140	11262	hgsc.bcm.edu	hg19	2	231177371	231177371	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SP140	NM_007237	exon27	c.C2576T	p.A859V	TGTTTGCTATTCA	.	152.0	46.0	232.0	0.0	.	121	.	.	.	none	.	.	PASS	Atlas-SNP
IFT57	55081	hgsc.bcm.edu	hg19	3	107937434	107937434	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	IFT57	NM_018010	exon3	c.C442G	p.L148V	AATCAAGAACATA	.	47.0	7.0	200.0	0.0	.	44	.	.	.	none	.	.	PASS	Atlas-SNP
PVRL3	25945	hgsc.bcm.edu	hg19	3	110852638	110852638	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	PVRL3,colon,carcinoma,0,1	PVRL3	NM_015480	exon6	c.T1226G	p.V409G	CTAGTGTAGTGGG	.	38.0	3.0	354.0	1.0	.	78	.	.	.	none	.	.	PASS	Atlas-SNP
RARRES1	5918	hgsc.bcm.edu	hg19	3	158422600	158422600	+	Missense_Mutation	SNP	G	G	C	rs140091959	bycluster;byfrequency;alternate_allele	TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	RARRES1	NM_206963	exon4	c.C652G	p.L218V	TAGTGAGCTGTGC	.	44.0	11.0	94.0	0.0	.	22	.	.	.	alt	G|0.999;A|0.001	.	PASS	Atlas-SNP
EVC	2121	hgsc.bcm.edu	hg19	4	5721079	5721079	+	Silent	SNP	G	G	A	rs373072919		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	EVC	NM_153717	exon2	c.G279A	p.S93S	GATGTCGAAGGAC	.	431.0	178.0	266.0	0.0	.	90	.	.	.	weak	.	.	PASS	Atlas-SNP
KCTD8	386617	hgsc.bcm.edu	hg19	4	44449785	44449785	+	Silent	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	KCTD8	NM_198353	exon1	c.C756T	p.L252L	CTCGTTGAGCGTG	.	126.0	51.0	59.0	0.0	.	96	.	.	.	none	.	.	PASS	Atlas-SNP
LNX1	84708	hgsc.bcm.edu	hg19	4	54343092	54343092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	LNX1	NM_001126328	exon9	c.G1720A	p.A574T	CCACTGCCTCACT	.	274.0	46.0	308.0	0.0	.	139	.	.	.	none	.	.	PASS	Atlas-SNP
AGPAT9	84803	hgsc.bcm.edu	hg19	4	84457815	84457815	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	AGPAT9	NM_001256421	exon2	c.T40C	p.W14R	TCCACCTGGCTGA	.	214.0	44.0	80.0	0.0	.	41	.	.	.	none	.	.	PASS	Atlas-SNP
SEMA5A	9037	hgsc.bcm.edu	hg19	5	9119220	9119220	+	Silent	SNP	A	A	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SEMA5A	NM_003966	exon15	c.T1815A	p.S605S	GCAGGGAGACCAC	.	79.0	20.0	38.0	0.0	.	236	.	.	.	none	.	.	PASS	Atlas-SNP
RAI14	26064	hgsc.bcm.edu	hg19	5	34757668	34757668	+	Silent	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	RAI14	NM_001145525	exon5	c.C141T	p.A47A	GGGGGCCAGTGCC	.	155.0	28.0	137.0	0.0	.	100	.	.	.	none	.	.	PASS	Atlas-SNP
PARP8	79668	hgsc.bcm.edu	hg19	5	50123848	50123848	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PARP8	NM_001178055	exon21	c.T2048A	p.F683Y	CCAATTTTAGAGC	.	125.0	41.0	217.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
NR2F1	7025	hgsc.bcm.edu	hg19	5	92929424	92929424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	NR2F1	NM_005654	exon3	c.C1148A	p.S383Y	CCTCCTCCGTCAT	.	414.0	121.0	292.0	0.0	.	56	.	.	.	none	.	.	PASS	Atlas-SNP
