Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_File Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID COSMIC_Codon COSMIC_Gene Transcript_Id Exon ChromChange AAChange Genome_Plus_Minus_10_Bp Drug_Target TTotCov TVarCov NTotCov NVarCov dbSNPPopFreq COSMIC_Gene_Freq COSMIC_Site_Freq TVarRat NVarRat dbSNP_Strength dbSNP_AF dbSNP_PopFreq Confidence Algorithm ZBTB8OS 339487 hgsc.bcm.edu hg19 1 33099257 33099257 + Missense_Mutation SNP A A C novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . ZBTB8OS NM_178547 exon4 c.T352G p.F118V GTATGAAGAATTC . 70.0 40.0 104.0 0.0 . 9 . . . none . . PASS Atlas-SNP RLF 6018 hgsc.bcm.edu hg19 1 40701983 40701983 + Missense_Mutation SNP G G A novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . RLF NM_012421 exon8 c.G1609A p.D537N AAAAGAGACAAAA . 101.0 34.0 147.0 0.0 . 152 . . . none . . PASS Atlas-SNP TMEM53 79639 hgsc.bcm.edu hg19 1 45120714 45120714 + Silent SNP G G T novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . TMEM53 NM_024587 exon3 c.C351A p.V117V CAGCATGACGCCA . 46.0 26.0 82.0 0.0 . 40 . . . none . . PASS Atlas-SNP DAP3 7818 hgsc.bcm.edu hg19 1 155695186 155695186 + Missense_Mutation SNP G G A novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . DAP3 NM_033657 exon5 c.G284A p.S95N CATTCAGTGAAGC . 182.0 66.0 165.0 0.0 . 46 . . . none . . PASS Atlas-SNP TIPRL 261726 hgsc.bcm.edu hg19 1 168168189 168168189 + Silent SNP G G A novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . TIPRL NM_152902 exon6 c.G645A p.T215T ATATACGTCACGA . 51.0 11.0 40.0 0.0 . 16 . . . none . . PASS Atlas-SNP RFWD2 64326 hgsc.bcm.edu hg19 1 175914297 175914297 + Silent SNP A A G novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . RFWD2 NM_022457 exon20 c.T2188C p.L730L ATACCAATTCTAG . 77.0 4.0 52.0 0.0 . 67 . . . none . . PASS Atlas-SNP KLHDC8A 55220 hgsc.bcm.edu hg19 1 205312513 205312513 + Missense_Mutation SNP C C T novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . KLHDC8A NM_018203 exon2 c.G220A p.V74I CGGTGACGGCCAC . 174.0 52.0 172.0 0.0 . 31 . . . none . . PASS Atlas-SNP HEATR5B 54497 hgsc.bcm.edu hg19 2 37267620 37267620 + Missense_Mutation SNP A A T novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . HEATR5B NM_019024 exon20 c.T2898A p.S966R CGGACCACTAGAA . 125.0 38.0 120.0 0.0 . 185 . . . none . . PASS Atlas-SNP UGGT1 56886 hgsc.bcm.edu hg19 2 128918714 128918714 + Silent SNP C C A novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . UGGT1 NM_020120 exon25 c.C2697A p.I899I ACAGATCATTGGG . 139.0 45.0 135.0 0.0 . 126 . . . none . . PASS Atlas-SNP MGAT5 4249 hgsc.bcm.edu hg19 2 135206357 135206357 + Missense_Mutation SNP G G A novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . MGAT5 NM_002410 exon16 c.G2165A p.R722K ACCAGAGGGTCTG . 113.0 36.0 100.0 0.0 . 84 . . . none . . PASS Atlas-SNP FMNL2 114793 hgsc.bcm.edu hg19 2 153471511 153471511 + Silent SNP T T A novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . FMNL2 NM_052905 exon12 c.T1209A p.S403S CATTTCTCATGTA . 106.0 38.0 61.0 0.0 . 75 . . . none . . PASS Atlas-SNP GPD2 2820 hgsc.bcm.edu hg19 2 157367411 157367411 + Silent SNP C C T novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . GPD2 NM_001083112 exon4 c.C378T p.I126I GGCCATCATGAAG . 