Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq	COSMIC_Site_Freq	TVarRat	NVarRat	dbSNP_Strength	dbSNP_AF	dbSNP_PopFreq	Confidence	Algorithm
OR2G2	81470	hgsc.bcm.edu	hg19	1	247751788	247751788	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	OR2G2	NM_001001915	exon1	c.T127C	p.L43L	ACTATTTTGGGGA	.	319.0	87.0	178.0	0.0	.	88	.	.	.	none	.	.	PASS	Atlas-SNP
CCT4	10575	hgsc.bcm.edu	hg19	2	62115531	62115531	+	Missense_Mutation	SNP	T	T	C	rs199542002	bycluster	TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	CCT4	NM_001256721	exon1	c.A112G	p.I38V	CGGAAATGTTGCT	.	50.0	23.0	40.0	0.0	.	38	.	.	.	weak	T|0.998;C|0.002	0.002	PASS	Atlas-SNP
ZSWIM2	151112	hgsc.bcm.edu	hg19	2	187693177	187693177	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	ZSWIM2	NM_182521	exon9	c.A1436T	p.N479I	TTTGAATTTGAAT	.	43.0	7.0	43.0	0.0	.	119	.	.	.	none	.	.	PASS	Atlas-SNP
RCHY1	25898	hgsc.bcm.edu	hg19	4	76439476	76439476	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	RCHY1	NM_001008925	exon1	c.A21G	p.E7E	GCCATCTTCCCGG	.	74.0	12.0	67.0	0.0	.	17	.	.	.	none	.	.	PASS	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	hg19	5	90052799	90052799	+	Missense_Mutation	SNP	G	G	A	rs200576500	bycluster	TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	GPR98	NM_032119	exon57	c.G11761A	p.A3921T	AAGGGCGCTGGGG	.	109.0	26.0	110.0	0.0	.	605	.	.	.	weak	.	.	PASS	Atlas-SNP
KDM3B	51780	hgsc.bcm.edu	hg19	5	137766032	137766032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	KDM3B	NM_016604	exon22	c.A4988G	p.Y1663C	GACTCTATGAGGA	.	191.0	27.0	142.0	0.0	.	177	.	.	.	none	.	.	PASS	Atlas-SNP
C6orf211	79624	hgsc.bcm.edu	hg19	6	151789725	151789725	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	C6orf211	NM_024573	exon5	c.T806G	p.L269W	ACTTCTTGTTGTC	.	141.0	12.0	169.0	0.0	.	30	.	.	.	none	.	.	PASS	Atlas-SNP
COL28A1	340267	hgsc.bcm.edu	hg19	7	7412962	7412962	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	COL28A1	NM_001037763	exon32	c.G2575T	p.D859Y	AGTCATCCTTGCT	.	114.0	23.0	90.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
COL28A1	340267	hgsc.bcm.edu	hg19	7	7412963	7412963	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	COL28A1	NM_001037763	exon32	c.G2574A	p.K858K	GTCATCCTTGCTG	.	116.0	25.0	92.0	0.0	.	113	.	.	.	none	.	.	PASS	Atlas-SNP
SVIL	6840	hgsc.bcm.edu	hg19	10	29788191	29788191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	SVIL	NM_021738	exon18	c.G3518T	p.R1173L	GTGACCCGCTGTT	.	97.0	4.0	91.0	0.0	.	226	.	.	.	none	.	.	PASS	Atlas-SNP
AKAP3	10566	hgsc.bcm.edu	hg19	12	4736579	4736579	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	AKAP3	NM_006422	exon4	c.C1489G	p.P497A	CTTCAGGGTACTC	.	47.0	10.0	48.0	0.0	.	212	.	.	.	none	.	.	PASS	Atlas-SNP
ATXN2	6311	hgsc.bcm.edu	hg19	12	111923516	111923516	+	Splice_Site	SNP	C	C	A	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	ATXN2	NM_002973	exon18	c.2937+1G>T	.	GACTTACTTGCAC	.	88.0	6.0	67.0	0.0	.	99	.	.	.	none	.	.	PASS	Atlas-SNP
PTPN11	5781	hgsc.bcm.edu	hg19	12	112892458	112892458	+	Silent	SNP	T	T	C	rs78376169	bycluster	TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	PTPN11,NS,carcinoma,0,2	PTPN11	NM_080601	exon5	c.T616C	p.L206L	GAAACATTGGGTA	.	68.0	3.0	49.0	0.0	.	623	.	.	.	weak	.	.	PASS	Atlas-SNP
FLII	2314	hgsc.bcm.edu	hg19	17	18149935	18149935	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	FLII	NM_002018	exon23	c.C3024T	p.F1008F	GCTCTCGAACTTC	.	52.0	13.0	19.0	0.0	.	79	.	.	.	none	.	.	PASS	Atlas-SNP
FDXR	2232	hgsc.bcm.edu	hg19	17	72860612	72860612	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	FDXR	NM_001258012	exon8	c.C921G	p.D307E	GATCTTGTCCTGG	.	88.0	7.0	50.0	0.0	.	68	.	.	.	none	.	.	PASS	Atlas-SNP
NLRP7	199713	hgsc.bcm.edu	hg19	19	55452315	55452315	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	NLRP7	NM_001127255	exon3	c.G336A	p.S112S	TAACTCCGAGTCT	.	255.0	60.0	215.0	0.0	.	411	.	.	.	none	.	.	PASS	Atlas-SNP
HELZ2	85441	hgsc.bcm.edu	hg19	20	62198513	62198513	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	.	NM_001037335	exon7	c.G2198A	p.R733Q	CTCTGCCGCGCCA	.	156.0	9.0	91.0	0.0	.	.	.	.	.	none	.	.	PASS	Atlas-SNP
RNMT	8731	hgsc.bcm.edu	hg19	18	13731629	13731630	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5887-01A-11D-1961-08	TCGA-BQ-5887-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	PhaseI	WXS	none	.	.	Illumina HiSeq	1bd98e6b-f43c-424d-9d69-f2653ae70618	84765358-2446-4447-ab14-94b835dc736b	.	RNMT	NM_003799	exon3	c.113_114insT	p.A38fs	.	.	140.0	31.0	222.0	0.0	.	42	.	0.221429	0	none	.	.	PASS	Atlas-INDEL