POU5F2	134187	hgsc.bcm.edu	hg19	5	93076682	93076682	+	Silent	SNP	A	A	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	POU5F2	NM_153216	exon1	c.T588A	p.L196L	GCCCAGAAGGTTC	.	208.0	66.0	166.0	0.0	.	10	.	.	.	none	.	.	PASS	Atlas-SNP
FNIP1	96459	hgsc.bcm.edu	hg19	5	131042155	131042155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FNIP1	NM_133372	exon9	c.G863T	p.R288L	CGCCAACGTCGCT	.	68.0	15.0	201.0	0.0	.	104	.	.	.	none	.	.	PASS	Atlas-SNP
HLA-DQA2	3118	hgsc.bcm.edu	hg19	6	32713781	32713781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	HLA-DQA2	NM_020056	exon3	c.C545T	p.S182F	TCCCTTCTGCTGA	.	286.0	92.0	417.0	1.0	.	27	.	.	.	none	.	.	PASS	Atlas-SNP
LEMD2	221496	hgsc.bcm.edu	hg19	6	33748926	33748926	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	LEMD2	NM_181336	exon4	c.T858G	p.N286K	CTCAAAATTACCT	.	152.0	49.0	115.0	0.0	.	20	.	.	.	none	.	.	PASS	Atlas-SNP
TTBK1	84630	hgsc.bcm.edu	hg19	6	43251695	43251695	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TTBK1	NM_032538	exon14	c.C3217A	p.L1073M	GGCTCACTGTCGG	.	121.0	46.0	85.0	0.0	.	124	.	.	.	none	.	.	PASS	Atlas-SNP
ROS1	6098	hgsc.bcm.edu	hg19	6	117746764	117746764	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ROS1	NM_002944	exon1	c.G56C	p.C19S	CATAGGCAGCCAA	.	135.0	41.0	287.0	0.0	.	728	.	.	.	none	.	.	PASS	Atlas-SNP
TMEM184A	202915	hgsc.bcm.edu	hg19	7	1590513	1590513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TMEM184A	NM_001097620	exon3	c.C325T	p.L109F	GGAGGAGGAGGCT	.	200.0	47.0	120.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
TFR2	7036	hgsc.bcm.edu	hg19	7	100228607	100228607	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TFR2	NM_003227	exon9	c.G1175A	p.G392D	CCGGGGCCCAGGT	.	83.0	23.0	34.0	0.0	.	53	.	.	.	none	.	.	PASS	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	hg19	7	151882674	151882674	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	MLL3	NM_170606	exon34	c.A5051C	p.K1684T	CTTGCTTTTCTCC	.	131.0	13.0	206.0	0.0	.	1564	.	.	.	none	.	.	PASS	Atlas-SNP
AGPAT5	55326	hgsc.bcm.edu	hg19	8	6614714	6614714	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	AGPAT5	NM_018361	exon8	c.T900A	p.D300E	ACCAGATCCAGAA	.	15.0	8.0	91.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
TNKS	8658	hgsc.bcm.edu	hg19	8	9413684	9413684	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	TNKS_ENST00000310430,NS,carcinoma,-1,2	TNKS	NM_003747	exon1	c.C235G	p.R79G	AGGCCCCGATCCC	.	103.0	27.0	75.0	0.0	.	198	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA1967	57805	hgsc.bcm.edu	hg19	8	22464154	22464154	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	KIAA1967	NM_021174	exon4	c.T185A	p.V62D	GTATTGTTACCAG	.	159.0	51.0	109.0	0.0	.	72	.	.	.	none	.	.	PASS	Atlas-SNP
KCNS2	3788	hgsc.bcm.edu	hg19	8	99441267	99441267	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	KCNS2	NM_020697	exon2	c.G1060T	p.E354X	AAGGAGGAGAACG	.	202.0	51.0	148.0	0.0	.	93	.	.	.	none	.	.	PASS	Atlas-SNP