277.0 76.0 256.0 0.0 . 59 . . . none . . PASS Atlas-SNP TTN 7273 hgsc.bcm.edu hg19 2 179575504 179575504 + Silent SNP G G A rs375083775 TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 TTN_ENST00000356127,rectum,carcinoma,0,1 TTN NM_001267550 exon98 c.C28320T p.G9440G CTTTCCGCCACTT . 182.0 52.0 144.0 2.0 . 18412 . . . weak . . PASS Atlas-SNP ACADL 33 hgsc.bcm.edu hg19 2 211081192 211081192 + Missense_Mutation SNP C C T novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . ACADL NM_001608 exon4 c.G415A p.G139S CAATACCTGAATG . 112.0 44.0 105.0 0.0 . 38 . . . none . . PASS Atlas-SNP DGKD 8527 hgsc.bcm.edu hg19 2 234363455 234363455 + Missense_Mutation SNP G G T novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . DGKD NM_152879 exon19 c.G2311T p.G771C GGCATTGGCCTGG . 148.0 41.0 124.0 0.0 . 106 . . . none . . PASS Atlas-SNP CCDC13 152206 hgsc.bcm.edu hg19 3 42793447 42793447 + Missense_Mutation SNP T T G novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . CCDC13 NM_144719 exon5 c.A584C p.Q195P CCCATCTGGGCCC . 94.0 33.0 135.0 0.0 . 71 . . . none . . PASS Atlas-SNP STAB1 23166 hgsc.bcm.edu hg19 3 52544437 52544437 + Missense_Mutation SNP G G A novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 STAB1,colon,carcinoma,0,1 STAB1 NM_015136 exon25 c.G2701A p.V901I GGCCGCGTCTGTG . 70.0 37.0 119.0 0.0 . 178 . . . none . . PASS Atlas-SNP EPHB1 2047 hgsc.bcm.edu hg19 3 134670526 134670526 + Missense_Mutation SNP T T A novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . EPHB1 NM_004441 exon3 c.T437A p.F146Y AGAGCTTCTCCCA . 222.0 112.0 273.0 0.0 . 519 . . . none . . PASS Atlas-SNP MED12L 116931 hgsc.bcm.edu hg19 3 151078359 151078359 + Missense_Mutation SNP A A G novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . MED12L NM_053002 exon19 c.A2818G p.S940G TCATGTAGCCACC . 239.0 125.0 280.0 0.0 . 271 . . . none . . PASS Atlas-SNP NAF1 92345 hgsc.bcm.edu hg19 4 164050121 164050121 + Silent SNP G G A novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . NAF1 NM_138386 exon8 c.C1413T p.P471P GGGAGGGGGTGGG . 22.0 16.0 26.0 0.0 . 69 . . . none . . PASS Atlas-SNP TERT 7015 hgsc.bcm.edu hg19 5 1255515 1255515 + Missense_Mutation SNP C C A novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . TERT NM_198253 exon14 c.G3044T p.C1015F AGCACACATGCGT . 51.0 14.0 49.0 0.0 . 2594 . . . none . . PASS Atlas-SNP CCNI2 645121 hgsc.bcm.edu hg19 5 132084160 132084160 + Nonsense_Mutation SNP C C A novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . CCNI2 NM_001039780 exon2 c.C551A p.S184X TGATTTCAGTGAA . 163.0 47.0 122.0 0.0 . 11 . . . none . . PASS Atlas-SNP OR5V1 81696 hgsc.bcm.edu hg19 6 29323498 29323498 + Missense_Mutation SNP G G C novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . OR5V1 NM_030876 exon1 c.C475G p.H159D CTGTATGCACCAC . 67.0 37.0 104.0 0.0 . 63 . . . none . . PASS Atlas-SNP RIMS1 22999 hgsc.bcm.edu hg19 6 73108662 73108662 + Missense_Mutation SNP T T G novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . RIMS1 NM_014989 exon33 c.T4726G p.Y1576D GCTCCATATGTCA . 39.0 15.0 57.0 0.0 . 278 . . . none . . PASS Atlas-SNP ANLN 54443 hgsc.bcm.edu hg19 7 36445953 36445953 + Silent SNP T T C novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . ANLN NM_018685 exon4 c.T651C p.N217N TGTAAATCACTCA . 143.0 48.0 138.0 0.0 . 101 . . . none . . PASS Atlas-SNP MUC17 140453 hgsc.bcm.edu hg19 7 100681165 100681165 + Silent SNP T T C novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . MUC17 NM_001040105 exon3 c.T6468C p.Y2156Y AACTTATAGTGAC . 383.0 130.0 335.0 0.0 . 804 . . . none . . PASS Atlas-SNP MET 4233 hgsc.bcm.edu hg19 7 116340025 116340025 + Missense_Mutation SNP T T C novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . MET NM_000245 exon2 c.T887C p.L296P TGCCTCTGGAGTG . 199.0 57.0 191.0 0.0 . 412 . . . none . . PASS Atlas-SNP PTPRZ1 5803 hgsc.bcm.edu hg19 7 121651531 121651531 + Silent SNP C C T rs143422308 alternate_allele TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . PTPRZ1 NM_002851 exon12 c.C2431T p.L811L TCCATCCTGTCTT . 398.0 114.0 344.0 0.0 . 605 . . . alt C|1.000;G|0.000 . PASS Atlas-SNP WRN 7486 hgsc.bcm.edu hg19 8 30938567 30938567 + Missense_Mutation SNP G G A novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . WRN NM_000553 exon9 c.G1024A p.V342I ATTCACGTTGAAG . 142.0 31.0 114.0 0.0 . 116 . . . none . . PASS Atlas-SNP EMC2 9694 hgsc.bcm.edu hg19 8 109489022 109489022 + Silent SNP C C T novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . . NM_014673 exon9 c.C603T p.T201T GTATACCCAAGGT . 85.0 27.0 67.0 0.0 . . . . . none . . PASS Atlas-SNP FAM49B 51571 hgsc.bcm.edu hg19 8 130883632 130883632 + Nonsense_Mutation SNP C C A novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 FAM49B,colon,carcinoma,0,1 FAM49B NM_016623 exon4 c.G184T p.E62X GTATTTCGTGGCC . 153.0 56.0 122.0 0.0 . 36 . . . none . . PASS Atlas-SNP PHF20L1 51105 hgsc.bcm.edu hg19 8 133816926 133816926 + Missense_Mutation SNP G G C novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . PHF20L1 NM_016018 exon8 c.G788C p.R263T ACAAGAGGAAAAA . 164.0 48.0 128.0 0.0 . 129 . . . none . . PASS Atlas-SNP FBXO10 26267 hgsc.bcm.edu hg19 9 37537307 37537307 + Missense_Mutation SNP G G T novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . FBXO10 NM_012166 exon3 c.C1219A p.L407M AGTTCAGCACTAG . 32.0 11.0 24.0 0.0 . 75 . . . none . . PASS Atlas-SNP KIAA1217 56243 hgsc.bcm.edu hg19 10 24508666 24508666 + Missense_Mutation SNP G G T novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . KIAA1217 NM_019590 exon2 c.G182T p.R61L CTTCCCGCAATAT . 106.0 25.0 81.0 0.0 . 235 . . . none . . PASS Atlas-SNP EPC1 80314 hgsc.bcm.edu hg19 10 32580239 32580239 + Missense_Mutation SNP C C G novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . EPC1 NM_025209 exon6 c.G827C p.G276A TAGTCGCCCAAAT . 176.0 31.0 102.0 0.0 . 74 . . . none . . PASS Atlas-SNP OSBPL5 114879 hgsc.bcm.edu hg19 11 3141834 3141834 + Missense_Mutation SNP G G C novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . OSBPL5 NM_020896 exon6 c.C423G p.S141R GGTCCAGCTCTTC . 64.0 36.0 94.0 0.0 . 78 . . . none . . PASS Atlas-SNP OR8H3 390152 hgsc.bcm.edu hg19 11 55890629 55890629 + Missense_Mutation SNP A A G novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . OR8H3 NM_001005201 exon1 c.A781G p.K261E TACTTAAAGCCAA . 121.0 58.0 168.0 0.0 . 