FAM135B	51059	hgsc.bcm.edu	hg19	8	139164000	139164000	+	Silent	SNP	G	G	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FAM135B	NM_015912	exon13	c.C2718A	p.G906G	AGGCATGCCCTTT	.	335.0	98.0	307.0	0.0	.	423	.	.	.	none	.	.	PASS	Atlas-SNP
FAM135B	51059	hgsc.bcm.edu	hg19	8	139164004	139164004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FAM135B	NM_015912	exon13	c.A2714G	p.K905R	ATGCCCTTTGGGG	.	338.0	94.0	310.0	0.0	.	423	.	.	.	none	.	.	PASS	Atlas-SNP
UNC13B	10497	hgsc.bcm.edu	hg19	9	35375163	35375163	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	UNC13B	NM_006377	exon13	c.A1333G	p.M445V	TCTGCAATGGCTA	.	369.0	223.0	447.0	1.0	.	153	.	.	.	none	.	.	PASS	Atlas-SNP
ABL1	25	hgsc.bcm.edu	hg19	9	133748371	133748371	+	Silent	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ABL1	NM_007313	exon6	c.C1089T	p.A363A	CATGGCCACTCAG	.	143.0	90.0	137.0	0.0	.	1632	.	.	.	none	.	.	PASS	Atlas-SNP
NODAL	4838	hgsc.bcm.edu	hg19	10	72195424	72195424	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	NODAL	NM_018055	exon2	c.A509T	p.E170V	TGCTTCTCCAGGG	.	122.0	38.0	74.0	0.0	.	32	.	.	.	none	.	.	PASS	Atlas-SNP
NOLC1	9221	hgsc.bcm.edu	hg19	10	103917239	103917239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	NOLC1	NM_004741	exon4	c.C368T	p.A123V	CCAAAGCATCAGA	.	75.0	21.0	95.0	0.0	.	61	.	.	.	none	.	.	PASS	Atlas-SNP
BRSK2	9024	hgsc.bcm.edu	hg19	11	1466623	1466623	+	Silent	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	BRSK2	NM_001256630	exon10	c.C1050T	p.D350D	GCTGGACAGCATG	.	58.0	24.0	43.0	0.0	.	97	.	.	.	none	.	.	PASS	Atlas-SNP
EIF3M	10480	hgsc.bcm.edu	hg19	11	32623898	32623898	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	EIF3M	NM_006360	exon11	c.A1078T	p.N360Y	AAACAAAATCTGA	.	22.0	10.0	173.0	0.0	.	37	.	.	.	none	.	.	PASS	Atlas-SNP
TMX2	51075	hgsc.bcm.edu	hg19	11	57480106	57480106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TMX2	NM_015959	exon1	c.C16A	p.P6T	TTGGCACCTCTAA	.	76.0	27.0	59.0	0.0	.	29	.	.	.	none	.	.	PASS	Atlas-SNP
FAU	2197	hgsc.bcm.edu	hg19	11	64889268	64889268	+	Silent	SNP	G	G	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FAU	NM_001997	exon2	c.C18A	p.R6R	CTGGGCGCGGACA	.	160.0	39.0	110.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
SIK2	23235	hgsc.bcm.edu	hg19	11	111590501	111590501	+	Silent	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SIK2	NM_015191	exon10	c.C1269T	p.V423V	TTAGGTCAATGGC	.	59.0	21.0	45.0	0.0	.	89	.	.	.	none	.	.	PASS	Atlas-SNP
OAF	220323	hgsc.bcm.edu	hg19	11	120097580	120097580	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	OAF	NM_178507	exon3	c.A422C	p.H141P	ATCTGCACATGGA	.	182.0	60.0	142.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
OAF	220323	hgsc.bcm.edu	hg19	11	120097581	120097581	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	OAF	NM_178507	exon3	c.C423A	p.H141Q	TCTGCACATGGAT	.	183.0	57.0	139.0	0.0	.	12	.	.	.	none	.	.	PASS	Atlas-SNP