92 . . . none . . PASS Atlas-SNP CADM1 23705 hgsc.bcm.edu hg19 11 115080343 115080343 + Silent SNP G G T novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 CADM1,NS,carcinoma,0,6 CADM1 NM_014333 exon8 c.C1029A p.T343T GGTGGTGGTTGTT . 48.0 4.0 43.0 0.0 . 74 . . . none . . PASS Atlas-SNP IFLTD1 160492 hgsc.bcm.edu hg19 12 25702289 25702289 + Missense_Mutation SNP C C A novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . IFLTD1 NM_001145728 exon3 c.G281T p.G94V CAGCTACCTACAG . 70.0 19.0 78.0 0.0 . 121 . . . none . . PASS Atlas-SNP ALG10B 144245 hgsc.bcm.edu hg19 12 38714192 38714192 + Missense_Mutation SNP T T C novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . ALG10B NM_001013620 exon3 c.T599C p.V200A GGAATGTCATTGC . 442.0 140.0 418.0 0.0 . 58 . . . none . . PASS Atlas-SNP MLL2 8085 hgsc.bcm.edu hg19 12 49427714 49427714 + Missense_Mutation SNP T T C rs372758101 TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . MLL2 NM_003482 exon39 c.A10774G p.M3592V CTGCCATGAGATT . 9.0 5.0 0.0 0.0 . 1173 . . . weak . . PASS Atlas-SNP GCN1L1 10985 hgsc.bcm.edu hg19 12 120582190 120582190 + Silent SNP G G T novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . GCN1L1 NM_006836 exon42 c.C5415A p.I1805I CATGGAGATAACC . 93.0 29.0 75.0 0.0 . 207 . . . none . . PASS Atlas-SNP PROSER1 80209 hgsc.bcm.edu hg19 13 39596542 39596542 + Nonsense_Mutation SNP A A T novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . . NM_025138 exon9 c.T651A p.Y217X ATTGTTATAAGCA . 145.0 72.0 139.0 0.0 . . . . . none . . PASS Atlas-SNP TRIM9 114088 hgsc.bcm.edu hg19 14 51475908 51475908 + Missense_Mutation SNP T T C novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . TRIM9 NM_052978 exon5 c.A1196G p.Q399R CCCCACTGATCCT . 149.0 49.0 105.0 0.0 . 188 . . . none . . PASS Atlas-SNP EARS2 124454 hgsc.bcm.edu hg19 16 23540828 23540828 + Silent SNP C C T novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . EARS2 NM_001083614 exon7 c.G1347A p.V449V CCCCAGCACACGC . 46.0 13.0 47.0 0.0 . 26 . . . none . . PASS Atlas-SNP RNF166 115992 hgsc.bcm.edu hg19 16 88765421 88765421 + Silent SNP C C A novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . RNF166 NM_178841 exon4 c.G498T p.V166V GTGCTTCACCAGC . 14.0 8.0 14.0 0.0 . 3 . . . none . . PASS Atlas-SNP UNC13D 201294 hgsc.bcm.edu hg19 17 73837041 73837041 + Missense_Mutation SNP A A T novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . UNC13D NM_199242 exon7 c.T611A p.M204K CACCACATGTCCA . 474.0 146.0 451.0 0.0 . 68 . . . none . . PASS Atlas-SNP QRICH2 84074 hgsc.bcm.edu hg19 17 74288035 74288035 + Nonsense_Mutation SNP G G A novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . QRICH2 NM_032134 exon4 c.C2275T p.Q759X CTGCCTGAGGTTG . 219.0 74.0 223.0 0.0 . 143 . . . none . . PASS Atlas-SNP TAF4B 6875 hgsc.bcm.edu hg19 18 23865865 23865865 + Missense_Mutation SNP G G A novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . TAF4B NM_005640 exon7 c.G992A p.R331Q CCTTACGACAACT . 197.0 104.0 234.0 0.0 . 71 . . . none . . PASS Atlas-SNP LPPR3 0 hgsc.bcm.edu hg19 19 814747 814747 + Missense_Mutation SNP T T C novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . . NM_001270366 exon6 c.A602G p.K201R AAGGTCTTCCTGT . 