SMARCC2	6601	hgsc.bcm.edu	hg19	12	56558312	56558312	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SMARCC2	NM_003075	exon27	c.A3343C	p.N1115H	GCAGGTTAGGAGG	.	259.0	113.0	123.0	0.0	.	212	.	.	.	none	.	.	PASS	Atlas-SNP
GLI1	2735	hgsc.bcm.edu	hg19	12	57861143	57861143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	GLI1,NS,carcinoma,-1,1	GLI1	NM_005269	exon9	c.C940A	p.R314S	TACTCACGCCTCG	.	190.0	38.0	123.0	0.0	.	141	.	.	.	none	.	.	PASS	Atlas-SNP
C12orf66	144577	hgsc.bcm.edu	hg19	12	64615826	64615826	+	Silent	SNP	G	G	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	C12orf66	NM_152440	exon1	c.C192G	p.A64A	CTTCTCGGCCGCG	.	60.0	18.0	36.0	0.0	.	28	.	.	.	none	.	.	PASS	Atlas-SNP
PEBP1	5037	hgsc.bcm.edu	hg19	12	118577333	118577333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PEBP1	NM_002567	exon3	c.G323A	p.G108D	ATGTGGGCTCGGG	.	249.0	101.0	193.0	0.0	.	13	.	.	.	none	.	.	PASS	Atlas-SNP
RNF31	55072	hgsc.bcm.edu	hg19	14	24617213	24617213	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	RNF31	NM_017999	exon2	c.C221G	p.T74R	TGTCCACGGCTCT	.	176.0	55.0	127.0	0.0	.	95	.	.	.	none	.	.	PASS	Atlas-SNP
KIAA0391	9692	hgsc.bcm.edu	hg19	14	35593087	35593087	+	Silent	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	KIAA0391	NM_014672	exon2	c.T636C	p.G212G	TAGAGGTTACAGT	.	69.0	4.0	146.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
SERPINA1	5265	hgsc.bcm.edu	hg19	14	94849213	94849213	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SERPINA1	NM_001127701	exon4	c.A362C	p.Q121P	AGTTCCTGGAAGC	.	122.0	29.0	101.0	0.0	.	51	.	.	.	none	.	.	PASS	Atlas-SNP
WDR20	91833	hgsc.bcm.edu	hg19	14	102675938	102675938	+	Silent	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	WDR20	NM_001242417	exon4	c.T1524C	p.D508D	GAAAGATCACAAG	.	239.0	78.0	204.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
PLCB2	5330	hgsc.bcm.edu	hg19	15	40590557	40590557	+	Missense_Mutation	SNP	G	G	A	rs201305253		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PLCB2	NM_004573	exon11	c.C1022T	p.S341L	TCAGCCGAGGAGA	.	125.0	31.0	100.0	0.0	.	177	.	.	.	weak	G|0.999;A|0.001	0.001	PASS	Atlas-SNP
ANKDD1A	348094	hgsc.bcm.edu	hg19	15	65239709	65239709	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ANKDD1A	NM_182703	exon13	c.G1247T	p.W416L	TGCTGTGGCGGCT	.	65.0	22.0	53.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
FAM154B	283726	hgsc.bcm.edu	hg19	15	82574679	82574679	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FAM154B	NM_001008226	exon3	c.A473C	p.H158P	TACCTCATCAGCT	.	51.0	9.0	370.0	0.0	.	50	.	.	.	none	.	.	PASS	Atlas-SNP
PALB2	79728	hgsc.bcm.edu	hg19	16	23646407	23646407	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PALB2	NM_024675	exon4	c.T1460A	p.V487D	GAGCTGACTTTAG	.	179.0	89.0	403.0	0.0	.	108	.	.	.	none	.	.	PASS	Atlas-SNP