36.0 11.0 34.0 0.0 . . . . . none . . PASS Atlas-SNP ZNF607 84775 hgsc.bcm.edu hg19 19 38190209 38190209 + Missense_Mutation SNP G G T novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . ZNF607 NM_032689 exon5 c.C823A p.H275N CAGTATGAATACT . 119.0 49.0 103.0 0.0 . 82 . . . none . . PASS Atlas-SNP SIPA1L3 23094 hgsc.bcm.edu hg19 19 38621370 38621370 + Missense_Mutation SNP A A C novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . SIPA1L3 NM_015073 exon10 c.A3101C p.K1034T CTGTGAAGGTGGT . 92.0 28.0 87.0 0.0 . 150 . . . none . . PASS Atlas-SNP ZNF780B 163131 hgsc.bcm.edu hg19 19 40540344 40540344 + Missense_Mutation SNP G G A novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . ZNF780B NM_001005851 exon5 c.C2422T p.P808S TCAAAGGGTTTCT . 100.0 38.0 63.0 0.0 . 143 . . . none . . PASS Atlas-SNP CLPTM1 1209 hgsc.bcm.edu hg19 19 45495628 45495628 + Missense_Mutation SNP G G A rs369873479 TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . CLPTM1 NM_001294 exon13 c.G1693A p.V565I ATGCCCGTTATGT . 261.0 100.0 282.0 0.0 . 109 . . . weak . . PASS Atlas-SNP NLRP2 55655 hgsc.bcm.edu hg19 19 55493701 55493701 + Missense_Mutation SNP A A T novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 A A . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . NLRP2 NM_017852 exon6 c.A635T p.Y212F TGCTGTATGGTCC . 135.0 53.0 113.0 0.0 . 161 . . . none . . PASS Atlas-SNP RPL3 6122 hgsc.bcm.edu hg19 22 39714484 39714484 + Missense_Mutation SNP C C A novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 C C . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . RPL3 NM_001033853 exon2 c.G117T p.K39N GACCGGCTTGGAC . 55.0 13.0 68.0 0.0 . 29 . . . none . . PASS Atlas-SNP YY2 404281 hgsc.bcm.edu hg19 X 21875588 21875588 + Missense_Mutation SNP G G A novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 G G . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . YY2 NM_206923 exon1 c.G986A p.R329H ATTTGCGCACACA . 289.0 203.0 253.0 0.0 . 43 . . . none . . PASS Atlas-SNP DAP3 7818 hgsc.bcm.edu hg19 1 155695184 155695185 + Frame_Shift_Ins INS - - A novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . DAP3 NM_033657 exon5 c.282_283insA p.F94fs . . 178.0 63.0 163.0 0.0 . 46 . 0.353933 0 none . . PASS Atlas-INDEL RTL1 388015 hgsc.bcm.edu hg19 14 101348358 101348358 + Frame_Shift_Del DEL T T - novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 T T . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . RTL1 NM_001134888 exon1 c.2769delG p.K923fs . . 53.0 17.0 42.0 0.0 . 120 . 0.320755 0 none . . PASS Atlas-INDEL CCDC13 152206 hgsc.bcm.edu hg19 3 42793437 42793438 + Frame_Shift_Ins INS - - TC novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . CCDC13 NM_144719 exon5 c.594_595insGA p.D198fs . . 83.0 25.0 124.0 0.0 . 71 . 0.301205 0 none . . PASS Atlas-INDEL EFCAB6 64800 hgsc.bcm.edu hg19 22 44107398 44107399 + Frame_Shift_Ins INS - - A novel TCGA-BQ-5882-01A-11D-1589-08 TCGA-BQ-5882-11A-01D-1589-08 - - . . . . Unknown Untested Somatic PhaseI WXS none . . Illumina HiSeq f65963b3-cd4d-4c08-afc0-15bce361cd03 b04cfca5-40a2-4035-b650-45bc55651c71 . EFCAB6 NM_022785 exon10 c.988_989insT p.V330fs . . 88.0 25.0 74.0 0.0 . 177 . 0.284091 0 none . . PASS Atlas-INDEL