CYB5D1	124637	hgsc.bcm.edu	hg19	17	7762716	7762716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	CYB5D1	NM_144607	exon4	c.C473T	p.S158F	TGGAGTCCATATG	.	111.0	24.0	107.0	0.0	.	16	.	.	.	none	.	.	PASS	Atlas-SNP
ERBB2	2064	hgsc.bcm.edu	hg19	17	37876080	37876080	+	Silent	SNP	A	A	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ERBB2	NM_004448	exon16	c.A1939C	p.R647R	GAGCAGAGAGCCA	.	471.0	93.0	243.0	0.0	.	429	.	.	.	none	.	.	PASS	Atlas-SNP
ATXN7L3	56970	hgsc.bcm.edu	hg19	17	42275086	42275086	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ATXN7L3	NM_020218	exon2	c.G64T	p.E22X	ATATCTCCTGAGC	.	328.0	58.0	159.0	0.0	.	31	.	.	.	none	.	.	PASS	Atlas-SNP
ABCA6	23460	hgsc.bcm.edu	hg19	17	67108373	67108373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	ABCA6,middle_lobe,carcinoma,0,1	ABCA6	NM_080284	exon16	c.G2083A	p.G695S	AAGAACCTGCACA	.	63.0	28.0	548.0	0.0	.	210	.	.	.	none	.	.	PASS	Atlas-SNP
SPHK1	8877	hgsc.bcm.edu	hg19	17	74382029	74382029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	SPHK1	NM_021972	exon3	c.G16A	p.G6S	GTGGTCGGTTGCG	.	38.0	19.0	23.0	0.0	.	24	.	.	.	none	.	.	PASS	Atlas-SNP
ACSBG2	81616	hgsc.bcm.edu	hg19	19	6177251	6177251	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	ACSBG2,NS,carcinoma,0,4	ACSBG2	NM_030924	exon8	c.T750G	p.I250M	GTGGATTGCAGGA	.	72.0	5.0	76.0	0.0	.	83	.	.	.	none	.	.	PASS	Atlas-SNP
PRKCSH	5589	hgsc.bcm.edu	hg19	19	11558373	11558373	+	Silent	SNP	A	A	G	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	PRKCSH,colon,carcinoma,0,1	PRKCSH	NM_001001329	exon11	c.A969G	p.E323E	GGAGGAAGAAGAG	.	52.0	5.0	43.0	0.0	.	55	.	.	.	none	.	.	PASS	Atlas-SNP
ATP4A	495	hgsc.bcm.edu	hg19	19	36050918	36050918	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ATP4A	NM_000704	exon7	c.C845A	p.A282E	AGCGATGCGATGC	.	257.0	72.0	167.0	0.0	.	123	.	.	.	none	.	.	PASS	Atlas-SNP
UBOX5	22888	hgsc.bcm.edu	hg19	20	3090943	3090943	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	UBOX5	NM_001267584	exon5	c.C1430T	p.P477L	GGCCCAGGATGCT	.	253.0	97.0	165.0	0.0	.	47	.	.	.	none	.	.	PASS	Atlas-SNP
ZSWIM1	90204	hgsc.bcm.edu	hg19	20	44512145	44512145	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ZSWIM1	NM_080603	exon2	c.A914T	p.N305I	AGAACAATCATGC	.	330.0	103.0	207.0	0.0	.	35	.	.	.	none	.	.	PASS	Atlas-SNP
GRAMD4	23151	hgsc.bcm.edu	hg19	22	47068788	47068788	+	Missense_Mutation	SNP	G	G	A	rs371794625		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	GRAMD4	NM_015124	exon13	c.G1133A	p.R378H	TTAAACGCTGCCC	.	117.0	42.0	77.0	0.0	.	53	.	.	.	weak	.	.	PASS	Atlas-SNP
TBL1X	6907	hgsc.bcm.edu	hg19	X	9652170	9652170	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	TBL1X	NM_001139466	exon6	c.T299C	p.L100P	CCGCCCTCATCTC	.	91.0	4.0	65.0	0.0	.	103	.	.	.	none	.	.	PASS	Atlas-SNP
CTAGE6	340307	hgsc.bcm.edu	hg19	7	143452754	143452754	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	.	NM_178561	exon1	c.1999delG	p.D667fs	.	.	266.0	32.0	599.0	0.0	.	.	.	0.120301	0	none	.	.	PASS	Atlas-INDEL
FAM179B	23116	hgsc.bcm.edu	hg19	14	45433529	45433529	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	FAM179B	NM_015091	exon1	c.1904delA	p.H635fs	.	.	59.0	19.0	114.0	0.0	.	115	.	0.322034	0	none	.	.	PASS	Atlas-INDEL
ISLR2	57611	hgsc.bcm.edu	hg19	15	74425252	74425252	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	ISLR2,colon,carcinoma,0,1	ISLR2	NM_001130136	exon4	c.156delC	p.N52fs	.	.	234.0	76.0	171.0	0.0	.	78	.	0.324786	0	none	.	.	PASS	Atlas-INDEL
IRF2BP2	359948	hgsc.bcm.edu	hg19	1	234743056	234743058	+	In_Frame_Del	DEL	AGC	AGC	-	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	AGC	AGC	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	IRF2BP2	NM_182972	exon2	c.1590_1592del	p.530_531del	.	.	313.0	74.0	217.0	0.0	.	37	.	0.236422	0	none	.	.	PASS	Atlas-INDEL
ARMC4	55130	hgsc.bcm.edu	hg19	10	28257893	28257893	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ARMC4	NM_018076	exon9	c.1198delC	p.P400fs	.	.	177.0	24.0	513.0	0.0	.	177	.	0.135593	0	none	.	.	PASS	Atlas-INDEL
PCDHGA12	26025	hgsc.bcm.edu	hg19	5	140811171	140811177	+	Frame_Shift_Del	DEL	GGTATGT	GGTATGT	-	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	GGTATGT	GGTATGT	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	PCDHGA12	NM_032094	exon1	c.844_850del	p.282_284del	.	.	254.0	63.0	177.0	0.0	.	271	.	0.248031	0	none	.	.	PASS	Atlas-INDEL
CTAGE15	441294	hgsc.bcm.edu	hg19	7	143270908	143270908	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	.	NM_001008747	exon1	c.1997delA	p.N666fs	.	.	260.0	27.0	578.0	0.0	.	.	.	0.103846	0	none	.	.	PASS	Atlas-INDEL
MYO1H	283446	hgsc.bcm.edu	hg19	12	109834319	109834319	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	MYO1H	NM_001101421	exon3	c.372delG	p.V124fs	.	.	135.0	21.0	100.0	0.0	.	98	.	0.155556	0	none	.	.	PASS	Atlas-INDEL
ZCCHC8	55596	hgsc.bcm.edu	hg19	12	122964832	122964833	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ZCCHC8	NM_017612	exon11	c.1045_1046insT	p.G349fs	.	.	59.0	26.0	44.0	0.0	.	56	.	0.440678	0	none	.	.	PASS	Atlas-INDEL
ITM2B	9445	hgsc.bcm.edu	hg19	13	48830432	48830433	+	In_Frame_Ins	INS	-	-	CAA	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	ITM2B	NM_021999	exon3	c.366_367insCAA	p.F122delinsFQ	.	.	82.0	26.0	161.0	0.0	.	24	.	0.317073	0	none	.	.	PASS	Atlas-INDEL
LINS	55180	hgsc.bcm.edu	hg19	15	101114034	101114034	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-4114-01A-01D-1252-08	TCGA-B9-4114-10A-01D-1252-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	cc2df365-fa55-4871-8e93-807b85a7e7d0	4acde02c-30d6-41f7-9fb2-b689951809b9	.	LINS	NM_001040616	exon5	c.1045delT	p.L349fs	.	.	213.0	57.0	281.0	0.0	.	62	.	0.267606	0	none	.	.	PASS	Atlas-INDEL